KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:42 2014 Check: 00 .. Name: BACU003938/1-525 Len: 585 Check: 9707 Weight: 1.00 Name: ENSBTAP00000056543/1-507 Len: 585 Check: 1864 Weight: 1.00 Name: ENSP00000271555/1-521 Len: 585 Check: 3102 Weight: 1.00 Name: bmy_03416T0/1-576 Len: 585 Check: 4970 Weight: 1.00 Name: ENSTTRP00000001043/1-494 Len: 585 Check: 9482 Weight: 1.00 // 1 50 BACU003938/1-525 MGRKKIQIQR ITDERNRQVT FTKRKFGLMK KAYELSVLCD CEIALIIFNH ENSBTAP00000056543/1-507 MGRKKIQIQR ITDERNRQVT FTKRKFGLMK KAYELSVLCD CEIALIIFNH ENSP00000271555/1-521 MGRKKIQIQR ITDERNRQVT FTKRKFGLMK KAYELSVLCD CEIALIIFNH bmy_03416T0/1-576 MGRKKIQIQR ITDERNRQVT FTKRKFGLMK KAYELSVLCD CEIALIIFNH ENSTTRP00000001043/1-494 ---------- --------VT FTKRKFGLMK KAYELSVLCD CEIALIIFNH 51 100 BACU003938/1-525 SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCDSPE ENSBTAP00000056543/1-507 SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCDSPE ENSP00000271555/1-521 SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCDSPE bmy_03416T0/1-576 SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCDSPE ENSTTRP00000001043/1-494 SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCDSPE 101 150 BACU003938/1-525 PDGEDSLEQS PLLEDKYRRA SEELDGLFRR YG-------- ---------- ENSBTAP00000056543/1-507 PDGEDSLEQS PLLEDKYRRA SEELDGLFRR YG-------- ---------- ENSP00000271555/1-521 PDGEDSLEQS PLLEDKYRRA SEELDGLFRR YG-------- ---------- bmy_03416T0/1-576 PDGEDSLEQS PLLEDKYRRA SEELDGLFRR YGVSPTHSLS VGPPFRPLPP ENSTTRP00000001043/1-494 PDGEDSLEQS PLLEDKYRRA SEELDGLFRR YG-------- ---------- 151 200 BACU003938/1-525 -ALHKKHREC ESPEVDEVFA LTPQTEEKYK KIDEEFDKMM QSYRLASAVP ENSBTAP00000056543/1-507 ---------- ---------- ---------- ---------- ------SAVP ENSP00000271555/1-521 ---------- ---------- ---------- ---------- ------STVP bmy_03416T0/1-576 QALHKKHREC ESPEVDEVFA LTPQTEEKYK KIDEEFDKMM QSYRLASAVP ENSTTRP00000001043/1-494 ---------- ---------- ---------- ---------- ------SAVP 201 250 BACU003938/1-525 APNFAMPVTV PVSNQSSLQF SNPSGSLVTP SLVTSSLTDP RLLSPQQPAL ENSBTAP00000056543/1-507 APNFAMPVTV PVSSQSSLQF SNPSGSLATP SLVTSSLTDP RLLSPQQPAL ENSP00000271555/1-521 APNFAMPVTV PVSNQSSLQF SNPSGSLVTP SLVTSSLTDP RLLSPQQPAL bmy_03416T0/1-576 APNFAMPVTV PVSNQSSLQF SNPSGSLVTP SLVTSSLTDP RLLSPQQPAL ENSTTRP00000001043/1-494 APNFAMPVTV PVSNQSSLQF SNPSGSLVTP SLVTSSLTDP RLLSPQQPAL 251 300 BACU003938/1-525 QRNSVSPGLP QRPASAGAML GGDLNSANGA CPSPVGNGYV SARASPGLLP ENSBTAP00000056543/1-507 QRSSVSPGLP QRPASAGAML GGDLSSANGA CPSPVGNGYV SARASPGLLP ENSP00000271555/1-521 QRNSVSPGLP QRPASAGAML GGDLNSANGA CPSPVGNGYV SARASPGLLP bmy_03416T0/1-576 QRNSVSPGLP QRPASAGAML GGDLNSANGA CPSPVGNGYV SARASPGLLP ENSTTRP00000001043/1-494 QRNSVSPGLP QRPASAGAML GGDLNSANGA CPSPVGNGYV SARASPGLLP 301 350 BACU003938/1-525 VANGNSLNKV IPAKSPPPPT HSAQLGAPSR KPDLRVITSQ GGKGLMHHLT ENSBTAP00000056543/1-507 VANGNSLNKV IPAKSPPPPA HSAQLGAPSR KPDLRVITSQ GGKGLMHH-- ENSP00000271555/1-521 VANGNSLNKV IPAKSPPPPT HSTQLGAPSR KPDLRVITSQ AGKGLMHHLT bmy_03416T0/1-576 VANGNSLNKV IPAKSPPPPT HSAQLGAPSR KPDLRVITSQ GGKGLMHHLT ENSTTRP00000001043/1-494 MANGNSLNKV IPAKSPPPPT HSAQLGAPSR KPDLRVITSQ GGKGLMHHLT 351 400 BACU003938/1-525 EDHLDLNNAQ RLGVSQSTHS LTTPVVSVAT PSLLSQGLPF SSMPTAYNTA ENSBTAP00000056543/1-507 -----LNNAQ RLGVSQSTHS LTTPVVSVAT PSLLSQGLPF SSMPTAYNTD ENSP00000271555/1-521 EDHLDLNNAQ RLGVSQSTHS LTTPVVSVAT PSLLSQGLPF SSMPTAYNTD bmy_03416T0/1-576 EDHLDLNNAQ RLGVSQSTHS LTTPVVSVAT PSLLSQGLPF SSMPTAYNTD ENSTTRP00000001043/1-494 EDHLDLNNAQ RLGVSQSTHS LTTPVVSVAT PSLLSQGLPF SSMPTAYNTD 401 450 BACU003938/1-525 F-LTCEWLAS --------GL FCGEIRLDQK TPKLLPTPQA HIP------- ENSBTAP00000056543/1-507 YQLTSAELSS LPAFSSPGGL SLSNVTAWQQ PQQPPQPQPP QQPQPQPPQP ENSP00000271555/1-521 YQLTSAELSS LPAFSSPGGL SLGNVTAWQQ PQQPQQPQQP QPPQQQPPQP bmy_03416T0/1-576 YQLTSAELSS LPAFSSPGGL SLGSVTAWQQ PPQPQQPPQP PQPQPQ-PQP ENSTTRP00000001043/1-494 YQLTSAELSS LPAFSSPGGL SLGSVTAWQQ PPQPQQPPQP Q-PQPQ-PQP 451 500 BACU003938/1-525 ---------- ---------- ----DLNHAS PGSPLPHVGA ALTVTTHPHI ENSBTAP00000056543/1-507 -------PQQ PQQPPQQQPH LVPVSLSNLI PGSPLPHVGA ALTITTHPHI ENSP00000271555/1-521 QQPQPQQPQQ PQQPPQQQSH LVPVSLSNLI PGSPLPHVGA ALTVTTHPHI bmy_03416T0/1-576 -------PQQ PQPPPQQQPH LVPVSLSNLI PGSPLPHVGA ALTVTTHPHI ENSTTRP00000001043/1-494 -------PQQ PQPPPQQQPH LVPVSLSNLI PGSPLPHVGA ALTVTTHPHI 501 550 BACU003938/1-525 SIKSEPVSPS RERSPAPPPP AVFPATRPEP GDSLSSPAGA SYETGDRDDG ENSBTAP00000056543/1-507 SIKSEPVSPS RERSPAPPPP AVFPATRPEP GDALSSPAGG SYETGDRDDG ENSP00000271555/1-521 SIKSEPVSPS RERSPAPPPP AVFPAARPEP GDGLSSPAGG SYETGDRDDG bmy_03416T0/1-576 SIKSEPVSPS RERSPAPPPP AVFPATRPEP GDSLSSPAGA SYETGDRDDG ENSTTRP00000001043/1-494 SIKSEPVSPS RERSPAPPPP AVFPATRPEP GDSLSSPAGA SYETGDRDDG 551 600 BACU003938/1-525 RGDFGPTLGL LRPAPEPEAE GSAVKRMRLD TWVL- ENSBTAP00000056543/1-507 RGDFGPTLGL LRPAPEPEAE GSAVKRMRLD TWTLK ENSP00000271555/1-521 RGDFGPTLGL LRPAPEPEAE GSAVKRMRLD TWTLK bmy_03416T0/1-576 RGDFGPTLGL LRPAPEPEAE GSAVKRMRLD TWVL- ENSTTRP00000001043/1-494 RGDFGPTLGL LRPAPEPEAE GSAVKRMRLD TWTLK