KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:59 2014 Check: 00 .. Name: bmy_03353T0/1-380 Len: 616 Check: 182 Weight: 1.00 Name: BACU002911/1-566 Len: 616 Check: 2141 Weight: 1.00 Name: ENSTTRP00000007643/1-545 Len: 616 Check: 364 Weight: 1.00 Name: ENSBTAP00000054378/1-560 Len: 616 Check: 9083 Weight: 1.00 // 1 50 bmy_03353T0/1-380 MLQGEARGGF GRRGEGMERI QSEPFQPQLR GSTSALGCPL VTACVPPTGD BACU002911/1-566 ---------M RLRNGAFLTL LLFCL----- --CAFLSLSW YAALSGQKGD ENSTTRP00000007643/1-545 ---------G SHVAGITDRL --------TQ GATSAVCCPL VTACVPPTGD ENSBTAP00000054378/1-560 --ASRTAGGR RVLDGSLDVL PPMCVLTHSG GSRSALGCPL VTACTPQ-GD 51 100 bmy_03353T0/1-380 VVDVYQREFL ALRDRLHAAE QESLKRSKEL NLVLDEIKRA VSERQALRDG BACU002911/1-566 VVDVYQREFL ALRDRLHAAE QESLKRSKEL NLVLDEIKRA VSERQALRDG ENSTTRP00000007643/1-545 VVDVYQREFL ALRDRLHAAE QESLKRSKEL NLVLDEIKRA VSERQALRDG ENSBTAP00000054378/1-560 VVDVYQREFL ALRDRLHAAE QESLKRSKEL NLVLDEIKRA MSERQALRDG 101 150 bmy_03353T0/1-380 DSNRTWGRLT EDPRLKPWNV SHKHVLHLPT VFHHLPHLLA KESSLQPAVR BACU002911/1-566 DSNRTWGRLT EDPRLKPWNV SHKHVLHLPT VFHHLPHLLA KESSLQPAVR ENSTTRP00000007643/1-545 DSNRTWGRLT EDPRLKPWNV SHKHVLHLPT VFHHLPHLLA KESSLQPAVR ENSBTAP00000054378/1-560 DSNRTWGRLP EDPRLKPWNV SHKHVLHLPT VFHHLPHLLA KESSLQPAVR 151 200 bmy_03353T0/1-380 VGQGRTGGRG GAQEGRVAGG GTIPTQCPVP TLRVPAVSVV MGIPSVRREV BACU002911/1-566 VGQGRTG--- ---------- ---------- ------VSVV MGIPSVRREV ENSTTRP00000007643/1-545 VGQGRTG--- ---------- ---------- ------VSVV MGIPSVRREV ENSBTAP00000054378/1-560 VGQGRTG--- ---------- ---------- ------VSVV MGIPSVRREV 201 250 bmy_03353T0/1-380 HSYLTDTLHS LISELSPQEK EDSVIVVLIA EASGLGHGSR GHSEEDTRHK BACU002911/1-566 HSYLTDTLHS LISELSPQEK EDSVIVVLIA EASGLGHGSR GHSEEDTRHK ENSTTRP00000007643/1-545 HSYLTDTLHS LISELSPQEK EDSVIVVLIA E--------- --TDPQYTSL ENSBTAP00000054378/1-560 HSYLTDTLHS LISELSPQEK EDSVIVVLIA E--------- --TDPQYTSL 251 300 bmy_03353T0/1-380 ITRRMKTATF RRKKLSEVQS FPTEIHSGLL EVISPSPHFY PDFSRLRESF BACU002911/1-566 ITRRMKTATF RRRKLSEVQS FPTEIHSGLL EVISPSPHFY PDFSRLRESF ENSTTRP00000007643/1-545 VTENIKAL-- ---------- FPTEIHSGLL EVISPSPHFY PDFSRLRESF ENSBTAP00000054378/1-560 VTENIKAL-- ---------- FPTEIHSGLL EVISPSPHFY PDFSRLRESF 301 350 bmy_03353T0/1-380 GDPKERVRWR TKQNLDYCFL MMYAQSKGIY YVQLEDDIIA KPNYLSTMKN BACU002911/1-566 GDPKERVRWR TKQNLDYCFL MMYAQSKGIY YVQLEDDIIA KPNYLSTMKN ENSTTRP00000007643/1-545 GDPKERVR-R TKQNLD-CFF MMYAQSKGIY YVQLEDDIIA KPNYLSTMKN ENSBTAP00000054378/1-560 GDPKERVRWR TKQNLDYCFL MMYAQSKGIY YVQLEDDIIA KPNYLSTMKN 351 400 bmy_03353T0/1-380 FALQQPSEDW MILEFSQLGF IG-------- ---------- ---------- BACU002911/1-566 FALQQPSEDW MILEFSQLGF IGKMFKSLDL SVIVEFILMF YRDKPIDWLL ENSTTRP00000007643/1-545 FALQQPSEDW MILEFSQLGF IGKMFKSLDL SIIVEFILMF YRDKPIDWLL ENSBTAP00000054378/1-560 FALQQPSEDW MILEFSQLGF IGKMFKSLDL SVIVEFILMF YRDKPIDWLL 401 450 bmy_03353T0/1-380 ---------- ---------- ---------- ---------- ---------- BACU002911/1-566 DHILWVKVCN PEKDAKHCDR QKANLRIRFK PSLFQHVGTH SSLAGKIQKL ENSTTRP00000007643/1-545 DHILWVKVCN PEKDAKHCDR QKANLRIRFK PSLFQHVGTH SSLAGKIQKL ENSBTAP00000054378/1-560 DHILWVKVCN PEKDAKHCDR QKANLRIRFK PSLFQHVGTH SSLAGKIQKL 451 500 bmy_03353T0/1-380 ---------- ----VPPPS- ---------- ---------- ---------- BACU002911/1-566 KDKDFGKQAL RKEHVNPPAE VSTSLKTYQH FTLEKAYLRE DFFWAFTPAA ENSTTRP00000007643/1-545 KDKDFGKQAL RKEHVNPPAE VSTSLKTYQH FTLEKAYLRE DFFWAFTPAA ENSBTAP00000054378/1-560 KDKDFGKHAL RMEHVNPPAE VSTSLKTYQH FTLEKAYLHE -FFWAFTPSA 501 550 bmy_03353T0/1-380 ---------- ---------- ---------- --------LP H--------- BACU002911/1-566 GDFIRFRFFQ PLRLERFFFR SGNIEHPEDK LFNTSVEVLP FDNPQSDKEA ENSTTRP00000007643/1-545 GDFIRFRFFQ PLRLERFFFR SGNIEHPEDK LFNTSVEVLP FDNLQSDKEA ENSBTAP00000054378/1-560 GDFIRFRFFQ PLRLERFFFR SGNIEHPEDK LFNTSVEVLP FDNPQSDKEA 551 600 bmy_03353T0/1-380 ---------- ---------- ---------- ---------- ---------- BACU002911/1-566 LQEGRSATLQ YPRSSDGYLQ IGSFYKGVAQ GEVDPAFGPL EALRLSIQTD ENSTTRP00000007643/1-545 LQEGRSATLQ YPRSSDGYLQ IGSFYKGVAQ GEVDPAFGPL EALRLSIQTD ENSBTAP00000054378/1-560 LQEGHSVTLQ YPRSPDGYLQ IGSFYKGVAQ GEVDPAFGPL EALRLSIQTD 601 650 bmy_03353T0/1-380 ---------- ------ BACU002911/1-566 SPVWVILSEV T----- ENSTTRP00000007643/1-545 SPVWVILSEI FLKKAD ENSBTAP00000054378/1-560 SPVWVILSEI FLKKAD