Sequence details bmy_00242 (Coding sequence)

Part of scaffold_2 (Scaffold)

For more information consult the page for scaffold_2 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RTFDC1 ENSTTRG00000014873 (Bottlenosed dolphin)

Gene Details

replication termination factor 2 domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014102, Bottlenosed dolphin)

Protein Percentage 96.3%
cDNA percentage 97.33%
Ka/Ks Ratio 0.57234 (Ka = 0.0234, Ks = 0.0408)

C13H20ORF43 ENSBTAG00000027390 (Cow)

Gene Details

UPF0549 protein C20orf43 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000039110, Cow)

Protein Percentage 96.3%
cDNA percentage 93.0%
Ka/Ks Ratio 0.09732 (Ka = 0.0232, Ks = 0.2386)

Additional orthologs identified in other species via the OPTIC pipeline.

RTFDC1 (Human)   Rtfdc1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 489 bp    Location:1693420..1678456   Strand:-
Raw sequence 
>bmy_00242
ATGGGTTGCGACGGGGGAACAATTCCCAAGAGGCATGAACTGGTGAAGGGGCCGAAGAAGGTTGAGAAGGTTGACAAGGATGCTGAGTTAGTGGCCCAGTGGAACTATTGTACTCTAAGTCAAGAAATATTAAGACGACCAATAGTTGCCTGTGAACTTGGCAGACTTTACAACAAAGATGCCATCATTGAGTTTTTATTGGACAAGTCTTCCGAAAAGGCTCTTGGGAAGGCAGCCTCTCACATTAAAAGCATTAAGAATGTGACAGAACTGAGGCTTTCTGATAACCCCGCCTGGGAAGGAGATAAAGGAAACACTAAAGGTGACAAACACGATGACCTCCAGCGGGCACGTTTCATCTGCCCCGTTGTGGGCTTGGAGATGAATGGCCGACACAGGTTTTGTTTCCTGCGGGGCTGTGGTTGCGTGTTTTCTGAACGAGCCCTGAAAGAGATAAAAACAGAAGTTTGTCACACGGTGAGTTGTTGA

Related Sequences

bmy_00242T0 Protein

Length: 163 aa      View alignments
>bmy_00242T0
MGCDGGTIPKRHELVKGPKKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAIIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRGCGCVFSERALKEIKTEVCHTVSC*