KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:26:37 2014  Check: 00 ..

 Name: BACU014488/1-197          Len:    274  Check:  1255  Weight:  1.00
 Name: ENSP00000375248/1-235     Len:    274  Check:  33  Weight:  1.00
 Name: bmy_00151T0/1-230         Len:    274  Check:  6311  Weight:  1.00
 Name: ENSBTAP00000055442/1-224  Len:    274  Check:  8831  Weight:  1.00

//


                          1                                                   50
BACU014488/1-197          ---------- ---------- ---------- ---------- ---------- 
ENSP00000375248/1-235     MLRGAPGLGL TARKGAEDSA EDLGGPCPEP GGDSGVLGAN GASCSRGEAE 
bmy_00151T0/1-230         MHRGAPGPGL RGLKGDEGSA QDLGSSCLEA GRDFGVLREN GSPRGLGEAE 
ENSBTAP00000055442/1-224  MHRGAPGPGL RGLKGAEGSP QDLGNSCLEA ERDFGVLREN GGPRGLGEAE 


                          51                                                 100
BACU014488/1-197          ---------- --------MA ANVRERKRIL DYNEAFNALR RALRHDLGGK 
ENSP00000375248/1-235     EPAG-RRRAR PVRSKARRMA ANVRERKRIL DYNEAFNALR RALRHDLGGK 
bmy_00151T0/1-230         EVVGSRKRSR PVRSKARRMA ANVRERKRIL DYNEAFNALR RALRHDLGGK 
ENSBTAP00000055442/1-224  EVAGSRKRSR PVRSKARRMA ANVRERRRIL DYNEAFNALR RALRHDLGGK 


                          101                                                150
BACU014488/1-197          RLSKIATLRR AIHRITALSL VLRASPAPRW PCGHLECYGQ AA------GA 
ENSP00000375248/1-235     RLSKIATLRR AIHRIAALSL VLRASPAPRG PCGHLECHGP AA-------R 
bmy_00151T0/1-230         RLSKIATLRR AIHRITALSL VLRASPAPRW PCGHLECYGQ AAGAGDAGDA 
ENSBTAP00000055442/1-224  RLSKIATLRR AIHRIAALSL VLRASPAPRW PCGHQECHRQ AA------RA 


                          151                                                200
BACU014488/1-197          GDAGDAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
ENSP00000375248/1-235     GDTGDTGASP PPPAGPSLAR PDAARPSVPS APRCAS---- ---------- 
bmy_00151T0/1-230         GDAGDAGSSP PQPAPP---- -----PAGPF AQRCAS---- ---------- 
ENSBTAP00000055442/1-224  GDAGDLGSSP PAP-PP---- -----PAGPF APRCAS---- ---------- 


                          201                                                250
BACU014488/1-197          XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSASGWYAQ SGKSP--AAI 
ENSP00000375248/1-235     ---------C PPHAPLARPS AVAEG-PGLA QASGGSWRRC PGASSAGPPP 
bmy_00151T0/1-230         ---------C FLHTPLGQAR AAAEA-RGVA QASAGSWRRS LGA----PSA 
ENSBTAP00000055442/1-224  ---------C HPHTPLGRPR AVAEALPGWA QASPGSWRRS LGA----PSA 


                          251                                                300
BACU014488/1-197          WADEAEGGHR GGAKALTAAA PPS- 
ENSP00000375248/1-235     WP-------R GYLRSAPGMG HPRS 
bmy_00151T0/1-230         WP-------R GHLRASPGLG YQHS 
ENSBTAP00000055442/1-224  WP-------R GLLRAGPGLG HQHS