KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:56 2014 Check: 00 .. Name: bmy_14432T0/1-950 Len: 1185 Check: 9140 Weight: 1.00 Name: ENSP00000261799/1-1106 Len: 1185 Check: 714 Weight: 1.00 Name: ENSTTRP00000013882/1-1102 Len: 1185 Check: 2993 Weight: 1.00 Name: ENSBTAP00000053664/1-1103 Len: 1185 Check: 7242 Weight: 1.00 Name: BACU013117/1-1111 Len: 1185 Check: 5363 Weight: 1.00 // 1 50 bmy_14432T0/1-950 --------MR PPSAMQAPVL KGQVLLLPLL LLLGPQASCG LVVTPPGPEL ENSP00000261799/1-1106 --------MR LPGAMPALAL KGELLLLSLL LLLEPQISQG LVVTPPGPEL ENSTTRP00000013882/1-1102 --------MR PPSAMRAPVL EGQVLLLPLL LLLGPRASWG LVITPPGPEL ENSBTAP00000053664/1-1103 --------MW LPSAMQAVVL KGRVLLLPLL FLLGPQASWG LAIIPPGPEL BACU013117/1-1111 MCMCVQDTMR PPSAMQAPVL KGQVLLLPLL LLLGPQASCG LVITPPGPEL 51 100 bmy_14432T0/1-950 VLNLSSTFVL TCSGPAPVVW ERMSQKPPQE MTTTQDGTFS SVLTLTNVTG ENSP00000261799/1-1106 VLNVSSTFVL TCSGSAPVVW ERMSQEPPQE MAKAQDGTFS SVLTLTNLTG ENSTTRP00000013882/1-1102 VLNLSSTFVL TCSGPAPVVW ERTSQKPPQE MTTSQDGTFS SVLTLTNVTG ENSBTAP00000053664/1-1103 VLNLSSTFVL TCSGPAPVVW ERMSQKPPQE MTETQDGTFS SVLTLVNVTG BACU013117/1-1111 VLNLSSTFVL TCSGPAPVVW ERMSQKPPQE MTTTQDDTFS SVLTLTNVTG 101 150 bmy_14432T0/1-950 LDTGEYFCTY KGSHGLEASE RKRLYIFVP- ---------- ---------- ENSP00000261799/1-1106 LDTGEYFCTH NDSRGLETDE RKRLYIFVPD PTVGFLPNDA EELFIFLTEI ENSTTRP00000013882/1-1102 LDTGEYFCTY KGSHGLEASE RKRLYIFVPD PTVGFLPVDP EELFIFLTEI ENSBTAP00000053664/1-1103 LDTGEYFCGY KRSHGLEASE RKRLYIFVPD PSVGFLPVDP EELFIFLTEI BACU013117/1-1111 LDTGEYFCTY KGSHGLEASE RKRLYIFVPD PTVGFLPVDP EELFIFLTEI 151 200 bmy_14432T0/1-950 --------VT DPRLVVTLHE KKVDVPLPIA YDHQRGFS-- ---------- ENSP00000261799/1-1106 TEITIPCRVT DPQLVVTLHE KKGDVALPVP YDHQRGFSGI FEDRSYICKT ENSTTRP00000013882/1-1102 TETTIPCRVT DPRLVVTLHE KKVDVPLPIT YDHQRGFSGT FEDKTYVCKT ENSBTAP00000053664/1-1103 TETTIPCRVT DPRLVVMLHE KKVDVPLPIA YDPQRGFSGT FEDKTYICKT BACU013117/1-1111 TETTIPCRVT DPRLVVTLHE KKVDVPLPIA YDHQRGFSGT FEDKTYVCKT 201 250 bmy_14432T0/1-950 ---------- --------VS SINVSVNAVQ TVVRQGENIT IMCIVTGNEV ENSP00000261799/1-1106 TIGDREVDSD AYYVYRLQVS SINVSVNAVQ TVVRQGENIT LMCIVIGNEV ENSTTRP00000013882/1-1102 TIGDREVDSD AYYVYSLQVS SINVSVNAVQ TVVRQGENIT IMCIVTGNEV ENSBTAP00000053664/1-1103 TIGDREVDSD AYHVYSLQVS SINVSVNAVQ TVVRQGENIT IMCIVTGNEV BACU013117/1-1111 TIGDREVDSD AYYVYSLQVS SINVSVNAVQ TVVRQGENIT IMCIVTGNEV 251 300 bmy_14432T0/1-950 VNFEWTYPRM ESGRLVEPVT DFLFEMP-HI RSILHIPSAE LGDSGTYICN ENSP00000261799/1-1106 VNFEWTYPRK ESGRLVEPVT DFLLDMPYHI RSILHIPSAE LEDSGTYTCN ENSTTRP00000013882/1-1102 VNFEWTYPRM ESGRLVEPVT DFLFEMP-HI RSILHIPSAE LGDSGTYICN ENSBTAP00000053664/1-1103 VNFEWTYPRM ESGRLVEPVT DFLFEMP-HI RSILHIPSAE LGDSGTYICN BACU013117/1-1111 VNFEWTYPRM ESGRLVEPVT DFLFEMP-HI RSILHIPSAE LGDSGTYICN 301 350 bmy_14432T0/1-950 VSESVSDHRD EKAINVTVVE SGYVRLLGEL DPVQFAELHR SRTLQVVFEA ENSP00000261799/1-1106 VTESVNDHQD EKAINITVVE SGYVRLLGEV GTLQFAELHR SRTLQVVFEA ENSTTRP00000013882/1-1102 VSESVSDHRD EKAINVTVVE SGYVRLLGEL DPVQFAELHR SRTLQVVFEA ENSBTAP00000053664/1-1103 VSESVSDHRD EKAINVTVVE NGYVRLLGEL DPVQFAELHR SRTLQVVFEA BACU013117/1-1111 VSESVSDHRD EKAINVTVVE SGYVRLLGEL DPVQFAELHR SRTLQVVFEA 351 400 bmy_14432T0/1-950 YPPPTVMWFK DNRTLGDSGA GEVALSTRNV SETR------ ---------- ENSP00000261799/1-1106 YPPPTVLWFK DNRTLGDSSA GEIALSTRNV SETRYVSELT LVRVKVAEAG ENSTTRP00000013882/1-1102 YPPPTVMWFK DNRTLGDSGA GEVALSTRNV SETRYVSELT LVRVKVAEAG ENSBTAP00000053664/1-1103 YPPPTVMWFK DNRTLGDSSA GEIVLSTRNV SETRYVSELT LVRVKVAEAG BACU013117/1-1111 YPPPTVMWFK DNRTLGDSGA GEVALSTRNV SETRYVSELT LVRVKVAEAG 401 450 bmy_14432T0/1-950 ---------- ---------- ---------- --ACPCAGAE REPPCQRGAD ENSP00000261799/1-1106 HYTMRAFHED AEVQLSFQLQ INVPVRVLEL SESHPDSGEQ TVRCRGRGMP ENSTTRP00000013882/1-1102 RYTMRAFHED AEAQLSFQLQ VNXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053664/1-1103 YYTMRAFHED AEAQLSFQLQ VNVPVRVLEL SESHPANGEQ TVRCRGRGMP BACU013117/1-1111 RYTMRAFHED AEAQLSFQLQ VNVPVRVLEL SESHPASGEQ TVRCRGRGMP 451 500 bmy_14432T0/1-950 SP-LSW---- -----PGHAP ATPQLVYLQR PQKVSAGAAS HAAGEQF--- ENSP00000261799/1-1106 QPNIIWSACR DLKRCPRELP PTLLGNSSEE ESQLETNVTY WEEEQEFEVV ENSTTRP00000013882/1-1102 XXXXXXXXXX XXXXCPLELP PTPLGNSSEE ESLLETNVTY WAEEQEFEVV ENSBTAP00000053664/1-1103 QPHLTWSTCS DLKRCPRELP PTPLGNSSEE ESQLETNVTY WAEEQEFEVV BACU013117/1-1111 QPHLSWSTCS DLKRCPLELP PTPLGNSSEE ESLLETNVTY WAEEQEFEVV 501 550 bmy_14432T0/1-950 ------RGGE PAG---DERD ILGRGA-GVR GGEHTAPAPC GS-AAVSALH ENSP00000261799/1-1106 STLRLQHVDR PLSVRCTLRN AVGQDTQEVI VVPHSLPFKV VVISAILALV ENSTTRP00000013882/1-1102 STLRLRRVDQ PLSVRCTLHN LLGQDVQEVT VVPHXXXXXX XXXXXXXXXX ENSBTAP00000053664/1-1103 STLRLRHVDQ PLSVRCTLHN LLGYDVQEVT VVPHSLPFKV VVISAILALV BACU013117/1-1111 STLRLRRVDQ PLSVRCTLHN LLGQDVQEVT VVPHSLPFKV VVISAILALV 551 600 bmy_14432T0/1-950 AAQ------- ----PPGPRR SGGHRGATFP TLQGGGDLGN PGLGGPHDHL ENSP00000261799/1-1106 VLTIISLIIL IMLWQKKPRY EIRWKVIESV SSDGHEYIYV DPMQLPYDST ENSTTRP00000013882/1-1102 XXXXXXXXXX XXXXXXKPRY EIRWKVIESV SSDGHEYIYV DPMQLPYDST ENSBTAP00000053664/1-1103 VLTIISLIIL IMLWQKKPRY EIRWKVIESV SSDGHEYIYV DPMQLPYDST BACU013117/1-1111 VLTIISLIIL IMLWQKKPRY EIRWKVIESV SSDGHEYIYV DPMQLPYDST 601 650 bmy_14432T0/1-950 PHHPHHALAE GRTLGSGAFG QVVEATAHGL SHSQATMKVA VKMLKSTARS ENSP00000261799/1-1106 WELPRDQLVL GRTLGSGAFG QVVEATAHGL SHSQATMKVA VKMLKSTARS ENSTTRP00000013882/1-1102 WELPRDQLVL GRTLGSGAFG QVVEATAHGL SHSQATMKVA VKMLKSTARS ENSBTAP00000053664/1-1103 WELPRDQLVL GRTLGSGAFG QVVEATAHGL SHSQATMKVA VKMLKSTARS BACU013117/1-1111 WELPRDQLVL GRTLGSGAFG QVVEATAHGL SHSQATMKVA VKMLKSTARS 651 700 bmy_14432T0/1-950 SEKQALMSEL KIMSHLGPHL NVVNLLGACT KGGPIFIITE YCRYGDLVDY ENSP00000261799/1-1106 SEKQALMSEL KIMSHLGPHL NVVNLLGACT KGGPIYIITE YCRYGDLVDY ENSTTRP00000013882/1-1102 SEKQALMSEL -IMSHLGPHL NVVNLLGACT KGGPIFIITE YCRYGDLVDY ENSBTAP00000053664/1-1103 SEKQALMSEL KIMSHLGPHL NVVNLLGACT KGGPIYIITE YCRYGDLVDY BACU013117/1-1111 SEKQALMSEL KIMSHLGPHL NVVNLLGACT KGGPIFIITE YCRYGDLVDY 701 750 bmy_14432T0/1-950 LHRNKHTFLQ RCSNKRRPPS AELYSNALPV GLPLPSHVSL PGESDGGYMD ENSP00000261799/1-1106 LHRNKHTFLQ HHSDKRRPPS AELYSNALPV GLPLPSHVSL TGESDGGYMD ENSTTRP00000013882/1-1102 LHRNKHTFLQ RCSNKRHPPS AELYSNALPV GLPLPSHVSL PGESDGGYMD ENSBTAP00000053664/1-1103 LHRNKHTFLQ RCSDKRRPPS AELYSNALPV GLPLPSHVSL PGESDGGYMD BACU013117/1-1111 LHRNKHTFLQ RCSNKRRPPS AELYSNALPV GLPLPSHVSL PGESDGGYMD 751 800 bmy_14432T0/1-950 MSKDESVDYV PMLDMKGDVK YADIESSNYM TPYDNYVPSA PERTCRVTLI ENSP00000261799/1-1106 MSKDESVDYV PMLDMKGDVK YADIESSNYM APYDNYVPSA PERTCRATLI ENSTTRP00000013882/1-1102 MSKDESVDYV PMLDMKGDVK YADIESSNYM APYDNYVPSA PERTCRVTLI ENSBTAP00000053664/1-1103 MSKDESVDYV PMLDMKGDVK YADIESSNYM APYDNYVPSA PERTCRVTLI BACU013117/1-1111 MSKDESVDYV PMLDMKGDVK YADIESSNYM APYDNYVPSA PERTCRVTLI 801 850 bmy_14432T0/1-950 NESPVLSYMD LVGFSYQVAN GMEFLASKNV CVVTVSTVGS WGGGSPSQPG ENSP00000261799/1-1106 NESPVLSYMD LVGFSYQVAN GMEFLASKN- ---------- ---------- ENSTTRP00000013882/1-1102 NESPVLSYTD LVGFSYQVAN GMEFLASKN- ---------- ---------- ENSBTAP00000053664/1-1103 NESPVLSYTD LVGFSYQVAN GMEFLASKN- ---------- ---------- BACU013117/1-1111 NESPVLSYTD LVGFSYQVAN GMEFLASKN- ---------- ---------- 851 900 bmy_14432T0/1-950 CSQYVAPYGI PLVGEDGKCP HTWWPLTPEQ RCIFPKAPDT ESLSPQLPPT ENSP00000261799/1-1106 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013882/1-1102 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053664/1-1103 ---------- ---------- ---------- ---------- ---------- BACU013117/1-1111 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_14432T0/1-950 CVHRDLAARN VLICEGKLVK ICDFGLARDI MRDSNYISKG STFLPLKWMA ENSP00000261799/1-1106 CVHRDLAARN VLICEGKLVK ICDFGLARDI MRDSNYISKG STFLPLKWMA ENSTTRP00000013882/1-1102 CVHRDLAARN VLICEGKLVK ICDFGLARDI MRDSNYISKG STFLPLKWMA ENSBTAP00000053664/1-1103 CVHRDLAARN VLICEGKLVK ICDFGLARDI MRDSNYISKG STFLPLKWMA BACU013117/1-1111 CVHRDLAARN VLICEGKLVK ICDFGLARDI MRDSNYISKG STFLPLKWMA 951 1000 bmy_14432T0/1-950 PESIFNSLYT TLSDVWSFGI LLWEIFTLGG TPYPELPMNE H--------- ENSP00000261799/1-1106 PESIFNSLYT TLSDVWSFGI LLWEIFTLGG TPYPELPMNE QFYNAIKRGY ENSTTRP00000013882/1-1102 PESIFNSLYT TLSDVWSFGI LLWEIFTLGG TPYPELPMNE QFYNAIKRGY ENSBTAP00000053664/1-1103 PESIFNSLYT TLSDVWSFGI LLWEIFTLGG TPYPELPMNE QFYNAIKRGY BACU013117/1-1111 PESIFNSLYT TLSDVWSFGI LLWEIFTLGG TPYPELPMNE QFYNAIKRGY 1001 1050 bmy_14432T0/1-950 ---------- --YEIMQKCW EEKFEIRPPF SQLVLLLERL LGEGYKK--- ENSP00000261799/1-1106 RMAQPAHASD EIYEIMQKCW EEKFEIRPPF SQLVLLLERL LGEGYKKKYQ ENSTTRP00000013882/1-1102 RMAQPAHASD EIYEIMQKCW EEKFEIRPPF SQLVLLLERL LGEGYKKKYQ ENSBTAP00000053664/1-1103 RMAQPAHASD EIYEIMQKCW EEKFEIRPPF SQLVLLLERL LGEGYKKKYQ BACU013117/1-1111 RMAQPAHASD EIYEIMQKCW EEKFEIRPPF SQLVLLLERL LGEGYKKKYQ 1051 1100 bmy_14432T0/1-950 ---------- ---------- ---------- ---------- --PNEGDNDY ENSP00000261799/1-1106 QVDEEFLRSD HPAILRSQAR LPGFHGLRSP LDTSSVLYTA VQPNEGDNDY ENSTTRP00000013882/1-1102 QVDEEFLRSD HPAVLRSQAR LPGFNGLRSP LDTSSVLYTA VQPNEGDNDY ENSBTAP00000053664/1-1103 QVDEEFLRSD HPAILRSQAR LPGFNGLRSP LDSSSVLYTA VQPNEGDNDY BACU013117/1-1111 QVDEEFLRSD HPAVLRSQAR LPGFNGLRSP LDTSSVLYTA VQPNEGDNDY 1101 1150 bmy_14432T0/1-950 IIPLPDPKPE VADEGPLEGS PSLA------ ---------- SPLEPQEEPE ENSP00000261799/1-1106 IIPLPDPKPE VADEGPLEGS PSLASSTLNE VNTSSTISCD SPLEPQDEPE ENSTTRP00000013882/1-1102 IIPLPDPKPE VADEGPLEGS PSLASSALNE VNTSSTISCD SPLEPQEEPE ENSBTAP00000053664/1-1103 IIPLPDPKPE VADEGPLEGS PSLASSTLNE VNTSSTISCD SPLEPQEEPE BACU013117/1-1111 IIPLPDPKPE VADEGPLEGS PSLASSALNE VNTSSTISCD SPLEPQEEPE 1151 1200 bmy_14432T0/1-950 PEPQPESQVE PEP--KRPPD SSCPGPRAEA EDSFL ENSP00000261799/1-1106 PEPQLELQVE PEPELEQLPD SGCPAPRAEA EDSFL ENSTTRP00000013882/1-1102 PEPQPESQVE PEP--KRPPD SSCPGPRAEA EDSFL ENSBTAP00000053664/1-1103 PEPQPASQVE PEP--KWPPD SSCPGPRAEA EDSFL BACU013117/1-1111 PEPQPESQVE PEP--KRPPD SSCPGPRAEA EDSFL