KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:39 2014 Check: 00 .. Name: ENSP00000350881/1-662 Len: 1080 Check: 5443 Weight: 1.00 Name: ENSBTAP00000055111/1-579 Len: 1080 Check: 458 Weight: 1.00 Name: BACU009323/1-1048 Len: 1080 Check: 3931 Weight: 1.00 Name: bmy_03443T0/1-374 Len: 1080 Check: 903 Weight: 1.00 Name: ENSTTRP00000000164/1-650 Len: 1080 Check: 2106 Weight: 1.00 // 1 50 ENSP00000350881/1-662 MEGAPTVRQV MNEGDSSLAT DLQEDVEENP SPTVEENNVV -VKKQGPNLH ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 MEGALTVRQV VNERDSSFAA ELQEELEENL SPVVDENNIV SATKQGPNLH bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 MEGALMVRQV INERDSSFAA ELQEELEENL SPVVDENNIV SATKQGPNLH 51 100 ENSP00000350881/1-662 NWSGDWSFWI SSSTYKDRNE EYRRQFTHLP DTERLIADYA CALQRDILLQ ENSBTAP00000055111/1-579 ---------- ---------- ---------- -------DYA CALQRDILLQ BACU009323/1-1048 NWSGDWSFWI SSSAYKDRNE EYKRQFTHLP ETEKLIADYA CALQRDILLQ bmy_03443T0/1-374 ---------- ---------- ---------- ---------- TGLKR----- ENSTTRP00000000164/1-650 NWSGDWTTIV SSSAYKDRNE EYKRQFTHLP DTEKLIADYA CALQRDILLQ 101 150 ENSP00000350881/1-662 GRLYLSENWL CFYSNIFRWE TTISIALKNI TFMTKEKTAR LIPNAIQIVT ENSBTAP00000055111/1-579 GRLYLSEN-V CFYSNIFRWE TTISIDLKNI TFITKEKTAR LILNAIQIVT BACU009323/1-1048 GRLYLSENWL CFYSNIFRWE TTISIALKNI TFMTKEKTAR LIPNAIQIFT bmy_03443T0/1-374 ---------- --------W- ---------- ---------- ---------- ENSTTRP00000000164/1-650 GRLYLSENWL CFYSNIFRWE TTISIALKNI TFMTKEKTAR LIPNAIQIFT 151 200 ENSP00000350881/1-662 ESEK----FF FTSFGARDRS YLSIFRLWQN VLLDKSLTRQ EFWQLLQQNY ENSBTAP00000055111/1-579 EGEKKLNCSF CTVFPLRDLM YVFLIALWEI IILNKGLTRQ EFWQLLQEDY BACU009323/1-1048 EGEK----FF FTSFAARDRS YLSIFRLWQN VLLDKSLTRQ EFWQLLQQNY bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 EGEK----FF FTSFAARDRS YLSIFRLWQN VLLDKSLTRQ EVWQLLQQNY 201 250 ENSP00000350881/1-662 GTELGLNAEE MENLSLSIED -VQPRSPGRS SLDDSGERDE KLSKSISFTS ENSBTAP00000055111/1-579 GTELGLHAEE MENFSLSIED TVRPRSLGRS SLDDYGERDE KLSKSISFTR BACU009323/1-1048 GTELGLNAEE MENLSLSIED NVQPRSPRRS SLDGCGERDE KLSKPISFTR bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 GTELGLNAEE MENLSLSIED NVQPRSPRRS SLDDCGERDE KLSKPISFTR 251 300 ENSP00000350881/1-662 ESISRVSETE SFDGNSSKGG LGKEESQNEK QTKKSLLPTL EKKLTRVPSK ENSBTAP00000055111/1-579 ESISRASESE SIEGNSPKGG LWKEEPQSEK QIKSPSLTS- EKRLSRQSSK BACU009323/1-1048 ESISRVSETE SIDGNPPKG- --------PC ELVIPCLP-- ---------- bmy_03443T0/1-374 ---------- ---------G LGKEEPQSEK QIKSPSLTS- EKRLSRLSXK ENSTTRP00000000164/1-650 ESISRVSETE SIDVNPQKGG LGKEEPQSEK QIKSPSLTS- EKRLSRLSSK 301 350 ENSP00000350881/1-662 SLDLNKNEYL SLDKSSTSDS VDEENVPEKD LHGRLFINRI FHISADRMFE ENSBTAP00000055111/1-579 SLDLNKNEYL SLDKSSTSDS VDEENILEKD LHGRLYINRV FHISAERMFE BACU009323/1-1048 -------EPL TIGRSTLAPS GQTQNIPEKD LHGRLYINRV FRISAERMFE bmy_03443T0/1-374 SLDLNKNEYL SLDKSSTSDS VDEENIPEKD LHGRLYINRV FRISAERMFE ENSTTRP00000000164/1-650 SLDLNKNEYL SLDKSSTSDS VDEENIPEKD LHGRLYINRV FHISAERMFE 351 400 ENSP00000350881/1-662 LLFTSSRFMQ KFASSRNIID VVSTPWTAEL GGDQLRTMTY TIVLNSPLTG ENSBTAP00000055111/1-579 LLFTSSRFMQ RFSNSRNIID VVSTPWNVEP GGDRLRTMTY TIVLNNPLTG BACU009323/1-1048 LLFTSSRFMQ IFASSRNIID VVSTPWNVEP GGDQLRTMTY TIVLNNPLTG bmy_03443T0/1-374 LLFTSSRFMQ IFASSRNIID VVSTPWNVEP GGDQLRTMTY TIVLNNPLTG ENSTTRP00000000164/1-650 LLFTSSRFMQ IFASSRNIID IVSTPWNVEP GGDQLRTMTY TIVLNNPLTG 401 450 ENSP00000350881/1-662 KCTAATEKQT LYKESREARF YLVDSEVLTH DVPYHDYFYT VNRYCIIRSS ENSBTAP00000055111/1-579 KCTTATEKQR LYKESWEAQF YLVDAEVLTH DVPYHDYFYT LNRYCIIPSS BACU009323/1-1048 KCTTATEKQR LYKESREAQF YLVDSEVLTH DVPYHDYFYT LNRYYIIRSS bmy_03443T0/1-374 KCTTATEKQS LI-------- ---------- ---------- ---------T ENSTTRP00000000164/1-650 KCTTATEKQR LYKESREAQF YLVDSEVLAH DVPYHDYFYT LNRYYIIRSS 451 500 ENSP00000350881/1-662 KQKCRLRVST DLKYRKQPWG LVKSLIEKNS WSSLEDYFKQ LESDLLIEES ENSBTAP00000055111/1-579 KQKCRLRVST DLKYKKQPWA IIKSLIEKNS WSSLADYFKQ LESDLLMEES BACU009323/1-1048 KQKCRLRVST DLKYKKQPWA VVKSLIEKNS WSSLADYFKQ LESDLLTEES bmy_03443T0/1-374 LEDGQNRVST DLKYKKQPWA IVKSLIEKNS WSSLADYFKQ LESDLLTEES ENSTTRP00000000164/1-650 KQKCRLRVST DLKYRKQPWA IVKSLIEKNS WSSLADYFKQ LESDLLMEES 501 550 ENSP00000350881/1-662 VLNQAIEDPG KLTGLRRRRR TFNRTAETVP KLSSQHSSGD VGLGAKGDIT ENSBTAP00000055111/1-579 MVNQSMEDPG KLTGLRRRRR TFNRTAETAP KISSQRSSGD MSLEAKGDIT BACU009323/1-1048 MVNQSIEDPG KLSGLRRRRR TVNRTAETAA KLSSQRSSGD LGLDAKGDIT bmy_03443T0/1-374 MVNQSIEDPG KLSGLRRRRR TVNRTAETAA KLSSQRSSGD LGLDAKGDIT ENSTTRP00000000164/1-650 MVNQPIEDPG KLSGLRRRRR TVNRTAETAP KLSSQRSSGD LGLDAKGDIT 551 600 ENSP00000350881/1-662 GKKKEMENYN VTLIVVMSIF VLLLVLLNVT LFLKLSKIEH AAQSFYRLRL ENSBTAP00000055111/1-579 GKKKEIESYN TVLIVVMSIF LLLLVLLNVM LSLKLSKIEY AAQSVYRLHL BACU009323/1-1048 GKKKEVESYN TVLIVVMSIF LLLLVLLNVT LFLKLSKIEY AAQSFYRLHL bmy_03443T0/1-374 GKKKEIESYN TVLIVVMSIF LLLLVLLNVT LFLKLSKIEY AAQSFYRLHL ENSTTRP00000000164/1-650 ---------- ---IVVMSIF LLLLVLLNVT LFLKLSKIEY AAQSFYRLHL 601 650 ENSP00000350881/1-662 QEEKSLNLAS DMVSRAETIQ KNKDQAHRLK GVLRDSIVML EQ-------- ENSBTAP00000055111/1-579 QEEKSLNLAS DMVSRVEAVQ KSKGQAHRLK GVLRDSIVTL EQ-------- BACU009323/1-1048 QEEKSVNLAS DMASRAETIQ KSKDQAHRLK GVLRDSIVML EQVEIMTKKG bmy_03443T0/1-374 QEEKSVNLAS DMASRAENIQ KSKDQAHRLK GVLQDSIVML EQV------- ENSTTRP00000000164/1-650 QEEKSVNLAS DTVSRAENIQ KSKDQAHRLK GVLRDSIVML EQ-------- 651 700 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 SMKPGKKNKA EEPELEPLCC CEYIDRNGEK NHVAACLCDC QDLDEGCDRW bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 ITCKSVQPET YERIMDTISD RLRIPWLRGA RKVNISLLPP LFLLPVFLRV bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 ASWHFLLGVV VLTSLPVLAL WYYYLTHRRK EQTLFFLSLG LFSLGYMYYV bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000350881/1-662 ---------- --------LK SSLIM----- ---------- ---------- ENSBTAP00000055111/1-579 ---------- --------LK SSLIM----- ---------- ---------- BACU009323/1-1048 FLQEVVPRGR VGPTQLAVLT CGLLLILLAL CRAKKDPGYL RSPANGDRSL bmy_03443T0/1-374 ---------- --STSVYHLK SSLIM----- ---------- ---------- ENSTTRP00000000164/1-650 ---------- --------LK SSLIM----- ---------- ---------- 851 900 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 SGSHTEYLNR TGPEKPKGFP GADPAGGLNN RAPKDEPKGC PRTSAGSPAT bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ---------- BACU009323/1-1048 GKEDWCAKCR LVRPARAWHC RICGFCVRRM DHHCVWINSC VGESNHQAFM bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000350881/1-662 ---------- ---LQKTFDL LNKNKT---- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---LQRTFDL LSKNKT---- ---------- ---------- BACU009323/1-1048 LALLIFLLTS VYGITLTLDT ICTDRSVFTA LFYCPGVYAN YSSALCFTCV bmy_03443T0/1-374 ---------- ---LQRTFDL LNKNKT---- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---LQRTFDL LNKNKT---- ---------- ---------- 1001 1050 ENSP00000350881/1-662 ---------- ---------- ---------- ---------- ----GMAVES ENSBTAP00000055111/1-579 ---------- ---------- ---------- ---------- ----GMTIQS BACU009323/1-1048 WYSVIIVGGM AYIFLIQLIN ISYNVTEREV QQALRQKTGR RLLCGLIVDT bmy_03443T0/1-374 ---------- ---------- ---------- ---------- ----GMAVQS ENSTTRP00000000164/1-650 ---------- ---------- ---------- ---------- ----GMAVQS 1051 1100 ENSP00000350881/1-662 ---------- ---------- ---------- ENSBTAP00000055111/1-579 ---------- ---------- ---------- BACU009323/1-1048 GQYNRGFLRN WHQFSTLGTR PFHHPAEDIV bmy_03443T0/1-374 ---------- ---------- ---------- ENSTTRP00000000164/1-650 ---------- ---------- ----------