Part of scaffold_90 (Scaffold)

For more information consult the page for scaffold_90 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNF ENSTTRG00000014085 (Bottlenosed dolphin)

Gene Details

Tumor necrosis factor Tumor necrosis factor, membrane form Intracellular domain 1 Intracellular domain 2 C-domain 1 C-domain 2 Tumor necrosis factor, soluble form

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013353, Bottlenosed dolphin)

Protein Percentage 97.42%
cDNA percentage 98.14%
Ka/Ks Ratio 0.38762 (Ka = 0.0133, Ks = 0.0342)

TNF ENSBTAG00000025471 (Cow)

Gene Details

Tumor necrosis factor Tumor necrosis factor, membrane form Intracellular domain 1 Intracellular domain 2 C-domain 1 C-domain 2 Tumor necrosis factor, soluble form

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000035682, Cow)

Protein Percentage 86.27%
cDNA percentage 90.27%
Ka/Ks Ratio 0.24717 (Ka = 0.0679, Ks = 0.2747)

TNF  (Minke Whale)

Gene Details

tumor necrosis factor

External Links

Gene match (Identifier: BACU015902, Minke Whale)

Protein Percentage 99.57%
cDNA percentage 99.43%
Ka/Ks Ratio 0.13656 (Ka = 0.0019, Ks = 0.0137)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 702 bp    Location:2101860..2100061   Strand:-
>bmy_03156
ATGAGCACTGAAAGCATGATCCGGGATGTGGAGCTGGCAGAGGAGGCGCTCTCCAAGACGGCAGGGGGYTCCCAGGGTTCCAGAAGGTGCTTGTGTCTCAGCCTCTTCTCCTTCTTCCTGGTCGCAGGAGCCACCACGCTCTTCTGCCTGCTGCACTTCGGGGTAATCGGCCCCCAGAGGGAAGAGTTCCCAACTGGCTACTCCATCATCAGCCCTCTGGCTCAGACACTCAGATCATCTTCTGCAACCTCAAGTAACAAGCCTGTAGCCCATGTTGTAGCCAACCTCAGTGCTCAGGGGCAGCTCCGGTGGCTGAACACATATGCCAACACCCTCCTGGCCAACAGCGTGAAGCTGGAAGACAACCAGCTGGTGGTGCCGACAGACGGGCTGTACCTCATCTACTCCCAGGTCCTCTTCAGGGGCCAAGGCTGCCCTTCCACCCACTTGTTCCTCACCCACACCATCAGCCGCATCGCTGTCTCCTACCAGACCAAGGTCAACCTCCTCTCTGCCATCAAGAGCCCTTGCCAGAGGGAGACGCCAGAGGGGGCTGAGGCCAAGCCCTGGTATGAGCCCATCTACCTGGGAGGGGTCTTCCAGCTGGAGAAGGGTGATCGACTCAGTGCTGAGATCAACCTGCCCGACTATCTGGACTTTGCTGAGTCTGGGCAGGTCTACTTTGGGATCATTGCCCTGTGA

Related Sequences

bmy_03156T0 Protein

Length: 234 aa      View alignments
>bmy_03156T0
MSTESMIRDVELAEEALSKTAGGSQGSRRCLCLSLFSFFLVAGATTLFCLLHFGVIGPQREEFPTGYSIISPLAQTLRSSSATSSNKPVAHVVANLSAQGQLRWLNTYANTLLANSVKLEDNQLVVPTDGLYLIYSQVLFRGQGCPSTHLFLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINLPDYLDFAESGQVYFGIIAL*