KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:23:49 2014 Check: 00 .. Name: ENSP00000357301/1-374 Len: 388 Check: 962 Weight: 1.00 Name: ENSBTAP00000054292/1-355 Len: 388 Check: 2929 Weight: 1.00 Name: bmy_03398T0/1-183 Len: 388 Check: 1724 Weight: 1.00 Name: BACU003953/1-288 Len: 388 Check: 4418 Weight: 1.00 // 1 50 ENSP00000357301/1-374 MPTLNTSASP PTFFWANASG GSVLSADDAP MPVKFLALRL MVALAYGLVG ENSBTAP00000054292/1-355 ---------- ---------- ---------- ---GFLALRV SVALAYGLVG bmy_03398T0/1-183 ---------- ---------- ---------- ---------- ---------- BACU003953/1-288 MPTPNTSVPP PAF-WVNTSG GSVLSADEAM MPVGLLALK- -VALAYGLVG 51 100 ENSP00000357301/1-374 AIGLLGNLAV LWVLSNCARR APGPPSDTFV FNLALADLGL ALTLPFWAAE ENSBTAP00000054292/1-355 AVGLLGNSAV LWVLGNCAQR APCPPSDTFV FNLALADLGL ALTLPFWAAE bmy_03398T0/1-183 ---------- ---------- ---------- ---------- ---------- BACU003953/1-288 AIGLLGNLAV LWVL------ ---------- ---------- --------AE 101 150 ENSP00000357301/1-374 SALDFHWPFG GALCKMVLTA TVLNVYASIF LITALSVARY WVVAMAAGPG ENSBTAP00000054292/1-355 SALDFHWPFG GALCKMVLTA TVLNIYASIF LITALSVARY WVVAMAAGPG bmy_03398T0/1-183 ---------- ---------- ---------- ---------- ----MAAGPG BACU003953/1-288 LALDFHWPFG GALCKMVLTA TVLNIYASIF LITALSVAQY WVVAMAAGPG 151 200 ENSP00000357301/1-374 THLSLFWARI ATLAVWAAAA LVTVPTAVFG VEGEVCGVRL CLLRFPSRYW ENSBTAP00000054292/1-355 THLSLFWARV ATLAMWVAAS LVTVPTAVFG AEGEVSGVRL CLLRFPSRYW bmy_03398T0/1-183 THLLLFWARV ANLAVWVAAA LVTVPTAVFG AKGEVTGVRL CLLRFPSRYW BACU003953/1-288 THLSLFWARV ATLAVWVAAA LVTVPMAVFG AKGEVTGMRL CLLRFPSRYW 201 250 ENSP00000357301/1-374 LGAYQLQRVV LAFMVPLGVI TTSYLLLLAF LQRRQRRRQD SRVVARSVRI ENSBTAP00000054292/1-355 LGAYQLQRVV LAFMVPLSII TTSYLLLLAF LRRRRRRWRD SRGVAHSIRI bmy_03398T0/1-183 LGAYQLQRVV LAFMVPLGII TTSYLLLLAF LRWQQQQRQD SRVVARSIRI BACU003953/1-288 LGAYQLQRVV RAFMLPLGII TTSYLLLLVF LRWRQR--QD SRVVARSIRI 251 300 ENSP00000357301/1-374 LVASFFLCWF PNHVVTLWGV LVKFDLVPWN STFYTIQTYV FPVTTCLAHS ENSBTAP00000054292/1-355 LLASFFLCWF PNHVVTLWGV LVKFDLVPWD STFYTVHTYV FPVTTCLAHT bmy_03398T0/1-183 FLASFFLCWF PNRVVPLWGV LVKSNLVPWD STFYTIHTYV FPITTCLAHX BACU003953/1-288 LLASFFLCWF PNHVVPLWGV LVKSDLVPWD STFYTIHTYV FLITTCLAHS 301 350 ENSP00000357301/1-374 NSCLNPVLYC LLRREPRQAL AGTFRDL--- --------RL RLWPQGGGWV ENSBTAP00000054292/1-355 NSCLNPVLYC LLRQEPRRAL ADTFRRQVKP PPLSGYLPST GSTRPREREV bmy_03398T0/1-183 NSCLNPMLYC FLRREPRRAL ADTFRDL--- ---------- ---------- BACU003953/1-288 NSCLNPMPYC FLRREPRRAL ADTFRDL--- ---------- ---------- 351 400 ENSP00000357301/1-374 QQVALKQVGR RWVASNPRES RPSTLLTNLD RGTPG--- ENSBTAP00000054292/1-355 GLSALMQHPQ AKYALLPWPS LPSYHLSSTR RNLVPTDT bmy_03398T0/1-183 ---------- ---------- ---------- -------- BACU003953/1-288 ---------- ---------- ---------- --------