KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:07:26 2014 Check: 00 .. Name: ENSP00000287097/1-1445 Len: 1491 Check: 1037 Weight: 1.00 Name: ENSBTAP00000053585/1-1447 Len: 1491 Check: 42 Weight: 1.00 Name: ENSTTRP00000013707/1-1440 Len: 1491 Check: 4915 Weight: 1.00 Name: bmy_22331T0/1-1074 Len: 1491 Check: 4309 Weight: 1.00 Name: BACU001335/1-1347 Len: 1491 Check: 2528 Weight: 1.00 // 1 50 ENSP00000287097/1-1445 MQGPPLLTAA HLLCVCTAAL AVAPGPRFLV TA---PGIIR PGGNVTIGVE ENSBTAP00000053585/1-1447 MRGLRLLTAA RLFCVWSAAL AAVPGPRFLV TV---PGIIR PGGNVTIGVE ENSTTRP00000013707/1-1440 MRGPRLGTAA RLFCVWSAAL AAAPRPKFLV TA---PGIIR PGGNVTIGVE bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 ---------- ---------M NAASEPIALK THGHREGYVG AGGNDNTDKR 51 100 ENSP00000287097/1-1445 LLEHCPSQVT VKAELLKTAS NLTVSVLEAE GVFEKGSFKT LTLPSLPLNS ENSBTAP00000053585/1-1447 LLEHSPSQVT VKAELRKMAA NRTVSVLEAE GVFEKGSFKT LILPSLPLNS ENSTTRP00000013707/1-1440 LLEHSPSQVT VKAELVKIAA NLAVSVLEAE GVFEKGSFKT LTLPPLPLNS bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 RYGRV----- ---------- ---------- -----GSFKT LILPSLPLNS 101 150 ENSP00000287097/1-1445 ADEIYELRVT GRTQDEILFS NSTRLSFETK RISVFIQTDK ALYKPKQEVK ENSBTAP00000053585/1-1447 ADEMYELRVT GRAQDEILFS NSTRLSFETK RMTVFIQTDK PLYKPKQEVK ENSTTRP00000013707/1-1440 GDEIYELHVT GRAQDEILFS NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 GDEIYELRVT GRAQDEILFS NSTRLSFETK RMTVFIQTDK PLYKPKQEVK 151 200 ENSP00000287097/1-1445 FRIVTLFSDF KPYKTSLNIL IK-------- ---------- ---------- ENSBTAP00000053585/1-1447 FRVVTLFSDF KPYKTFLNIL IK-------- ---------- ---------- ENSTTRP00000013707/1-1440 XXXXXXXXXX XXXXXXXXXX XX-------- ---------- ---------- bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 FRVVTLFSDF KPYKTSLNIL IKPVCPYTTE ISVSNAVTAG GTLFSTLAAL 201 250 ENSP00000287097/1-1445 ---------D PKSNLIQQWL SQQSDLGVIS KTFQLSSHPI LGDWSIQVQV ENSBTAP00000053585/1-1447 ---------D PKSNLIQQWL SEKSDLGVVS KTFQLSSHPI LGDWSIQVQV ENSTTRP00000013707/1-1440 ---------D PKSNLIQQWL SEQSDLGVVS KTFQLSSHPM LGDWSIQVQV bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 PEKLLLLVQD PKSNLIQQWL SEQSDLGVVS KTFQLSSHPI LGDWSIQVQV 251 300 ENSP00000287097/1-1445 NDQTYYQSFQ VSEYVLPKFE VTLQTPLYCS MNSKHLNGTI TAKYTYGKPV ENSBTAP00000053585/1-1447 NDQTYYQSFQ VSEYVLPRSA VLLRLPQSPQ PPTSSTAGSV SLWYTYGKPV ENSTTRP00000013707/1-1440 NDQTYYQSFQ VSEYVLPKFE VTLQTPLYCS LNSVSLNGTV TAKYTYGKPV bmy_22331T0/1-1074 ---------- -----LPKFE VTLQTPLYCS LNSVSLNGTV TAKYTYGKPV BACU001335/1-1347 NDQTYYQSFQ VSEYVLPKFE VALQTPLYCS LNSVSLNGTV TAKYTYGKPV 301 350 ENSP00000287097/1-1445 KGDVTLTFLP LSFWGKKKNI TKTFKINGSA NFSFNDEEMK NVMDSSNGLS ENSBTAP00000053585/1-1447 KGDLTLTFLP LSFWGVKKNI TKTLKINGSA NFSFNDEEMK KVMDFSDGPS ENSTTRP00000013707/1-1440 KGDLTLTFLP LSFWGVKKNI TKTFKINGSA NFSFNDEEMK KVMDFSDGLS bmy_22331T0/1-1074 KGDLTLTFLP LSFWGVKKNI TKTFK----- ---------- ---------- BACU001335/1-1347 KGDLTLTFLP LSFWGMKKNI TKTFK----- ---------- ---------- 351 400 ENSP00000287097/1-1445 EYLDLSSPGP VEILTTVTES VTGISRNVST NVFFKQHDYI IEFFDYTTVL ENSBTAP00000053585/1-1447 EYMYLSSPGP VEIIATVTES LTGISRNASS NVFFKQHDYI IEFFDYATVL ENSTTRP00000013707/1-1440 EHMNLSSPGP VEILATVTES LTGISRNASS NVFFKQHDYI IEFFDYATVL bmy_22331T0/1-1074 ---------- ---------- ---------- ---------- ---------- BACU001335/1-1347 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000287097/1-1445 KPSLNFTATV KVTRADGNQL TLEERRNNVV ITVTQRNYTE YWSGSNSGNQ ENSBTAP00000053585/1-1447 KPSLNFTATV KVTRSDGHQL TPEERRNNVV LMVTQRNYTE YWSRWDTQNQ ENSTTRP00000013707/1-1440 KPSLNFTATV KVTRSDGNQL TPEERRNNVV VMVTQRNYTE YWNRWDGRNQ bmy_22331T0/1-1074 ---------V KVTRSDGNQL TPEERRNNVV IMVTQRNYTE YWSRWDGRNQ BACU001335/1-1347 ---------V KVTRSDGNQL TPEERRNNVV IMVTQRNYTE YWSRWGGGNQ 451 500 ENSP00000287097/1-1445 KMEAVQKINY TVPQSGTFKI EFPILEDSSE LQLKAYFLGS KSSMAVHSLF ENSBTAP00000053585/1-1447 EVGAVQIINH TVPANGIFKI EFPILDDSSE LQLQASFLDS VSNMAVHGMF ENSTTRP00000013707/1-1440 EIGAVQIVNH TVPPNGIFKI EFPILDDSSE LQLKASFLDA VSSMAVHDMF bmy_22331T0/1-1074 EIGAVQIVNH TVPPNGIFKI EFPILDDSSE LQLKASFLDT VSSMGVHDMF BACU001335/1-1347 EIGAVQIINH TVPPNGIFKI EFPILDDSSE LQLKASFLDT VSSMAVHDMF 501 550 ENSP00000287097/1-1445 KSPSKTYIQL KTRDENIKVG SPFELVVSGN KRLKELSYMV VSRGQLVAVG ENSBTAP00000053585/1-1447 KSPSKTYIQL KVKDENIKVG SPFELVVIGN KQLKELSYMV VSRGQLVAVG ENSTTRP00000013707/1-1440 KSPSKTYIQL KTRDENIKVG SPFELVLSGN KQLKEFSYMV VSRGQLVAVG bmy_22331T0/1-1074 KSPSKTYIQL KTRDENIK-- ---------- ---------V VSRGQLVAVG BACU001335/1-1347 KSPSKTYIQL KTRDENIKVG SPFELVLSGN KELKEFSYMV VSRGQLVAVG 551 600 ENSP00000287097/1-1445 KQNSTMFSLT PENSWTPKAC VIVYYIEDDG EIISDVLKIP VQLVFKNKIK ENSBTAP00000053585/1-1447 KQNSTTFSLI PENSWAPKAC IIVYYIEDDG EIINDVLKIP VQLVFKNKIQ ENSTTRP00000013707/1-1440 KQNSTTFSLT PENSWAPKAC IIVYYIEDDG EIINDVLKVP VQLVFKNKIQ bmy_22331T0/1-1074 KQNSTTFSLT PENSWAPKAC IIVYYIEDDG EIINDVLKVP VQLVFKNKIQ BACU001335/1-1347 KQNSTTFSLT PENSWAPKAC IIVYYIEDDG EIINDVLKVP VQLVFKNKIQ 601 650 ENSP00000287097/1-1445 LYWSKVKAEP SEKVSLRISV TQPDSIVGIV AVDKSVNLMN ASNDITMENV ENSBTAP00000053585/1-1447 LFWSKANAEP SEKVSLRISV TQPDSTVGIV AVDKSVNLMN VSNDITMENV ENSTTRP00000013707/1-1440 LFWSKASAEP SERVSLRITV TQPNSIVGVV AVDKSVNLMN VSNDITMENV bmy_22331T0/1-1074 LFWSKANAEP SERVSLKISV TQPDSIVGIV AVDKSVXLMN VSNDITMENV BACU001335/1-1347 LFWSKANAEP SERVSLRISV TQPDSIVGIV AVDKSVNLMN VSNDITMENV 651 700 ENSP00000287097/1-1445 -VHELELYNT GYYLGMFMNS FAVFQECGL- -WVLTDANLT KDYIDGVYDN ENSBTAP00000053585/1-1447 -VHELELYNT GYYLGMFMNS FAVFQECGL- -WVLTDANLV KDYIDGVYDS ENSTTRP00000013707/1-1440 -VHELELYNT GYYLGMFMNS FAVFQECGL- -WVLTDANLV KDFID-VYDR bmy_22331T0/1-1074 KSYEIILKGH GTII-VSIHE FPVSVTCSHL CWPILKC--- ---------- BACU001335/1-1347 -VHELELYNT GYYLGMFMNS FAVFQECGL- -WVLTDANLV KDFID-VYDR 701 750 ENSP00000287097/1-1445 AEYAERFMEE NEGHIVDIHD FSLGSSPHVR KHFPETWIWL DTNMGYR--I ENSBTAP00000053585/1-1447 VELAERFVDE NEGYLVDIHD FSLGSSPRVR KHFPETWIWL DTNMGYRLKI ENSTTRP00000013707/1-1440 IA----FLEE YEGYLVDFHD FSSGSSPRVR KHFPETWIWL DTSMGSR--T bmy_22331T0/1-1074 ---------- ---------- --------VS SRFGDFYVYL D--FSSR--T BACU001335/1-1347 IA----FLEE NEGYLVDFHD FSLGSSPRVR KHFPETWIWL DTSMGSR--T 751 800 ENSP00000287097/1-1445 YQEFEVTVPD SITSWVATGF VISEDLGLGL TTTPVELQAF QPFFIFLNLP ENSBTAP00000053585/1-1447 YQEFEVTVPD SITSWVATAF VISEDLGLGL TTAPVELQAF QPFFIFLNLP ENSTTRP00000013707/1-1440 YQEFEVTVPD SITSWVATAF VISEDLGLGL TTTPVELQSF QPFFIFLNLP bmy_22331T0/1-1074 SQEFEVTVPD SITSWVATAF VISEDLGLGL TTTPVELQSF QPFFIFLNLP BACU001335/1-1347 SQEFEVTVPD SITSWVATAF VISEDLGLGL TTTPVELQSF QPFFIFLNLP 801 850 ENSP00000287097/1-1445 YSVIRGEEFA LEITIFNYLK DATEVKVIIE KSDKFDILMT SNEINATGHQ ENSBTAP00000053585/1-1447 YSVIRGEEFA LEVTIFNYLK DATEVKVIIE KSDAFDILMA SNEINATGHQ ENSTTRP00000013707/1-1440 YSVIRGEEFA LEVTIFNYLK DATEVKVIIE KSDTFDILMA SNEINVTGHQ bmy_22331T0/1-1074 YSVIRGEEFA LEVTIFNYLK DATEVKVIIE KSDAFDILMA SNEINATGHQ BACU001335/1-1347 YSVVRGEEFA LEVTIFNYLK DVTEVKVIIE KSDAFDILMA SNEINATGHQ 851 900 ENSP00000287097/1-1445 QTLLVPSEDG ATVLFPIRPT HLGEIPITVT ALSPTASDAV TQMILVKAEG ENSBTAP00000053585/1-1447 QTILVPSEDG ATVLFPIRPT RLGEVPITVT AVSPAASDAV TQRILVKAEG ENSTTRP00000013707/1-1440 QTVLVPSEDG ATVLFPVRPT HLGEMPITVT AVSPAASDAV TQRILVKAEG bmy_22331T0/1-1074 QAVLVPSEDG ATVLFPVRPT HLGEMPITVT AVSPAASDAV TQRILVKAEG BACU001335/1-1347 QTVLVPSEDG ATVLFPVRPT HLGEMPITVT AVSPAASDAV TQRILVKAEG 901 950 ENSP00000287097/1-1445 IEKSYSQSIL LDLTDNRLQS TLKTLSFSFP PNTVTGSERV QITAIGDVLG ENSBTAP00000053585/1-1447 IEKSYSQSIL LDLTDSTLQT TLKTLSFSFP PHTVSGSERV QVTAIGDILG ENSTTRP00000013707/1-1440 IEKSYSQSIL LDLTDSKLQT TLKTLSFSFP PHIVSGSERV QITAIGDILG bmy_22331T0/1-1074 IEKSYSQSIL LDLTDSKLQT TLXTLSFSFP PHIVSGSERV QITAIGDILG BACU001335/1-1347 IEKSYSQSIL LDLTDSKLQT TLKTLSFSFP PHIVSGSERV QITAIGDILG 951 1000 ENSP00000287097/1-1445 PSINGLASLI RMPYGCGEQN MINFAPNIYI LDYLTKKKQL TDNLKEKALS ENSBTAP00000053585/1-1447 SSINGLASLI RMPYGCGEQN MINFAPNIYI LDYLTKKKQL TENLKEKALS ENSTTRP00000013707/1-1440 SSISGLASLI RMPYGCGEQN MINFAPNIYV LDYLTKKKQL TENLKEKALS bmy_22331T0/1-1074 SSISGLASLI RMPYGCGEQN MINFAPNIYV LDYLTKKKQL TENLKEKALS BACU001335/1-1347 SSISGLTSLI RMPYGCGEQN MINFAPNIYV LDYLTKKKQL TENLKEKALS 1001 1050 ENSP00000287097/1-1445 FMRQGYQREL LYQREDGSFS AFGNYDPSGS TWLSAFVLRC FLEADPYIDI ENSBTAP00000053585/1-1447 FMRQGYQREL LYQREDGSFS AFGNDDPSGS TWLSAFVLRC FLEADPYIDI ENSTTRP00000013707/1-1440 FMRQGYQREL LYQREDGSFS AFGNDDPSGS TWLSAFVLRC FLEADPYIDI bmy_22331T0/1-1074 FMRQGYQREL LYQREGGSFS AFGNDDPSGS TWLSAFVLRC FLEADPYIDI BACU001335/1-1347 FMRQGYQREL LYRREDGSFS AFGNDDPSGS TWLSAFVLRC FLEADPYIDI 1051 1100 ENSP00000287097/1-1445 DQNVLHRTYT WLKGHQKSNG EFWDPGRVIH SELQGGNKSP VTLTAYIVTS ENSBTAP00000053585/1-1447 DQNVLHRTYT WLKGHQKSNG EFWEPGRVIH SELQGGNKSP VTLTAYIVTS ENSTTRP00000013707/1-1440 DQNVLHRAYA WLKGHQKSNG EFWEPGKVIH SELQGGNKSP VTLTAYIVTS bmy_22331T0/1-1074 DQNVLHRTYT WLKGHQKSNG EFWEPGRVIH SELQGGNKSP VTLTAYIVTS BACU001335/1-1347 DQNVLHRTYT WLKGHQKSNG EFWEPGRVIH SELQGGNKSP VTLTAYIVTS 1101 1150 ENSP00000287097/1-1445 LLGYRKYQPN IDVQESIHFL ESEFSRGISD NYTLALITYA LSSVGSPKAK ENSBTAP00000053585/1-1447 LLGYKKYQPN IDVQESINFL ESEFDRGISD NYTLALVTYA LSSGRSPKAK ENSTTRP00000013707/1-1440 LLGYKKYQPN SDVQESINFL ESEFDRGISD NYTLALVTYA LSSVRSPKAK bmy_22331T0/1-1074 LLGYKKYQPN IDVQESINFL ESEFDRGISD NYTLALVTYA LSSVRSPKAK BACU001335/1-1347 LLGYKKYQPN IDVQESINFL ESEFDRGISD NYTLALVTYA LSSVRSPKAK 1151 1200 ENSP00000287097/1-1445 EALNMLTWRA EQEGGMQFWV SSESKLSDSW QPRSLDIEVA AYALLSHFLQ ENSBTAP00000053585/1-1447 EALDMLTWRA EQEGGLQFWV SLVSRLSESW QPSSLDIEVA AYALLSHFLQ ENSTTRP00000013707/1-1440 DALNMLTWRA EQEGDMQFWV SPVSRLSESW QPSSLDIEVA AYALLSHFLQ bmy_22331T0/1-1074 DALNMLTWRA EQEGGMQFWV SSVSRLSESW QPSSLDIEVA AYALLSHLLQ BACU001335/1-1347 DALNMLTWRA EREGGMQFWV SSVSRLSESW QPSSLDIEVA AYALLSHFLQ 1201 1250 ENSP00000287097/1-1445 FQTSEGIPIM RWLSRQRNSL GGFASTQDTT VALKALSEFA ALMNTERTNI ENSBTAP00000053585/1-1447 HRVPEGIPIM RWLSRQRNSL GGFASTQDTI VALKALSEFA ALMNVEETNI ENSTTRP00000013707/1-1440 HQISEGIPIM RWLSRQRNSL GGFASTQDTI VALKALSEFA ALMNTEETNI bmy_22331T0/1-1074 HQISEGIPIM RWLSRQRNSL GGFASTQDTI VALKALSEFA ALMNTEETNI BACU001335/1-1347 HQISEGITIM RWLSRQRNSL GGFASTQDTI VALKALSEFA ALMNIEETNI 1251 1300 ENSP00000287097/1-1445 QVTVTGPSSP SPVKFLIDTH NRLLLQTAEL AVVQPTAVNI SANGFGFAIC ENSBTAP00000053585/1-1447 QVTVEGSGSL SPVKFVIDTQ NRFLLQTAEL AVVQPTTVNI SANGFGYAIC ENSTTRP00000013707/1-1440 QVTVVGSGSL SPVKFVISTQ NRFLLQTAEX XXXXXXXXXX XXXXXXXXXX bmy_22331T0/1-1074 QVTVVGSGSL SPVKFVISTQ NRFLLQTAEL AVVQPTAVNI SASGFGFAIC BACU001335/1-1347 QVTVVGSGSL SPVKFVISTQ NRFLLQTAEL AVVQPTAVNI SASGFGFAIC 1301 1350 ENSP00000287097/1-1445 QLNVVYNVKA SGSSRRRRSI QNQEAFDLDV AVKENKDDLN HVDLNVCTSF ENSBTAP00000053585/1-1447 QLNVIYNVKN SRSSKSRRSI QDQESFDLDV AVKDNKDDVN HLDLNVCTRF ENSTTRP00000013707/1-1440 XLNVIYNVKE SRSSIIHRSI QDQEAFDLDI AVKDDKDDIN HLNLNVCTRF bmy_22331T0/1-1074 QLNVIYNVKD SRSSIIQRSI QDQEAFDLDI AVKDDKDDIN HLNLNVCTRF BACU001335/1-1347 QLNVIYNVKD SRSSIIQRSI QDQEAFDLDV AVKDDKDDIN HLNLNVCTRF 1351 1400 ENSP00000287097/1-1445 SGPGRSGMAL MEVNLLSGFM VPSEAISLSE TVKKVEYDHG KLNLYLDSVN ENSBTAP00000053585/1-1447 LGPARSGMAL MEVNLLSGFT VSSDAIPLSD TLKKVEHDHG KLNLYLDSVN ENSTTRP00000013707/1-1440 LGPGRSGMAL MEINLLSGFT VSSDAISLSE TVKKVEHDHG KLNLYLDSVN bmy_22331T0/1-1074 LGPARSGMAL MEINLLSGFT VSSDAISLSE TVKKVEHDHG KLHLYLDSVN BACU001335/1-1347 LGPARSGMAL MEINLLSGFT VSSDAISLSE TVKKVEHDHG KLHLYLDSVN 1401 1450 ENSP00000287097/1-1445 ETQFCVNIPA VRNFKVSNTQ DASVSIVDYY EPRRQAVRSY NSEVKLSSCD ENSBTAP00000053585/1-1447 ETQFCVDIPA VRSFRVSNTQ DASVSIVDYY EPRRRAVRSY NSRAQLTSCD ENSTTRP00000013707/1-1440 ETQFCVDIPS VRNFRVSNTQ DASVSIMDYY EPRRQAVRSY NSRAQLSSCD bmy_22331T0/1-1074 ETQFCVDIPS VRNFRVSNTQ DASVSIMDYY EPRRQAVRSY NSRAQLSSCD BACU001335/1-1347 ETQFCVDIPS VRNFRVSNTQ DASVSIMDYY EPRRQSVRSY NSRAQLSSCD 1451 1500 ENSP00000287097/1-1445 LCSDVQGCRP CEDGASGSHH HSSVIFIF-C FKLLYFMELW L ENSBTAP00000053585/1-1447 LCGDALACGP CDLAAAAHLP RLTAGLLLLC LALLF-LQRW P ENSTTRP00000013707/1-1440 LCGDAHACGP CDSVASASLS HPNACLLV-C FMLLFSLQCW L bmy_22331T0/1-1074 LCGDAHTCGP CDSAVSASLP HPNTCLLV-C FTLLFSLPCW L BACU001335/1-1347 LCGDAHTCGP CDSAASASLP HPNACLLV-C FTLLFSLPCW L