KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:22:55 2014 Check: 00 .. Name: bmy_14497T0/1-273 Len: 273 Check: 2529 Weight: 1.00 Name: ENSTTRP00000012385/1-229 Len: 273 Check: 9819 Weight: 1.00 Name: ENSP00000217121/1-229 Len: 273 Check: 6137 Weight: 1.00 Name: ENSBTAP00000053870/1-229 Len: 273 Check: 3439 Weight: 1.00 // 1 50 bmy_14497T0/1-273 MDSAGQDINL NSPNKGLLSD SMTDVPVDTA VATQAPAVEG LTDAEAEELR ENSTTRP00000012385/1-229 MDSAGQDINL NSPNKGLLSD SMTDVPVDTA VAAQAPAVEG LTDAEAEELR ENSP00000217121/1-229 MDSAGQDINL NSPNKGLLSD SMTDVPVDTG VAARTPAVEG LTEAEEEELR ENSBTAP00000053870/1-229 MDSAGQDINL NSPNKGLLSD SMTDVPVDTA VAAQAPAVEG LTETEAEELR 51 100 bmy_14497T0/1-273 AELAKVEEEV VTLRQVLAAK ERHCGELKRR LGLSALEGLK QNLSRGWHDV ENSTTRP00000012385/1-229 AELAKVEEEV VTLRQVLAAK ERHCGELKRR LGLSTLEGLK QNLSRGWHDV ENSP00000217121/1-229 AELTKVEEEI VTLRQVLAAK ERHCGELKRR LGLSTLGELK QNLSRSWHDV ENSBTAP00000053870/1-229 AELAKVEEEI VTLRQVLAAK ERHCGELKRK LGLSTLEGLK QNLSRSWHDM 101 150 bmy_14497T0/1-273 QVSNAYVKTS EKLGEWNEKV TQSDLYKKTQ ETLSQAGQKT SAALSTMGSA ENSTTRP00000012385/1-229 QVSNAXXXXX XXXXXXXXXX XXXXXYKKTQ ETLSQAGQKT SAALSTMGSA ENSP00000217121/1-229 QVSSAYVKTS EKLGEWNEKV TQSDLYKKTQ ETLSQAGQKT SAALSTVGSA ENSBTAP00000053870/1-229 QVSNAYMKTS EKLGEWNEKV TQSDLYKKTQ ETLSQAGQKT SAALSTMGSA 151 200 bmy_14497T0/1-273 ISRKLGDMRA RPFSHSFSVT LLGPREGHPG LVLPRRAALR LLCASVVWVG ENSTTRP00000012385/1-229 ISRKLGDMRA RPFSHSFS-- ---------- ---------- ---------- ENSP00000217121/1-229 ISRKLGDMRA HPFSHSFS-- ---------- ---------- ---------- ENSBTAP00000053870/1-229 ISRKLGDMRA RPFSHSFS-- ---------- ---------- ---------- 201 250 bmy_14497T0/1-273 RGLSFLHGEA GPVLALTLLL CSYHASEQQP LHPPLHKYAG HETKVVSGRE ENSTTRP00000012385/1-229 -SHSIRHSIS MPAMRNSATF KSFE------ -----DRVGT IKSKVVSGRE ENSP00000217121/1-229 -SYSIRHSIS MPAMRNSATF KSFE------ -----DRVGT IKSKVVGDRE ENSBTAP00000053870/1-229 -SHSIRHSIS MPAMRNSATF KSFE------ -----DRVGT IKSKVVGGRE 251 300 bmy_14497T0/1-273 NGSDNLPSPT GSGDRPLPDH TPF ENSTTRP00000012385/1-229 NGSDNLPSPT GSGDRPLPDH TPF ENSP00000217121/1-229 NGSDNLPSSA GSGDKPLSDP APF ENSBTAP00000053870/1-229 NGGDNLPSPT GSGDRPLPDH IPF