Part of scaffold_86 (Scaffold)

For more information consult the page for scaffold_86 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMAD1 ENSTTRG00000008086 (Bottlenosed dolphin)

Gene Details

SMAD family member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007646, Bottlenosed dolphin)

Protein Percentage 86.56%
cDNA percentage 73.82%
Ka/Ks Ratio 0.01491 (Ka = 0.0799, Ks = 5.3564)

SMAD1 ENSBTAG00000002835 (Cow)

Gene Details

Mothers against decapentaplegic homolog 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003668, Cow)

Protein Percentage 86.56%
cDNA percentage 74.69%
Ka/Ks Ratio 0.01389 (Ka = 0.0787, Ks = 5.6657)

SMAD1  (Minke Whale)

Gene Details

SMAD family member 1

External Links

Gene match (Identifier: BACU013553, Minke Whale)

Protein Percentage 86.56%
cDNA percentage 73.9%
Ka/Ks Ratio 0.01549 (Ka = 0.0799, Ks = 5.158)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1293 bp    Location:190188..219311   Strand:+
>bmy_03063
ATGCACTCCAGCACCCCCATCAGCTCCCTCTTCTCCTTCACCAGCCCAGCAGTGAAGAGACTGCTCGGCTGGAAGCAAGGAGATGAAGAGGAAAAGTGGGCGGAGAAGGCGGTGGACTCATTAGTGAAGAAGTTAAAGAAGAAGAAAGGAGCCATGGATGAGCTGGAGAGGGCGCTCAGCTGCCCAGGGCAACCCAGCAAGTGTGTGACGATTCCGCGCTCCCTGGATGGGCGGCTGCAGGTGTCCCACCGCAAGGGTTTGCCCCACGTCATTTACTGCCGAGTGTGGCGTTGGCCCGATCTCCAGTCTCACCATGAGTTGAAGCCACTGGAGTGCTGTGAGTTCCCATTTGGCTCCAAGCAGAAAGAGGTGTGCATTAACCCCTACCACTACCGCCGTGTGGAGACGCCAGTTCTGCCTCCCGTGCTCGTGCCCAGACACAGCGAGTACAACCCGCAGCTGAGCCTCCTGGCCAAGTTCCGCAGCGCGTCCCTGCACAGCGAGCCGCTCATGCCGCACAACGCCACCTACCCCGACTCCTTCCAGCAGCCTCCGTGCCCGGCCTTCCCTCCGTCGCCCGGGCCCCCGTTCCCGCAGTCCCCGTGCACGGCCGGCTACCCTCACTCCCCGGGAAGCCCTTCCGAGCCGGAGAGCCCCTTCCAGCACTCAGATTTTCGGCCGGTTTGCTACGAGGAGCCACAGCACTGGTGCTCAGTCGCCTACTATGAACTGAACAACCGTGTTGGGGAGACGTTCCAGGCTTCCTCCCGAAGTGTGCTTATTGATGGATTCACAGACCCTTCGAATAACAGGAACAGATTCTGTCTCGGACTTCTTTCTAATGTAAACAGAAACTCAACAATAGAAAATACCAGAAGACACATAGGAAAGGGCGTGCACCTGTACTATGTCGGGGGAGAGGTCTACGCCGAGTGCGTGAGTGACAGCAGCATTTTTGTGCAGAGCCGGAACTGCAACTATCAGCACGGCTTTCACCCGGCCACCGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGGTCTTCAACAACCAGCTGTTCGCTCAGCTGCTCGCCCAGTCCGTCCACCACGGATTTGAAGTCGTTTATGAGTTGACTAAGATGTGCACCATCCGGATGAGTTTTGTCAAGGGCTGGGGAGCCGAGTATCATCGCCAGGATGTCACGAGCACGCCCTGCTGGATTGAGATTCACCTTCATGGACCACTGCAGTGGTTGGACAAAGTTCTGACTCAAATGGGCTCTCCACACAACCCGATTTCTTCAGTGTCTTAA

Related Sequences

bmy_03063T0 Protein

Length: 431 aa      View alignments
>bmy_03063T0
MHSSTPISSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMDELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYRRVETPVLPPVLVPRHSEYNPQLSLLAKFRSASLHSEPLMPHNATYPDSFQQPPCPAFPPSPGPPFPQSPCTAGYPHSPGSPSEPESPFQHSDFRPVCYEEPQHWCSVAYYELNNRVGETFQASSRSVLIDGFTDPSNNRNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECVSDSSIFVQSRNCNYQHGFHPATVCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS*