KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:07:59 2014 Check: 00 .. Name: ENSBTAP00000053666/1-853 Len: 926 Check: 7893 Weight: 1.00 Name: bmy_00559T0/1-875 Len: 926 Check: 4511 Weight: 1.00 Name: BACU015554/1-849 Len: 926 Check: 7774 Weight: 1.00 Name: ENSTTRP00000009602/1-841 Len: 926 Check: 4563 Weight: 1.00 // 1 50 ENSBTAP00000053666/1-853 -MAQTIFE-- ---------- ---A------ ---------- ---------- bmy_00559T0/1-875 MLAQPGFGLQ RRRLQNGADD LRGPGGVFNS DQESIGATCV QGQALDRNQQ BACU015554/1-849 MEVSGKFG-- ---------- ---AGGSLTG EP-------- ---------- ENSTTRP00000009602/1-841 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053666/1-853 ---------- ---------- ----LEGMDN QTVLAVQSLL DGQGAVPDPT bmy_00559T0/1-875 TRXAYFVHHY GVQSIINPDQ ERMGANGMDN QTVLAVQSLL DGQGAVPDPT BACU015554/1-849 ---------- ---------- ----AGGMDN QTVLAVQSLL DGQGAVPDPT ENSTTRP00000009602/1-841 ---------- ---------- ---------N QTVLAVQSLL DGQGAVSDPT 101 150 ENSBTAP00000053666/1-853 GQSVSAPPAI QPLDDEDVFL CGKCKKQFNS LPAFMTHKRE QCQGSALPLA bmy_00559T0/1-875 GQSVXAPPAI QPLVGEREIL ---------- ---------- ---------- BACU015554/1-849 GQSVNAPPAI QPLDDEDVFL CGKCKKQFNS LPAFMTHKRE QCQGSAPPLA ENSTTRP00000009602/1-841 GQSVNAPPAI QPLDDEDVFL CGKCKKQFNS LPAFMTHKRE QCQGSAPPLA 151 200 ENSBTAP00000053666/1-853 TVSLATNSIY TPSAAPSAIQ QAPPPPNRQV FIHSFHLTYI TVPPSPLIQT bmy_00559T0/1-875 ---------- -----PVLGK EKTLEHSRLI S------TYI TVPPSPLIQT BACU015554/1-849 TVSLATNSIY TPSAAPTAVQ QAPPPANR-- ---------- --------QT ENSTTRP00000009602/1-841 TVSLATNSIY TPSAAPTAVQ QAPPPANRQI S------TYI TVPPSPLIQT 201 250 ENSBTAP00000053666/1-853 LVQGNILVSD DVLMSAMSAF TSLDQPMPQG PQPVQSNLNM HPAPNYLAQP bmy_00559T0/1-875 LVQGNILVSD DVLMSAMSAF TSLDQPMPQG PPPVQSSLNM HSAPSYLTQP BACU015554/1-849 LVQGNILVSD DVLMSAMSAF TSLDQPMPQG PPPVQSSLNM HSAPSYLTQP ENSTTRP00000009602/1-841 LVQGNILVSD DVLMSAMSAF TSLDQPMPQG PPPVQSSLNM HSAPSYLTQP 251 300 ENSBTAP00000053666/1-853 PPPPPPPPPL PPPPPPQPPP PPPQSLGPAG RPNPGGNGVV EVYNATAPLT bmy_00559T0/1-875 PPPPPPPPPL PPPPPPQPPP PPSQSLGPPG RPNPGGNGVV EVYSATAPLT BACU015554/1-849 PPPPPPPPPL PPPPPPQPPP PPSQSLGPSG RPNPGGNGVV EVYSATAPLT ENSTTRP00000009602/1-841 PPPPPPPPPL PPPPPPQPPP PPSQSLGPPG RPNPGGNGVV EVYSATAPLT 301 350 ENSBTAP00000053666/1-853 GSGTVEIQAL GMQPYPPLEV PNQCVEAPVY PTPQVYSPGK QGFKPKGPNP bmy_00559T0/1-875 GNGTVEIQAL GMQPYPPLEV PNQCVEAPVY PTPQVYSPGK QGFKPKGPNP BACU015554/1-849 GNGTVEIQAL GMQPYPPLEV PNQCVEAPVY PTPQVYSPGK QGFKPKGPNP ENSTTRP00000009602/1-841 GSGTVEIQAL GMQPYPPLEV PNQCVEAPVY PTPQVYSPGK QGFKPKGPNP 351 400 ENSBTAP00000053666/1-853 AAPMTSATGG TVASFDSPPS LKTRRTK--- ----AAGKPK AQKLKCSYCD bmy_00559T0/1-875 AAPMTSATRG AVATFDSPPS LKTRRTKGSS GLPEAAGKPK AQKLKCSYCD BACU015554/1-849 AAPMTSATRG AVATFDSPPS LKTRRTKGSS GLPEAAGKPK AQKLKCSYCD ENSTTRP00000009602/1-841 AAPMTSATRG AVATFDSPPS LKTRRTKGSS GLPEAAGKPK AQKLKCSYCD 401 450 ENSBTAP00000053666/1-853 KSFTKNFDLQ QHIRSHTGEK PFQCIACGRA FAQKSNVKKH MQTHKVWPPG bmy_00559T0/1-875 KSFTKNFDLQ QHIRSHTGEK PFQCIACGRA FAQKSNVKKH MQTHKVWPPG BACU015554/1-849 KSFTKNFDLQ QHIRSHTGEK PFQCIACGRA FAQKSNVKKH MQTHKVWPPG ENSTTRP00000009602/1-841 KSFTKNFDLQ QHIRSHTGEK PFQCIACGRA FAQKSNVKKH MQTHKVWPPG 451 500 ENSBTAP00000053666/1-853 RSGGTVSRNS VTVQVMALNP SRQEDEDNTG LGQTLSSAPQ PQALPTAGEG bmy_00559T0/1-875 RSGGTVSRNS VTVQVMALNP SRQEDEDSTX LGQTLSSAPQ PQALPTAGEE BACU015554/1-849 RSGGTVSRNS VTVQVMALNP SRQEDEDSTG LGQTLSSAPQ PQALPTAGEE ENSTTRP00000009602/1-841 RSGGTVSRNS VTVQVMALNP SRQEDEDSTG LGQTLSSAPQ PQALPTAGEE 501 550 ENSBTAP00000053666/1-853 EGDKLEAKQV VLIDSSYLCQ FCPSKFSTYF QLKSHMTQHK NEQVYKCVVK bmy_00559T0/1-875 EGDKLEAKQV VLIDSSYLCQ FCPSKFSTYF QLKSHMTQHK NEQVYKCVVK BACU015554/1-849 EGDKLEAKQV VLIDSSYLCQ FCPSKFSTYF QLKSHMTQHK NEQVYKCVVK ENSTTRP00000009602/1-841 EGDKLEAKQV VLIDSSYLCQ FCPSKFSTYF QLKSHMTQHK NEQVYKCVVK 551 600 ENSBTAP00000053666/1-853 SCAQTFPKLD TFLEHIKSHQ EELSYRCHLC GKDFPSLYDL GVHQYSHSLL bmy_00559T0/1-875 SCAQTFPKLD TFLEHIKSHQ EELSYRCHLC GKDFPSLYDL GVHQYSHSLL BACU015554/1-849 SCAQTFPKLD TFLEHIKSHQ EELSYRCHLC GKDFPSLYDL GVHQYSHSLL ENSTTRP00000009602/1-841 SCAQTFPKLD TFLEHIKSHQ EELSYRCHLC GKDFPSLYDL GVHQYSHSLL 601 650 ENSBTAP00000053666/1-853 SQNSPKKDSA VYKCVKCVNK YSTPEALDHH LQTATHNFPC PHCQKVFPCE bmy_00559T0/1-875 PQHSPKKDSA VYKCVKCVNK YSTPEALEHH LQTATHNFPC PHCQKVFPCE BACU015554/1-849 PQHSPKKDSA VYKCVKCVNK YSTPEALEHH LQTATHNFPC PHCQKVFPCE ENSTTRP00000009602/1-841 PQHSPKKDSA VYKCVKCVNK YSTPEALEHH LQTATHNFPC PHCQKVFPCE 651 700 ENSBTAP00000053666/1-853 RYLRRHLPTH GSGGRFKCQV CKKFFRREHY LKLHAHIHSG EKPYKCSVCE bmy_00559T0/1-875 RYLRRHLPTH GSGGRFKCQV CKKFFRREHY LKLHAHIHSG EKPYKCSVCE BACU015554/1-849 RYLRRHLPTH GSGGRFKCQV CKKFFRREHY LKLHAHIHSG EKPYKCSVCE ENSTTRP00000009602/1-841 RYLRRHLPTH GSGGRFKCQV CKKFFRREHY LKLHAHIHSG EKPYKCSVCE 701 750 ENSBTAP00000053666/1-853 SAFNRKDKLK RHMLIHEPFK KYKCPFSTHT GCSKEFNRPD KLKAHILSHS bmy_00559T0/1-875 SAFNRKDKLK RHMLIHEPFK KYKCPFSTHT GCSKEFNRPD KLKAHILSHS BACU015554/1-849 SAFNRKDKLK RHMLIHEPFK KYKCPFSTHT GCSKEFNRPD KLKAHILSHS ENSTTRP00000009602/1-841 SAFNRKDKLK RHMLIHEPFK KYKCPFSTHT GCSKEFNRPD KLKAHILSHS 751 800 ENSBTAP00000053666/1-853 GMKLHKCALC SKSFSRRAHL AEHQRAHTGN YKFRCAGCAK GFSRHKYLKD bmy_00559T0/1-875 GMKLHKCALC SKSFSRRAHL AEHQRAHTGN YKFRCAGCAK GFSRHKYLKD BACU015554/1-849 GMKLHKCALC SKSFSRRAHL AEHQRAHTGN YKFRCAGCAK GFSRHKYLKD ENSTTRP00000009602/1-841 GMKLHKCALC SKSFSRRAHL AEHQRAHTGN YKFRCASCAK GFSRHKYLKD 801 850 ENSBTAP00000053666/1-853 HRCRLGPQKD KDLQARRPPR RRAAPRSGSG GGHKVVTPLP DPLGLEELKD bmy_00559T0/1-875 HRCRLGPQKD KDLQARRPPR RRAAPRSGST GGRKVVTPLP DPLGLEELKD BACU015554/1-849 HRCRLGPQKD KDLQARRPPR RRAAPRSGST GGRKVVTPLP DPLGLEELKD ENSTTRP00000009602/1-841 HRCRLGPQKD KDLQARRPPR RRAAPRSGST GGRKVVTPLP DPLGLEELKD 851 900 ENSBTAP00000053666/1-853 TGAGPMPEAA PGKPPFSEPD AVLSIVVGGT VGGEPELVVP GHAEGLGSNL bmy_00559T0/1-875 TGPGPVPEAA PGKPPFSEPD AVLSIVVGGT VGGEPELVVP GHAEGLGSNL BACU015554/1-849 TGPGPVPEAA PGKPPFSEPD AVLSIVVGGT VGGEPELVVP GHAEGLGSNL ENSTTRP00000009602/1-841 TGPGPVPEAA PGKPPFSEPD AVLSIVVGGT VGGEPELVVP GHAEGLGSNL 901 950 ENSBTAP00000053666/1-853 ALAELQAGAE GSCAMLAVPV YIQASE bmy_00559T0/1-875 ALAELQAGAE GPCAMLAVPV YIQASE BACU015554/1-849 ALAELQAGAE GPCAMLAVPV YIQASE ENSTTRP00000009602/1-841 ALAELQAGAE GPCAMLAVPV YIQASE