KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:19 2014 Check: 00 .. Name: ENSTTRP00000002900/1-805 Len: 1004 Check: 6904 Weight: 1.00 Name: BACU014636/1-736 Len: 1004 Check: 212 Weight: 1.00 Name: bmy_18094T0/1-582 Len: 1004 Check: 3139 Weight: 1.00 Name: ENSP00000414351/1-813 Len: 1004 Check: 614 Weight: 1.00 Name: ENSBTAP00000053180/1-806 Len: 1004 Check: 8597 Weight: 1.00 // 1 50 ENSTTRP00000002900/1-805 MSEPGDLSQT IVEEGGPEQE TATPENGVVK SESLDEEEKL ELQRQLAAQN BACU014636/1-736 MSEPGDLNQT IVEEGGPEQE TATPENGVVK SESLDEEEKL ELQRQLAAQN bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 MSEQGDLNQA IAEEGGTEQE TATPENGIVK SESLDEEEKL ELQRRLEAQN ENSBTAP00000053180/1-806 MSEPGDLSQT IVEEGGPEQE TATPENGVIK SESLDEEEKL ELQRRLVAQN 51 100 ENSTTRP00000002900/1-805 QERRKSKSRA -KGKLTRSLA VCEISVR--- GGSL-DQESI HLQLSSFPSL BACU014636/1-736 QERRKSKSGA GKGKLTRSLA VCEESSARPG GESLQDQESI HLQLSSFPSL bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 QERRKSKSGA GKGKLTRSLA VCEESSARPG GESLQDQESI HLQLSSFSSL ENSBTAP00000053180/1-806 QERRKSKSGA GKGKLTRSLA VCEESSARPG GESLQDQESI HLQLSSFPSL 101 150 ENSTTRP00000002900/1-805 QEDDKSRKDD SEREKEKDKN KDKTCEKPKI RMLSKDCSQE YTDSTGIDLH BACU014636/1-736 QEDDKSRKDD SEREKEKDKN KDKTCEKPKI RMLSKDCSQE YTDSTGIDLH bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 QEEDKSRKDD SEREKEKDKN KDKTSEKPKI RMLSKDCSQE YTDSTGIDLH ENSBTAP00000053180/1-806 QEEDKSRKDD SEREKEKDKN KDKTSEKPKI RMLSKDCSQE YTDSTGIDLH 151 200 ENSTTRP00000002900/1-805 EFLINTLKNN SRDRMILLKM EQEIIDFIGD NNNHYKKFPQ MSSYQRMLVH BACU014636/1-736 EFLINTLKNN SRDRMILLKM EQEIIDFIGD NNNHYKKFPQ MSSYQRMLVH bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 EFLINTLKNN SRDRMILLKM EQEIIDFIAD NNNHYKKFPQ MSSYQRMLVH ENSBTAP00000053180/1-806 EFLINTLKNN SRDRMILLKM EQEIIDFIGD NNNHYKKFPQ MSSYQRMLVH 201 250 ENSTTRP00000002900/1-805 RVAAYFGLDH NVDQTGKSVI INKTSNTRI- ---------- ---------- BACU014636/1-736 RVAAYFGLDH NVDQTGKSVI INKTSNTRIE KMYAQGVSFG DEKPSTFTSI bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 RVAAYFGLDH NVDQTGKSVI INKTSSTRI- ---------- ---------- ENSBTAP00000053180/1-806 RVAAYFGLDH NVDQTGKSVI INKTSNTRI- ---------- ---------- 251 300 ENSTTRP00000002900/1-805 ---------- ---------- ---------- ---------- ---------- BACU014636/1-736 FQRAKISHRQ RKSHMYLNVF AYVRKIKTEI HGSCHSAMTE VYMVSMVNSM bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053180/1-806 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000002900/1-805 ---------- --PEQRFCEH LKDEKGEESQ KRFILKRDNS SIDKEDTQQN BACU014636/1-736 QQTRLRIPNN QRPEQRFCEH LKDEKGEESQ KRFILKRDNS SIDKEDTQQN bmy_18094T0/1-582 ---------- --PEQRFCEH LKDEKGEESQ KRFILKRDNS SIDKEDTQQN ENSP00000414351/1-813 ---------- --PEQRFCEH LKDEKGEESQ KRFILKRDNS SIDKEDNQ-- ENSBTAP00000053180/1-806 ---------- --PEQRFCEH LKDEKGEESQ KRFILKRDNS SIDKEDTQQN 351 400 ENSTTRP00000002900/1-805 RMHPFRDDRR SKSIEEREEE YQRVRERIFA HDSVCSQESL FVENSRLLED BACU014636/1-736 RMHPFRDDRR SKSIEEREEE YQRVRERIFA HDSVCSQESL FVEN------ bmy_18094T0/1-582 RMHPFRDDRR SKSIEEREEE YQRVRERIFA HDSVCSQESL FVENSRLLED ENSP00000414351/1-813 ---------- ---------- ---------- --SVCSQESL FVENSRLLED ENSBTAP00000053180/1-806 RMHPFRDDRR SKSIEEREEE YQRVRERIFA HDSVCSQESL FVENSRLLED 401 450 ENSTTRP00000002900/1-805 SNICSETYKK RQLFRGNRDS SGRTSGSRQS SSENELKWSD HQRAWSSTDS BACU014636/1-736 ---------- ----RGNRDS WGRTSGSRQS SSENELKWSD HQRAWSSTDS bmy_18094T0/1-582 SNICSETYKK RQLFRGNRDS WGRTSGSRQS SSENELKWSD HQRAWSSTDS ENSP00000414351/1-813 SNICNETYKK RQLFRGNRDG SGRTSGSRQS SSENELKWSD HQRAWSSTDS ENSBTAP00000053180/1-806 SNICSETYKK RQLFRGNRDG SGRTSGSRQS SSENELKWSD HQRAWSSTDS 451 500 ENSTTRP00000002900/1-805 DSSNRNLKPA MTKTASFGGI TVLTRGDSTS SSRSTGKLSK AGSESSSSAG BACU014636/1-736 DSSNRNLKPA MTKTASFGGI TVLTRGDSTS SSRSTGKLSK A--------- bmy_18094T0/1-582 DSSNRNLKPA MTKTASFGGI TVLTRGDSTS SSRSTGKLSK AGSESSSSAG ENSP00000414351/1-813 DSSNRNLKPA MTKTASFGGI TVLTRGDSTS STRSTGKLSK AGSESSSSAG ENSBTAP00000053180/1-806 DSSNRNLKPA MTKTASFGGI TVLSRAESTS SSRSTGKLSK AGSESSSSAG 501 550 ENSTTRP00000002900/1-805 SSGSLSRTHP PLQSSPLVSG VAATSPGCVT YPENGMGGQV AHSSTSYILL BACU014636/1-736 ---------- ---------- ---------- ---------- ---------- bmy_18094T0/1-582 SSGSLSRTHP PLQSTPLVSG VAATSPGCVT YPENGMGGQV AHSSTSYILL ENSP00000414351/1-813 SSGSLSRTHP PLQSTPLVSG VAAGSPGCVP YPENGIGGQV APSSTSYILL ENSBTAP00000053180/1-806 SSGSLSRTYP PLQSTPLVSG MAATSPGCVT YPENGMGGQV APSSTSYILL 551 600 ENSTTRP00000002900/1-805 PLEAATGIPP GSILLNPHTG QPXXXXXGTP AIYT-PTSQQ PLRSAMVGQP BACU014636/1-736 ---------- ---------G QPFVTPDGPP AIYNPPTSQQ PLRSAVVGQP bmy_18094T0/1-582 PLEAATGIPP GSILLNPHTG QPFVNPDGTP AIYNPPTSQQ PLRSAMVGQP ENSP00000414351/1-813 PLEAATGIPP GSILLNPHTG QPFVNPDGTP AIYNPPTSQQ PLRSAMVGQS ENSBTAP00000053180/1-806 PLEAATGIPP GSILLNPHTG QPFVNPDGTP AIYNPPASQQ PLRSAMVGQA 601 650 ENSTTRP00000002900/1-805 -QQQPQQQPS PRPQQQAQPP QTQMAGPLVT ---------- ---------- BACU014636/1-736 -QQPPQQQPS PRPQQQAQPP QTQMAGPLVT ---------- ---------- bmy_18094T0/1-582 -QQQPQQQPS PRPQQQAQPP QTQMAGPLVT QSVQGLQASS QSVQYPAVSF ENSP00000414351/1-813 QQQPPQQQPS PQPQQQVQPP QPQMAGPLVT QSVQGLQASS QSVQYPAVSF ENSBTAP00000053180/1-806 -QPQPQQQPS PQPQQQVQPA QPQMASPLVT ---------- ---------- 651 700 ENSTTRP00000002900/1-805 ---------- ---------- ---------- ---------- ---------- BACU014636/1-736 ---------- ---------- ---------- ---------- ---------- bmy_18094T0/1-582 PSQHLLPVSP TPQFPMVLYH VGMTFHLGEH IHWFYYFLVQ GRLTLENSFR ENSP00000414351/1-813 PPQHLLPVSP TQHFP----- ---------- ---------- ---------- ENSBTAP00000053180/1-806 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000002900/1-805 ---------- ---------- ---------- ---------Q XXXXXXXXXX BACU014636/1-736 ---------- ---------- ---------- ---------Q REDVTTQFGQ bmy_18094T0/1-582 LFFPNCSPSV SHKDKPVSCV CHSHSSATLA DALVSLHGLQ REDVTTQFGQ ENSP00000414351/1-813 ---------- ---------- ---------- ---------M RDDVATQFGQ ENSBTAP00000053180/1-806 ---------- ---------- ---------- ---------Q REDVATQFGQ 751 800 ENSTTRP00000002900/1-805 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU014636/1-736 MNLSRQSSGE TPEPQAGPVY TPSLLPQPTQ QPSYVIASTG QQLPTGGFSG bmy_18094T0/1-582 MNLSRQSSGE TPEPPAGPVY TPSLLPQPTQ QPSYVIASTG QQLPTGGFSG ENSP00000414351/1-813 MTLSRQSSGE TPEPPSGPVY PSSLMPQPAQ QPSYVIASTG QQLPTGGFSG ENSBTAP00000053180/1-806 MTLSRQSSGE TPEPPAGPVY PPSLLPQPTQ QPSYVIASTG QQLPTGSFSG 801 850 ENSTTRP00000002900/1-805 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU014636/1-736 SGPPLSQQVL QPPPSPQGFV QQPPPTQMPV YYYPSGQYPT STTQQYRPMA bmy_18094T0/1-582 SGPPLSQQVL QPPPSPQGFV QQPPPTQMPV YYYPSGQYPT STTQQYRPMA ENSP00000414351/1-813 SGPPISQQVL QPPPSPQGFV QQPPPAQMPV YYYPSGQYPT STTQQYRPMA ENSBTAP00000053180/1-806 -----SQQVL QPPASPQGFV HQPPPTQMPV YYYPSGQYPT STTQQYRPMA 851 900 ENSTTRP00000002900/1-805 XXXXXXXXXX XXXXXXXXXX YQPLLSGQQG FQGLVGVQQP PQSQGMMSSH BACU014636/1-736 SVQFSAPRGQ QMPQTAQQAD ---------- ---------- PCAPSVVATT bmy_18094T0/1-582 SVQFSAPRGQ QMPQTAQQAG ---------- ---------- T--------- ENSP00000414351/1-813 PVQYNAQRSQ QMPQAAQQAG YQPVLSGQQG FQGLIGVQQP PQSQNVINNQ ENSBTAP00000053180/1-806 SVQFSAQRGQ QIPPTAQPAG YQPVLSGQQG FQGLMGVQQP PQSQGVMSSQ 901 950 ENSTTRP00000002900/1-805 QGTPVQSVML SYPTVSNYQV PMTQGSQGLP QQSYQQPIML PNQAGQGSLP BACU014636/1-736 ADIRPKIPLW FPPLLNLLSV WEGSSCPQMS LRITSANKIQ GTQLGDGSVT bmy_18094T0/1-582 ---------W -----NLFPI F---SSNPVI LHINLLAVLF G--------- ENSP00000414351/1-813 QGTPVQSVMV SYPTMSSYQV PMTQGSQGLP QQSYQQPIML PNQAGQGSLP ENSBTAP00000053180/1-806 QGTPVQSVMV SYPTVSNYQV PMTQGSQGLP QQSYQQPLML PTQAGQGSLP 951 1000 ENSTTRP00000002900/1-805 ATGMPVYCNV TPPTPQNNLR LMGPHCPSST VPVMSASCRT NCASMSNAGW BACU014636/1-736 VEG------- ---------- ---------- ---------- ---GSGSYSW bmy_18094T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000414351/1-813 ATGMPVYCNV TPPTPQNNLR LIGPHCPSST VPVMSASCRT NCASMSNAGW ENSBTAP00000053180/1-806 AAGMPVYCNV TPPTPQNNLR LVGPPCPSST VPVVSASCRT NCASMSNAGW 1001 1050 ENSTTRP00000002900/1-805 QVKF BACU014636/1-736 EAFR bmy_18094T0/1-582 ---- ENSP00000414351/1-813 QVKF ENSBTAP00000053180/1-806 QVKF