Part of scaffold_90 (Scaffold)

For more information consult the page for scaffold_90 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LTA ENSTTRG00000014083 (Bottlenosed dolphin)

Gene Details

lymphotoxin alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013350, Bottlenosed dolphin)

Protein Percentage 98.05%
cDNA percentage 98.05%
Ka/Ks Ratio 0.08103 (Ka = 0.0044, Ks = 0.0549)

LTA ENSBTAG00000000016 (Cow)

Gene Details

Lymphotoxin-alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000018, Cow)

Protein Percentage 91.67%
cDNA percentage 91.99%
Ka/Ks Ratio 0.16024 (Ka = 0.0395, Ks = 0.2465)

LTA  (Minke Whale)

Gene Details

lymphotoxin alpha

External Links

Gene match (Identifier: BACU015903, Minke Whale)

Protein Percentage 97.07%
cDNA percentage 97.89%
Ka/Ks Ratio 0.19484 (Ka = 0.009, Ks = 0.0464)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 798 bp    Location:2104846..2103931   Strand:-
>bmy_03157
ATGACACCACCTGGACGTCTCTACCTCCTGAGGGTGTGCAGCACCCCCCTACTCCTCCTCCTTCTGGGACTGCTGCTGGCCCTGCCGCGCGAGGCCCAGGGGCTCTCTGGTGTTGGCCTCCCACTCTCAACTGCACAGCCTGCCCATCAGCACCCCCCGAATCACTTCACCCGAGGCACCTTCAAACCTGCCGCTCACCTTGTTGGTAAACATTCACCTGCCCTCCTAGACATGGACCCAAGCATCCCCTCCAGCTCACCCCCACTCCCACTCCCTTCTGTCCTCCCAACCATCCCCCAGGAACTCAGTCCAGCACCTGCTTCCTCAGGGATTGAGACCTCTGACCCCCAGGTCCTTGACCGCCATCCCCTCTGGCTCTTCCTAGGAGACCCCAGCACCCAGGACTCACTGCRCTGGAGAGCAAACACGGATCGTGCCTTCCTCCGCCACGGCTTCTCTCTGAGCAACAATTCCCTCCTGGTCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTCTTCTCTGGGGAAGGCTGCTTCCCCAAGGCCACCCCCACCCCTCTCTACCTGGCCCACGAGGTCCASCTCTTCTCCTCCCAGTACCCATTCCACGTGCCTCTCCTCAGCGCTCAGAAGTCCGTGTGCCCAGGGCCACAGGGACCTTGGGTGCGCTCGGTGTACCAGGGGGCTGTGTTCCTGCTCACCCGGGGAGACCAGCTGTCCACTCACACAGATGGCATCTCCCACCTGCTCCTCAGCCCCAGTAGTGTCTTCTTTGGAGCCTTCGCTCTATAG

Related Sequences

bmy_03157T0 Protein

Length: 266 aa      View alignments
>bmy_03157T0
MTPPGRLYLLRVCSTPLLLLLLGLLLALPREAQGLSGVGLPLSTAQPAHQHPPNHFTRGTFKPAAHLVGKHSPALLDMDPSIPSSSPPLPLPSVLPTIPQELSPAPASSGIETSDPQVLDRHPLWLFLGDPSTQDSLXWRANTDRAFLRHGFSLSNNSLLVPTSGLYFVYSQVVFSGEGCFPKATPTPLYLAHEVXLFSSQYPFHVPLLSAQKSVCPGPQGPWVRSVYQGAVFLLTRGDQLSTHTDGISHLLLSPSSVFFGAFAL*