Sequence details bmy_00234 (Coding sequence)

Part of scaffold_2 (Scaffold)

For more information consult the page for scaffold_2 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CTCFL ENSTTRG00000015672 (Bottlenosed dolphin)

Gene Details

CCCTC-binding factor (zinc finger protein)-like

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014847, Bottlenosed dolphin)

Protein Percentage 89.1%
cDNA percentage 94.64%
Ka/Ks Ratio 1.17029 (Ka = 0.0574, Ks = 0.0491)

BORIS ENSBTAG00000013079 (Cow)

Gene Details

transcriptional repressor CTCFL

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017390, Cow)

Protein Percentage 75.0%
cDNA percentage 83.33%
Ka/Ks Ratio 0.41051 (Ka = 0.1464, Ks = 0.3567)

CTCFL  (Minke Whale)

Gene Details

CCCTC-binding factor (zinc finger protein)-like

External Links

Gene match (Identifier: BACU011292, Minke Whale)

Protein Percentage 96.03%
cDNA percentage 97.87%
Ka/Ks Ratio 0.7403 (Ka = 0.0184, Ks = 0.0249)

Additional orthologs identified in other species via the OPTIC pipeline.

CTCFL (Human)   Ctcfl (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1776 bp    Location:854262..883675   Strand:+
Raw sequence 
>bmy_00234
ATGGCAGGGACCGAGATCTCTGTCCCTCCGGAGCAGTTCACCAAAATCAAAGAAGGAGTGTTGATAACAGAAAAAGCCCTGGAGGAGGGAGAAGACGGGGTGTGCAGAGTGAGGGAACACCCAAGCTCCGAAGAGTTAGAGGCCGAGAGCACCCACGGGGCCCTGCAGGCCAAGATCCCGGGGGGCGAGCTGGAGCTGGTGCTGGCCATCCCGGAGGAGGGCGAGAAGCACGTCCTGACCCTGCAGACGGCACACTTGACCTCCGAAGAGGCGGAGCTGCAGGACCTGGCACCACAGCACCAGGGAGAGGTGCCGGTGGTGGTGCAGCAGGCTGGTAGTGGGCTGCAGTCACTGGTGTGGCTTGGGGAGGGGTCCCAGCAGAGCCTGCACCAGTGTGTCACCATTAGCATCCAGGAGGAGGTGTACACGCTGCAGGAGGTGGAGGTGATGCAGTTTCATGTTCTGGAGGAGAATGTGACCGGGGCCAGTGACGACAGTAAGTGTGCAGTGAGCCTGGCAGAAAGCTCTGGATCTGTAAAGCTTGAGAAAGGTCAGGAAGAGGAACAGCTGCTGGCTGAAGGTGGATTCAGCGAAGAAACAGAAGGGCAGTTTTTTCTTGTGGAAGCGAGACCAGGAGATGAAATTGTTCTGACAATTTCAACCTTAAATATTGAGAAACCTGCGCTGGGTGAAGCACACGTTGAAAAAGCCAACGCTACAAAAAGTCGAAAGAAGACAAAGGAAGTAAAACGAACCTTCCACTGTGACATCTGCATGTTCACCTCTTCTAGAATTTCGAGTTTGAATCGTCATATGAAAACTCACACCAATGAAAAGCCCCATATGTGTCACCTTTGCCTGAAAGCTTTCCGTACTGTTACTCTCCTTCGGAATCATATCAACACCCATACAGGAACCAGGCCCTACAAGTGTGGTGATTGTGACATGGCATTTGTCACCAGTGGAGAACTTGTCCGACACAGACGTTATAAACACACTCACGAGAAGCCCTTTAAATGTTCCATGTGCAAGTATGCTAGCGTAGAGGCAAGTAAATTGAAGCGCCACATCCGTTCACACACGGGCGAACGCCCCTTTCAGTGCTGTCTCTGTAGCTACGCCGGCAAAGACACCTACAAGCTGAAACGGCACATGAGGACGCATTCCGGTGTCCATTTGCGCAACCTGCATACGTACAAAGCTGCAGAGATGAAGTGCCACTACTGTCCTGCTGTCTTCCACGAGCGCCATGCTCTCCTTCAGCACCACAAAACTCACAAAAACGAGAAGAGGTTCAAGTTTCACATACGTACCCACACTGGAGAGAAGCCGTTTGCCTGCCCCTCCTGCAATAGATGTTTCCGACAGAAACAACTTCTAAACGTGCACTTCAAGAAATACCACGATACAACTTTCGTCCCGACTGTTTACAAATGCCCCAGGTGTGGCAAAGGCTTTTCCCGCTTGAATAACATGCAGAGACACTTGAAAAAGTGTGGCTCCGGGCAAGAAAAGCCAACCACCTCGGAAAAAGGAAGACGAACAAAAAAGAGGAARCCGACCATCCCRAAAGAGACRGCCAAGGAAGACGAAGCCGCTGCCGAGGAGGCCTCCCTGGTGAGCGGAGAGCAGTACCCGGGAGGGCTGGTTCCCATCGACTTTGGAGAAGCCACGGCTGGAGGCGAGGACCTGGATGAAGACATGACCTGTGAGATGATCCTGGCCATGATGGAGAAGTATGAAGTCCCCCCATTACATTCCGTTATAGCTTATTAG

Related Sequences

bmy_00234T0 Protein

Length: 592 aa      View alignments
>bmy_00234T0
MAGTEISVPPEQFTKIKEGVLITEKALEEGEDGVCRVREHPSSEELEAESTHGALQAKIPGGELELVLAIPEEGEKHVLTLQTAHLTSEEAELQDLAPQHQGEVPVVVQQAGSGLQSLVWLGEGSQQSLHQCVTISIQEEVYTLQEVEVMQFHVLEENVTGASDDSKCAVSLAESSGSVKLEKGQEEEQLLAEGGFSEETEGQFFLVEARPGDEIVLTISTLNIEKPALGEAHVEKANATKSRKKTKEVKRTFHCDICMFTSSRISSLNRHMKTHTNEKPHMCHLCLKAFRTVTLLRNHINTHTGTRPYKCGDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCKYASVEASKLKRHIRSHTGERPFQCCLCSYAGKDTYKLKRHMRTHSGVHLRNLHTYKAAEMKCHYCPAVFHERHALLQHHKTHKNEKRFKFHIRTHTGEKPFACPSCNRCFRQKQLLNVHFKKYHDTTFVPTVYKCPRCGKGFSRLNNMQRHLKKCGSGQEKPTTSEKGRRTKKRKPTIPKETAKEDEAAAEEASLVSGEQYPGGLVPIDFGEATAGGEDLDEDMTCEMILAMMEKYEVPPLHSVIAY*