KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:33 2014 Check: 00 .. Name: ENSTTRP00000003896/1-675 Len: 722 Check: 9341 Weight: 1.00 Name: ENSP00000352264/1-639 Len: 722 Check: 640 Weight: 1.00 Name: ENSBTAP00000053206/1-637 Len: 722 Check: 651 Weight: 1.00 Name: bmy_00005T0/1-534 Len: 722 Check: 9226 Weight: 1.00 Name: BACU015838/1-675 Len: 722 Check: 6270 Weight: 1.00 // 1 50 ENSTTRP00000003896/1-675 AAGLEPSGGP ASCRXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000352264/1-639 --MVD----- ---------- ---------- ---------- ---YIVEYDY ENSBTAP00000053206/1-637 --MVD----- ---------- ---------- ---------- ---YIVEYDY bmy_00005T0/1-534 MNGVD----- ---------- ---------- ---------- ---YIVEYDY BACU015838/1-675 MNGVD----- ---------- ---------- ---------- ---YIVEYDY 51 100 ENSTTRP00000003896/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXEIKRE ENSP00000352264/1-639 DAVHDDELTI RVGEIIRNVK KLQEEGWLEG ELNGRRGMFP DNFVKEIKRE ENSBTAP00000053206/1-637 DAVHDDELTI RVGEVIRNVR KLQEEGWLEG ELNGRRGMFP DNFVKEIKKE bmy_00005T0/1-534 DAVHDDELTI RVGEIIRNVR KLQEEGWLEG ELNGRRGMFP DNFVKEIKRE BACU015838/1-675 DAVHDDELTI RVGEIIRNVR KLQEEGWLEG ELNGRRGMFP DNFVKEIKRE 101 150 ENSTTRP00000003896/1-675 TESKDDNLPI KRERQGNVAS LVQRISTYGL LAGGIQPHPQ TKNIKKKTKK ENSP00000352264/1-639 TEFKDDSLPI KRERHGNVAS LVQRISTYGL PAGGIQPHPQ TKNIKKKTKK ENSBTAP00000053206/1-637 TESKDDSLPI RRERHGNVAN LVQRISTYGL LPGGIQPLPQ TKTIKKKTKK bmy_00005T0/1-534 TESKDDNLPI KRERQGNVAS LVQRISTYGL LAGGIQPHPQ TKNIKKKTKK BACU015838/1-675 TESKDDNLPI KRERQGNVAS LVQRISTYGL LAGGIQPHPQ TKNIKKKTKK 151 200 ENSTTRP00000003896/1-675 RQCKVLFEYI PQNEDELELK VGDTIDISEE VEEGWWSGTL NNKLGLFPSN ENSP00000352264/1-639 RQCKVLFEYI PQNEDELELK VGDIIDINEE VEEGWWSGTL NNKLGLFPSN ENSBTAP00000053206/1-637 RQCKVLFEYI PQNEDELELK VGDIIDISEE VEEGWWSGTL NNKLGLFPSN bmy_00005T0/1-534 RQCKVLFEYI PQNEDELELK VGDTIDISEE ---------- ---------- BACU015838/1-675 RQCKVLFEYI PQNEDELELK VGDTIDISEE VEEGWWSGTL NNKLGLFPSN 201 250 ENSTTRP00000003896/1-675 FVKELEVTDD GEAHEAQDDS ETVLTGSTSP LP-SPGNGNE TAPGSVTQPK ENSP00000352264/1-639 FVKELEVTDD GETHEAQDDS ETVLAGPTSP IP-SLGNVSE TASGSVTQPK ENSBTAP00000053206/1-637 FVKELEVTDD -DTHEAQEDS ETALTGPTSP LPFSLGNGTE TAPGSVTQPK bmy_00005T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU015838/1-675 FVKELEVTDD GETHEAQDDS ETVLTGSTSP LP-SPGNGNE TAPGSVTQPK 251 300 ENSTTRP00000003896/1-675 KIRGVGFGDI FKEGSVKLRT RTSSSETEEK KPEKPLITQS LGSKTQSVEV ENSP00000352264/1-639 KIRGIGFGDI FKEGSVKLRT RTSSSETEEK KPEKPLILQS LGPKTQSVEI ENSBTAP00000053206/1-637 KIRGIGFGDI FKEGSVKLRT RTSSSETEEK KPEKPLITPS LGSKTQSVEI bmy_00005T0/1-534 ---------- ---------- ---------- ----PLITQS LGSKTQSVEI BACU015838/1-675 KIRGVGFGDI FKEGSVKLRT RTSSSETEEK KPEKPLITQS LGSKTQSVEI 301 350 ENSTTRP00000003896/1-675 TKTDTESKIK AKEYCRTLFA YAGTNEDELT FKEGEIIQLI SKETGEAGWW ENSP00000352264/1-639 TKTDTEGKIK AKEYCRTLFA YEGTNEDELT FKEGEIIHLI SKETGEAGWW ENSBTAP00000053206/1-637 TKTDTEGKLK AKEYCRTLFA YEGTNEDELT FKEGEIIQLI SKETGETGWW bmy_00005T0/1-534 TKTDTESKIK AKEYCRTLFA YEGTNEDELT FKEGEIIQLI SKETGDAGWW BACU015838/1-675 TKTDTESKIK PKEYCRTLFA YEGTNEDELT FKEGEIIQLI SKETGEAGWW 351 400 ENSTTRP00000003896/1-675 KGELNGKEGV FPDNFAVQIN ELDKDFPKPK KPPPPAKGPA PKPELTGAEK ENSP00000352264/1-639 RGELNGKEGV FPDNFAVQIN ELDKDFPKPK KPPPPAKAPA PKPELIAAEK ENSBTAP00000053206/1-637 KGELNGKEGV FPDNFAVQIN ELDKDFPKPK KPPPPAKGPI SKPELVGTEK bmy_00005T0/1-534 KGELNGKEGV FPDNFAVQIN ELDKDFPKPK KPPPPAKGPA PKPELTGAEK BACU015838/1-675 KGELNGKEGV FPDNFAVQIN ELDKDFPKPK KPPPPAKGPA PKPELTGAEK 401 450 ENSTTRP00000003896/1-675 KYFPTKPEEK ---DEKSVLE QKPSKPAAPQ VPPKKPTPPA KANNLLRSPG ENSP00000352264/1-639 KYFSLKPEEK ---DEKSTLE QKPSKPAAPQ VPPKKPTPPT KASNLLRSSG ENSBTAP00000053206/1-637 KYFPTKHEEK EKSDEKSVLE QKPSKPAAPL VPPKKPVPPT KANNILRS-G bmy_00005T0/1-534 KYFPTKPEEK ---DEKSVPE QKPCKPAAPQ VPPKKPAPPA KANNLLRSPG BACU015838/1-675 KYFPTKSEEK ---DEKSVPE QKPCKPAAPQ VPPKKPAPPA KANNLLRSPG 451 500 ENSTTRP00000003896/1-675 TVYPKRPEKP VPPPPPVAKI NGDVSTILSK FETEPVSKPK LDSEQLPLRP ENSP00000352264/1-639 TVYPKRPEKP VPPPPPIAKI NGEVSSISSK FETEPVSKLK LDSEQLPLRP ENSBTAP00000053206/1-637 AVYPKRPEKP VPPPPPVAKI NGDVSTSSSK FEAEPVSKPK LDSEQLPLRP bmy_00005T0/1-534 TVYPKRPEKP VPPPPPAAKI NGDVSTILSK FETEPVSKPK LDSEQLPLRP BACU015838/1-675 TVYPKRPEKP VPPPPPAAKI NGDVSTILSK FETEPVSKPK LDSEQLPLRP 501 550 ENSTTRP00000003896/1-675 KSVDLDTFTV RSSKETDLVN FDDIASSENL LHLTANRPKM PGRRLPGRFN ENSP00000352264/1-639 KSVDFDSLTV RTSKETDVVN FDDIASSENL LHLTANRPKM PGRRLPGRFN ENSBTAP00000053206/1-637 KSVDLDSFTV RSSKETDLVN FDDIASSENL LHLTANRPKM PGRRLPGRFN bmy_00005T0/1-534 KSVDLDTFTV RSSKETDLVN FDDIASSENL LHLTANRPKM PGRRLPGRFN BACU015838/1-675 KSVDLDTFTV RSPKETDLVN FDDIASSENL LHLTANRPKM PGRRLPGRFN 551 600 ENSTTRP00000003896/1-675 GGHSPTQSPE KILKLPKEDD SANLKPSEFK KDSCYSPKPS VYLSTPSSAS ENSP00000352264/1-639 GGHSPTHSPE KILKLPKEED SANLKPSELK KDTCYSPKPS VYLSTPSSAS ENSBTAP00000053206/1-637 GAHSPTQSPE KTLKLPKEDD SANLKPFEHK KDSCYSPKPP VHLPTPSSTS bmy_00005T0/1-534 GGHSPTQSPE KILKLPKEDD SANLKPSEFK KDSCYSPKPS VYLSTPSSAS BACU015838/1-675 GGHSPTQSPE KILKLPKEDD SAKLKPSEFK KDSCYSPKPS VYLSTPSSAS 601 650 ENSTTRP00000003896/1-675 KPNTAAFLTP LEIKAKLETE ----NSLDEL KTQIVELLCV VEALKKDHGK ENSP00000352264/1-639 KANTTAFLTP LEIKAKVETD DVKKNSLDEL RAQIIELLCI VEALKKDHGK ENSBTAP00000053206/1-637 KPNTASFLTP LEIKAKVEAE ----NSLDEL KAQIVELLCV VEALKKDHGK bmy_00005T0/1-534 KPNTAAFLTP LEIKAKLETE ----NSLDEL KAQIVELLCV VEALKKDHGK BACU015838/1-675 KPNTAAFLTP LEIKAKLETE ----NSLDEL KAQIVELLCV VEALRKDHGR 651 700 ENSTTRP00000003896/1-675 ELEKLRKDLE EEKAMRSN-- ---------- -----LEVEI EKLKKAIMSS ENSP00000352264/1-639 ELEKLRKDLE EEKTMRSN-- ---------- -----LEMEI EKLKKAVLSS ENSBTAP00000053206/1-637 ELDKLRKDLE EEKEMRSN-- ---------- -----LEVEI EKLKKAFLSS bmy_00005T0/1-534 ELEKLRKDLE EEKAMRSN-- ---------- -----LEVEV EKLKKAIMSS BACU015838/1-675 R-KKVTRDRF EFEAMHHQGW LKYLWLLNAF KTKHLLRIVV ENKHSTCFPG 701 750 ENSTTRP00000003896/1-675 ---------- ---------- -- ENSP00000352264/1-639 ---------- ---------- -- ENSBTAP00000053206/1-637 ---------- ---------- -- bmy_00005T0/1-534 ---------- ---------- -- BACU015838/1-675 GGGTDNLQIN EYVDNYKLEK MN