KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:50 2014 Check: 00 .. Name: ENSBTAP00000054746/1-607 Len: 607 Check: 9357 Weight: 1.00 Name: ENSP00000359520/1-604 Len: 607 Check: 1541 Weight: 1.00 Name: ENSTTRP00000011207/1-604 Len: 607 Check: 2629 Weight: 1.00 Name: bmy_14140T0/1-464 Len: 607 Check: 4749 Weight: 1.00 Name: BACU012411/1-487 Len: 607 Check: 4814 Weight: 1.00 // 1 50 ENSBTAP00000054746/1-607 YFRISFSFLC PASWYFTVPT VSPFSRQRVA FLGLFFISCL LLLMLIMDFR ENSP00000359520/1-604 MARISFSYLC PASWYFTVPT VSPFLRQRVA FLGLFFISCL LLLMLIIDFR ENSTTRP00000011207/1-604 MARISFSYLC PASWYFTVPT VSPFPRQRVA LLGLFFISCL LLLMLIMDFR bmy_14140T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU012411/1-487 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000054746/1-607 HWGASSPRDR QYERLRYLAR VGDLEATDTE DPDLNYGLVV DCGSSGSRIF ENSP00000359520/1-604 HWSASLPRDR QYE--RYLAR VGELEATDTE DPNLNYGLVV DCGSSGSRIF ENSTTRP00000011207/1-604 HWGASLPRDR QYE--RYLAR VGDLEATDTE DPNLNYGLVV DCGSSGSRIF bmy_14140T0/1-464 ---------- -----RYLAR VGDLEATDTE DPNLNYGLVV DCGSSGSRIF BACU012411/1-487 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000054746/1-607 VYFWPRHNGN PHDLLDIKQM RDRNSQPVVK KIKPGISAMA DTPEHASDYL ENSP00000359520/1-604 VYFWPRHNGN PHDLLDIKQM RDRNSQPVVK KIKPGISAMA DTPEHASDYL ENSTTRP00000011207/1-604 VYFWPRHNGN PHDLLDIKQM RDRNSQPVVK KIKPGISAMA DTPEHASDYL bmy_14140T0/1-464 VYFWPRHNGN PHDLLDIKQM RDRNSQPVVK KIKPGISALA DTPEHASDYL BACU012411/1-487 ---------- ---------M RDRNSQPVVK KIKPGISAMA DTPEHASDYL 151 200 ENSBTAP00000054746/1-607 RPLLSFAAAH VPVRKHKETP LYILCTAGMR LLPERKQLAI LADLVKDLPL ENSP00000359520/1-604 RPLLSFAAAH VPVKKHKETP LYILCTAGMR LLPERKQLAI LADLVKDLPL ENSTTRP00000011207/1-604 RPLLSFAAAH VPVRKHKETP LYILCTAGMR LLSERKQLAI LADLVKDLPL bmy_14140T0/1-464 RPLLSFAAAH VPVRKHKETP LYILCTAGMR LLSERKQLAI LADLVKDLPL BACU012411/1-487 RPLLSFAAAH VPVRKHKETP LYILCTAGMR LLSERKQLAI LADLVKDLPL 201 250 ENSBTAP00000054746/1-607 EFDFLFSQSQ AEVISGKQEG VYAWIGINFV LGRFDHEDEA DAEAPQELVT ENSP00000359520/1-604 EFDFLFSQSQ AEVISGKQEG VYAWIGINFV LGRFDHEDES DAEATQELAA ENSTTRP00000011207/1-604 EFDFLFSQSQ AEVISGKQEG VYAWIGINFV LGRFDHEDES DAEAPQELAT bmy_14140T0/1-464 EFDFLFSQSQ AEVISGKQEG VYAWIGINFV LGRFDHEDES DAEAPQELAT BACU012411/1-487 EFDFLFSQSQ AEVISGKQEG VYAWIGINFV LGRFDHEDES DAEAPQELAT 251 300 ENSBTAP00000054746/1-607 GRRRTVGILD MGGASLQIAY EVPTSTSVLS PQEEEAAKIL LAEFNLGCDV ENSP00000359520/1-604 GRRRTVGILD MGGASLQIAY EVPTSTSVLP AKQEEAAKIL LAEFNLGCDV ENSTTRP00000011207/1-604 GRRRTVGILD MGGASLQIAY EVPTSTSVLS PQQEEAAKIL LAEFNLGCDV bmy_14140T0/1-464 GRRRT----- ---------- ---------- ---EEAAKIL LAEFNLGCDV BACU012411/1-487 GRRRTVGILD MGGASLQIAY EVPTSTSVLS PQQEEAAKIL LAEFNLGCDV 301 350 ENSBTAP00000054746/1-607 QHTEHVYRVY VTTFLGFGGN FARQRYEDLV LNETLNKNST VVSEEQLLXP ENSP00000359520/1-604 QHTEHVYRVY VTTFLGFGGN FARQRYEDLV LNETLNKNR- LLGQKTGLSP ENSTTRP00000011207/1-604 QHTEHVYRVY VTTFLGFGGN FARQRYEDLV MNETLNKNR- LLGQKTGLSP bmy_14140T0/1-464 QHTEHVYRVY VTTFLGFGGN FARQRYEDLV MNETLNKNR- LLGQKTGLSP BACU012411/1-487 QHTEHVYRVY VTTFLGFGGN FARQRYEDLV MNETLNKNR- LLGQKTGLSP 351 400 ENSBTAP00000054746/1-607 DNPFLDPCLP VGLTDVVERN SQVLHVRGRG DWAACGAMLS PLLARSNTSQ ENSP00000359520/1-604 DNPFLDPCLP VGLTDVVERN SQVLHVRGRG DWVSCGAMLS PLLARSNTSQ ENSTTRP00000011207/1-604 DNPFLDPCLP VGLTDVVERN SQVLHVRGRG DWVACGAMLS PLLARSSTSQ bmy_14140T0/1-464 DNPFLDPCLP VGLTDVVERS SQVLHVRGRG DWVACGAMLS PLLARSNTSQ BACU012411/1-487 DNPFLDPCLP VGLTDVVERS SQVLHVRGRG DWVACGAMLS PLLARSNTSQ 401 450 ENSBTAP00000054746/1-607 ASLNGIYQSP IDFNNSEFYG FSEFFYCTED VLRIGGRYHG PTFAKAAQDY ENSP00000359520/1-604 ASLNGIYQSP IDFNNSEFYG FSEFFYCTED VLRIGGRYHG PTFAKAAQDY ENSTTRP00000011207/1-604 ASLNGIYQSP IDFNNSEFYG FSEFFYCTED VLRIGGRYHG PTFAKAAQDY bmy_14140T0/1-464 ASLNGIYQSP IDFNNSEFYG FSEFFYCTED VLRI------ ---------- BACU012411/1-487 ASLNGIYQSP IDFNNSEFYG FSEFFYCTED VLRIGGRYHG PTFAKAAQDY 451 500 ENSBTAP00000054746/1-607 CGMAWSVLTQ RFKNGLFSSH ADEHRLKYQC FKSAWMYQVL HEGFHFPYDY ENSP00000359520/1-604 CGMAWSVLTQ RFKNGLFSSH ADEHRLKYQC FKSAWMYQVL HEGFHFPYDY ENSTTRP00000011207/1-604 CGMAWSVLTQ RFKNGLFSSH ADEHRLKYQC FKSAWMYQVL HEGFHFPYDY bmy_14140T0/1-464 ---------- ---------- ---------- ---AWMYQVL HEGFHFPYDY BACU012411/1-487 CGMAWSVLTQ RFKNGLFSSH ADEHRLKYQC FKSAWMYQVL HEGFHFPYDY 501 550 ENSBTAP00000054746/1-607 PNLQTAQLVY DREVQWTLGA ILYKTRFLPL RDLRQEGVRQ AHGNWFRLSF ENSP00000359520/1-604 PNLRTAQLVY DREVQWTLGA ILYKTRFLPL RDLRQEGVRQ AHGSWFRLSF ENSTTRP00000011207/1-604 PNLQTAQLVY DREVQWTLGA ILYKTRFLPL RELRQEGARQ AHGSWFRLSF bmy_14140T0/1-464 PNLQTAQLVY DREVQWTLGA ILYKTRFLPL RDLRQEGARQ AHGSWFRLSF BACU012411/1-487 PNLQTAQLVY DREVQWTLGA ILYKTRFLPL RDLRQEGARQ AHGSWFRLSF 551 600 ENSBTAP00000054746/1-607 VYNHYLFFAC ILVVLLAIIL YLLRLRRIHH RQTRASAPLN LLWIEEVVPM ENSP00000359520/1-604 VYNHYLFFAC ILVVLLAIFL YLLRLRRIHH RQTRASAPLD LLWLEEVVPM ENSTTRP00000011207/1-604 VYNHYLFFAC ILVVLLAIIL YLLRLRRIHH RQSRASTPLD LLWIEEVVPM bmy_14140T0/1-464 VYNHYLFFAC ILVVLLAIIL YLLRLRRIHH RQSRASTPLD LLWIEEVVPM BACU012411/1-487 VYNHYLFFAC ILVVLLAIIL YLLRLRRIHH RQSRASTPLD LLWIEEVVPM 601 650 ENSBTAP00000054746/1-607 IGVQVGP ENSP00000359520/1-604 MGVQVGP ENSTTRP00000011207/1-604 IGVQVGP bmy_14140T0/1-464 IGVQVGP BACU012411/1-487 IGVQVGP