Sequence detailsbmy_01518 (Coding sequence)

Part of scaffold_36 (SequenceType object (1))

For more information consult the page for scaffold_36 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HMG20AENSTTRG00000006500 (Bottlenosed dolphin)

Gene Details

high mobility group 20A

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006142, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.13%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0292)

HMG20AENSBTAG00000020441 (Cow)

Gene Details

high mobility group protein 20A

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000027243, Cow)

Protein Percentage 98.56%
cDNA percentage 96.83%
Ka/Ks Ratio 0.05593 (Ka = 0.0065, Ks = 0.1159)

HMG20A (Minke Whale)

Gene Details

high mobility group 20A

External Links

Gene match (Identifier: BACU017879, Minke Whale)

Protein Percentage 99.71%
cDNA percentage 99.14%
Ka/Ks Ratio 0.04578 (Ka = 0.0013, Ks = 0.0289)

Additional orthologs identified in other species via the OPTIC pipeline.

HMG20A (Human)   Hmg20a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1116 bp    Location:1187302..1162582   Strand:-
Raw sequence 
>bmy_01518
ATGGAAACCTTGATGACTGGTTCCACCCTGCCTCCCCTTTTTGCAGATGAAGATGGCTCCAAGGAGAGTAATGACCTGGCTACAACTGGGATAACCCACCCAGAGGTTCCATATAGTAGTGGAGCCTCATCATCCACAAATAATCCAGAATTTGTTGAGGATCTCTCCCAAGGTCAGTTGCTTCAGAATGAGTCTTCAAATACAGCAGAAGGCAATGAACAGAGGCACGAAGATGAGCAAAGAAGTAAACGAGGAGGTTGGTCCAAAGGAAGAAAGAGGAAGAAACCTCTTCGAGACAGCAATGCACCCAAATCCCCCCTTACAGGATATGTTCGGTTCATGAACGAGCGTCGAGAACAGCTTCGAGCAAAAAGACCAGAAGTCCCATTTCCAGAAATTACAAGGATGTTAGGCAATGAATGGAGTAAACTTCCTCCGGAGGAAAAACAGCGCTACCTTGATGAAGCAGACAGAGATAAGGAGCGTTACATGAAGGAACTGGAGCAGTATCAGAAGACTGAGGCCTACAAGGTTTTCAGTAGGAAAACCCAGGACCGTCAGAAAGGCAAATCTCATAGGCAAGATGCAGCCCGACAGGCCACTCATGATCATGAGAGTATTTCCTATCCTGTAATTAGGATTGGCTTCTGTTTAAGAATTAACTATTTTGTTACTCTTGATTCACAGAAAGAAGCAGAGGTAAAGGAACGGTCTGTTTTTGACATCCCTATATTTACAGAGGAATTCCTGAACCACAGCAAAGCTCGGGAGGCAGAGCTCCGTCAGCTTCGAAAATCCAACATGGAGTTTGAGGAGAGGAACGCAGCCCTGCAAAAGCACGTGGAGAGCATGCGCACAGCGGTGGAGAAGCTGGAGGTGGACGTGATCCAGGAGCGGAGCCGCAACACCGTCTTACAGCAGCACCTGGAGACCCTGCGGCAGGTGTTGACAAGCAGCTTCGCCAGCATGCCCTTGCCTGGAAGTGGAGAGACACCTACAGTGGACACTATCGACTCCTATATGAACAGACTGCACAGTATTATTTTAGCTAACCCCCAAGACAATGAAAACTTCATAGCTACAGTTCGAGAAGTTGTGAACAGGCTTGATCGTTAG

Related Sequences

bmy_01518T0 SequenceType object (3)

Length: 372 aa      View alignments
>bmy_01518T0
METLMTGSTLPPLFADEDGSKESNDLATTGITHPEVPYSSGASSSTNNPEFVEDLSQGQLLQNESSNTAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHESISYPVIRIGFCLRINYFVTLDSQKEAEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR*