KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:47 2014 Check: 00 .. Name: BACU017988/1-578 Len: 1230 Check: 6757 Weight: 1.00 Name: ENSP00000341368/1-1188 Len: 1230 Check: 1985 Weight: 1.00 Name: ENSBTAP00000055125/1-907 Len: 1230 Check: 2849 Weight: 1.00 Name: bmy_00085T0/1-750 Len: 1230 Check: 5855 Weight: 1.00 Name: ENSTTRP00000013313/1-190 Len: 1230 Check: 6871 Weight: 1.00 // 1 50 BACU017988/1-578 MKKNQTVQGT FSKLFGKKHA NPPATSLYAT NPPWIFTQEA PEEGTRHFDG ENSP00000341368/1-1188 MKKKQTVQGT FSKLFGKKHT TTPSTSLYAT NPPWIFTQEA PEEGTGGFDG ENSBTAP00000055125/1-907 ---------- ---------- ---------- ---------- ---------- bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 51 100 BACU017988/1-578 IYYGDNRFDT VSESGTATLK ARPRVRPLLT FLPLDAQENH GLAVPTPSVP ENSP00000341368/1-1188 IYYGDNRFNT VSESGTATLK ARPRVRPLLT FLPLNAQENH GLAVPTPSVP ENSBTAP00000055125/1-907 ---------- ---------- -------PFP NPHPDNTQKL RSPSPCPLPS bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 101 150 BACU017988/1-578 DSFADKQMTG TSKLINGNLR LYSSVGDLRP RHY------- ----GQDLLI ENSP00000341368/1-1188 DDFADKEVTG TSSLVNGNLR LYSSVGDLRP GQY------- ----GQDLLI ENSBTAP00000055125/1-907 SGILVKEKEE RKQKRGGEHQ EGPHSTSLPP SFHIRSACQA YPDRAAELAL bmy_00085T0/1-750 -------MTG TSKLINGNLR LYSSVGDLRP GHY------- ----GQDLLI ENSTTRP00000013313/1-190 ---------- ---------- ---------- --Y------- ---------- 151 200 BACU017988/1-578 PPPPPGPAPA PPSDTPQPQE EPSPPPPPST APPPPPLLLL EPPSPPSVAP ENSP00000341368/1-1188 PPPPPGPAPG PPQDISEPPG GSPLPSPPST APPPPP-LLL EPPPPPSMAP ENSBTAP00000055125/1-907 PKEPGAVAPA GPRRGQQVQS SEQAETPPPA PPLPPP---- APPLPPP-AP bmy_00085T0/1-750 PPPPPGPAPA PPSDTPQPQE EPSPPPPPST APPPPP-LLL EPPSPPSVAP ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 201 250 BACU017988/1-578 PLPPVMGALS AAPPLPSP-- STPTPPDFIP P-------RE GGAPKPAREG ENSP00000341368/1-1188 PPPPVLEALS PPHTLSSP-- SIPTPPDFIP PAPPLAFLAP PPPPVPAPAP ENSBTAP00000055125/1-907 PLPP------ AAPPLPPAEK AAPAPAGLMK R-------PK SGSPAPKPKP bmy_00085T0/1-750 PLPPVMGALS AAPPLPSP-- STPTPPDFIP P-------AP PPPLLPALAP ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 251 300 BACU017988/1-578 GAP-KPAREG GAPKPARE-- ---------G GAPKPAREGG APKPAREGGA ENSP00000341368/1-1188 PAPASPHTVG TRLFPPGGVT KWKSDVALNG RQAEATRASP PRSPAEPKGS ENSBTAP00000055125/1-907 EPPSPEETVS SEPMDWRDPS QMAKLRDQLS AYLCGSRRED RLASHRPGPT bmy_00085T0/1-750 PAPVSPHTPG THPFPAAGVT KWKSEVAVSD GQPEAPRGSP PRSPAEPKGS ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 301 350 BACU017988/1-578 ---------- ---------- PKPAREGGAP KPAREGGAPK ---------- ENSP00000341368/1-1188 ALGPNPEPHL TFPRSFKVPP PTPVRTSSIP VQEAQEAPRK EEGATKKAPS ENSBTAP00000055125/1-907 AASQEREDHK RPSLPAKEAP PSLLQKEAPP SPPEKEAPSS VPEES--PCS bmy_00085T0/1-750 LLG--PETHL TFPSSLKVPP PTPVRTSSIS SQEAQGALPE EGEATKKAPS ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 351 400 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 RLPLPPSFHI RPASQVYPDR APEPDCPGEL KATAPASPRL GQSQSQADER ENSBTAP00000055125/1-907 RPKKAATSLI LPPVDYLPQD APTPSVWEIR KKLEAQL--- ---------- bmy_00085T0/1-750 RLPLPPSFHI RPASQVYPDR ATEPDHPEEP KAMAPAT--- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 401 450 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 AGTPPPAPPL PPPAPPLPPP APPLPPAAPP LPCAQKAAHP PAGFTKTPKS ENSBTAP00000055125/1-907 ---------- ---------- ---------- ---------- ---------- bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 451 500 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 SSPALKPKPN PPSPENTASS APVDWRDPSQ MEKLRNELAA YLCGSRREDR ENSBTAP00000055125/1-907 ---------- ---------- ---------- ---------- ---------- bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 501 550 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 FLSHRPGPTV APQSKEGKKG PRLPEKETLL SLPAKDTPPG VPEKSLGGSS ENSBTAP00000055125/1-907 ---------- ---------- ---------- ---------- ---------- bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 551 600 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 LTETEAAPSL TLPSVDYIPQ DSPTPSVRQI RNELEARLSS AAEKEAKPSI ENSBTAP00000055125/1-907 ---------- ---------- ---------- --------SS LAEKEARPSR bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 601 650 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 GSLPPKPRLE GGRICENGAD DDKLSKPVAK NLPPQSTTLL PTTSLQPKAM ENSBTAP00000055125/1-907 GSLPPKPQPE GGRIFENRDD NSKFPKPVAK NLPPLSTTPL PNTPLQSKAT bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 651 700 BACU017988/1-578 ---------- ---------- ---------- ---------- ---------- ENSP00000341368/1-1188 LGPAIPPKAT PEPAIPPKAT LWPATPPKAT LGPATPLKAT SGPTTPLKAT ENSBTAP00000055125/1-907 PGPATPPKAT PGPATPPKAM PGPATPPKAM LGPATTPKAV PGPATTPKAT bmy_00085T0/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 701 750 BACU017988/1-578 ---------- ---------- ------PARE GGAPKPAREG GAPKPAREGG ENSP00000341368/1-1188 SGPAIASTAT TLPTTTSQLM AEKDSGPAGQ PEKPASQEVS TPSQARGEGS ENSBTAP00000055125/1-907 SGPATPPKAT PLPITSSQLI AEKNLVPAGQ WEKPEHEELA VPSKPEVEGH bmy_00085T0/1-750 ---------- ---------- -EKNLVPAGQ WEKPEHQELA VPSKSEAEGR ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 751 800 BACU017988/1-578 APKPAR---- ---------- -----EGGAP ---KPAREGG APK------- ENSP00000341368/1-1188 PSEATRLPTQ GARSSAAFPP KTSPGGGEVP CLYKPHCHQS SLSREVAVVM ENSBTAP00000055125/1-907 SSETSKPPTQ GALSSPAFPP KISPGREEVP CLYKPHCSQN SSSREVAVVM bmy_00085T0/1-750 SSETSK-PTQ GALSSPALPP KISPGREEVP FLYKPHRSQN SPSRDVAVVM ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 801 850 BACU017988/1-578 ---------- ---------- ---PAREGGA PKPARE---- ---------- ENSP00000341368/1-1188 PTLARGGAAG PGEPVEVKEP PGLPAKPPAS AQPTDELLRH PVTGEVVERG ENSBTAP00000055125/1-907 PTLSRGEAAG SGKPVAVKEP QELPPKAPVS SQAADELLRH PVTGEVVERG bmy_00085T0/1-750 PTLSRGEAVG SGKPVEVKEP QGLPAKPPAS AQPAEELLRH PVTGEVVEQG ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 851 900 BACU017988/1-578 ---------- ----GGAPKP AREGGAPKPA REGGAPKPAR EGG------- ENSP00000341368/1-1188 SPMALLLAAR QRAQKGRSVG AALGRSSLPG SLRDHSHQAE ASSDSIFHSQ ENSBTAP00000055125/1-907 SPMALLLAAK QRAQKGRPRG AALGRSSLPG SLQGPSQP-K AGSDTILYNE bmy_00085T0/1-750 SAMALLLAAR QRAQKGRSRG AALGQSSLPG SLRRHTQP-R AGSDSIFYND ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 901 950 BACU017988/1-578 --------AP KPAREGGAPK PAREGGAPKP AREGGAPKPA REGGAPKPAR ENSP00000341368/1-1188 GTPNSFTVVP KLPKEAEKDS PLTT----EI PNKWG-PRLG RDAEGTELSR ENSBTAP00000055125/1-907 GQPNSFTVVP KVSKETEKVP QLTSPGQPKG LCQWE-LQPR RDPEDTESCS bmy_00085T0/1-750 GQPNSFTVVP KVPKETEKDP QLTSPGQPKV TSQWK-PQPR RDPEGTEPSH ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU017988/1-578 ---------- -----EGGAP KPAREGG--- ---------- ---------- ENSP00000341368/1-1188 RHNWTKPEPQ APVAWERVAP SNLPQGHPLP KSFSSPPSPS NKREEEEEEF ENSBTAP00000055125/1-907 GPSWTKVKPR PPRP-GRDSA SSLLQGRLLP KSFSSPP-SP SHEEDKEEEF bmy_00085T0/1-750 VYSWTKTEPQ APVAWERPAP SSLPQGRLLP KSSSFPP-P- -SHKREEVEL ENSTTRP00000013313/1-190 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU017988/1-578 ----APKPAR EGGAPKP--- -----AREGG APK------- -PAREGGAPK ENSP00000341368/1-1188 NFEVIPPPPE FSNDPEPPAP ALQYLGRQSS PPRNNYSDLR QLPNAGPGAP ENSBTAP00000055125/1-907 NFEVIPPPPE FSNDPEPPAA PLQYLGRRGS PPRNNFSDLG QPANAG---- bmy_00085T0/1-750 NFEVIPPPPE FSNDPAPPPR ALQYLGRRGS PPRNNFSDLG QLADAG---- ENSTTRP00000013313/1-190 ---------- ----PEPPPR ALQYLGRRGS PPQNNFSDLG QLADAG---- 1051 1100 BACU017988/1-578 PAREGGAPKP AREGGAPKPA R-----EG-- G--------- --APKPAREG ENSP00000341368/1-1188 PAL--GFSRF PAGARYAGAG -GLERFSG-- GGRSLIKKRL Y-VGEPHRGP ENSBTAP00000055125/1-907 PPR--VFSHF AD----PGPA RGLERFSGVG GGRSLIKKRL Y-VGEPHRNP bmy_00085T0/1-750 PAC--GFSLF SARAGPSGAA RALDHFSG-- GGRSLIKKRL YVVGETHRSP ENSTTRP00000013313/1-190 PAR--GSSRF SASAGPAGAS MGLGRFSG-- GGRSLIKKRL YVVGETHRSP 1101 1150 BACU017988/1-578 GAPKPAREGG APKPAREG-- --------GA PKPAREGG-A PKPAREGGAP ENSP00000341368/1-1188 GLPHGGTGRS LSSPNCFGPQ -------PGG PEMRRVNS-A GRAPPGGLHA ENSBTAP00000055125/1-907 GPPRGGTGRS LSFPNCFGPQ PGGPFAAPSG PEMRRVNS-A GRGPPGGLHS bmy_00085T0/1-750 RLPRGGTGRS PTSPNCFGPQ PRGPFAAPGG PEMRRVNSTT GRAPPAGLHA ENSTTRP00000013313/1-190 RLPRGGSGRS PTSPSCFGPQ -------PGG PEMRRVNS-T GRAPPAGLHA 1151 1200 BACU017988/1-578 KPAREGGAPK PAREGGAPKP AREGG----- ------APKP ARER------ ENSP00000341368/1-1188 PRLSLEGAAR GAAEAKHKAP GS-------- -ADYGFAPAA GRSPYTTTRY ENSBTAP00000055125/1-907 RKVSLE-APR G--EAKYKAL GGGGG----- -GDYGCTQAT GRSPHNNTQY bmy_00085T0/1-750 RKMSLEGAPR G--EAKYKAP GGGGGGGGGN CGDCGCTPAT RRSPHSNPHY ENSTTRP00000013313/1-190 RNMPLEGGPR G--EAKYKAP GG-------- -GDCGCAPAT RRSPHSNPHY 1201 1250 BACU017988/1-578 GAP------K P--------A REGGAPKCS- ENSP00000341368/1-1188 GSPINTFTVR PGTRHPISYV CSGAHRKATS ENSBTAP00000055125/1-907 GSSINTFTVR PGTRHPISYA YSGAHWKATS bmy_00085T0/1-750 GSSINTFTVR PGTRHPISCA YSGAHRKAPS ENSTTRP00000013313/1-190 GSSVNTFTVR PGTHHPISYA YSGAHRKAPS