Sequence detailsbmy_00568 (Coding sequence)

Part of scaffold_9 (SequenceType object (1))

For more information consult the page for scaffold_9 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MAP1LC3AENSTTRG00000012466 (Bottlenosed dolphin)

Gene Details

microtubule-associated protein 1 light chain 3 alpha

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011827, Bottlenosed dolphin)

Protein Percentage 44.86%
cDNA percentage 44.55%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2079)

MAP1LC3AENSBTAG00000006135 (Cow)

Gene Details

Microtubule-associated proteins 1A/1B light chain 3A

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008072, Cow)

Protein Percentage 99.07%
cDNA percentage 96.57%
Ka/Ks Ratio 0.00931 (Ka = 0.0035, Ks = 0.3769)

Additional orthologs identified in other species via the OPTIC pipeline.

MAP1LC3A (Human)   Map1lc3a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 321 bp    Location:2733018..2733722   Strand:+
Raw sequence 
>bmy_00568
GACCGCTGTAAAGAGGTGCAGCAGATCCGCGAGCAGCACCCCAGCAAAATCCCGGTAATCATCGAGCGCTACAAGGGTGAGAAGCAGCTGCCCGTCCTGGACAAGACCAAGTTCCTGGTCCCGGACCATGTCAACATGAGCGAGTTGGTCAAGATCATCCGGCGCCGCCTGCAGCTGAACCCCACGCAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCCACACCCATCGCCGACATCTATGAGCAGGAGAAGGACGATGACGGCTTCCTCTACATGGTCTACGCCTCCCAGGAAACCTTCGGCTTC

Related Sequences

bmy_00568T0 SequenceType object (3)

Length: 107 aa      View alignments
>bmy_00568T0
DRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFGF