KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:57 2014 Check: 00 .. Name: ENSP00000441235/1-764 Len: 764 Check: 303 Weight: 1.00 Name: bmy_14144T0/1-551 Len: 764 Check: 870 Weight: 1.00 Name: ENSBTAP00000052860/1-763 Len: 764 Check: 244 Weight: 1.00 Name: BACU013135/1-637 Len: 764 Check: 4891 Weight: 1.00 Name: ENSTTRP00000000721/1-764 Len: 764 Check: 1153 Weight: 1.00 // 1 50 ENSP00000441235/1-764 MRPADLLQLV LLLDLPRDLG GMGCSSPPCE CHQEEDFRVT CKDIQRIPSL bmy_14144T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052860/1-763 MRPTPLLRLA LFLVLPSSLG GERCPSPPCE CRQEDDFRVT CKDIQSIPSL BACU013135/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000721/1-764 MKPTPLLQLA LLLVLPRSLR GKGCPSPPCK CHQEDDFRVT CKDIHRIPNL 51 100 ENSP00000441235/1-764 PPSTQTLKLI ETHLRTIPSH AFSNLPNISR IYVSIDVTLQ QLESHSFYNL bmy_14144T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052860/1-763 PPSTQTLKFI ETHLKTIPSR AFSNLPNISR IYLSIDATLQ QLESHSFYNL BACU013135/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000721/1-764 PPSTQTLKFI ETHLKTIPSH AFSNLPNISR IYLSIDATLQ RLESHSFYNL 101 150 ENSP00000441235/1-764 SKVTHIEIRN TRNLTYIDPD ALKELPLLKF LGIFNTGLKM FPDLTKVYST bmy_14144T0/1-551 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052860/1-763 SKVTHIEIRN TRSLTYIDSG ALKELPLLKF LGIFNTGLRV FPDLTKIYST BACU013135/1-637 ---------- ---------- -------MYF SGIFNTGLRV FPDLTKVYST ENSTTRP00000000721/1-764 SKMTHIEIRN TRSLTYIDRG ALKELPLLKF LGIFNTGLRV FPDLTKVYST 151 200 ENSP00000441235/1-764 DIFFILEITD NPYMTSIPVN AFQGLCNETL TLKLYNNGFT SVQGYAFNGT bmy_14144T0/1-551 ---------M NTHNQCIQQT AKQK------ ---------- -------KGA ENSBTAP00000052860/1-763 DVFFILEITD NPYMTSIPAN AFQGLCNETL TLKLYNNGFT SIQGHAFNGT BACU013135/1-637 DVFFILEITD NPYMTSIPAN AFQGLCNETL TLKLYNNGFT SIQGHAFNGT ENSTTRP00000000721/1-764 DVFFILEITD NPYMTSIPAN AFQGLCNETL TLKLYNNGFT SVQGHAFNGT 201 250 ENSP00000441235/1-764 KLDAVYLNKN KYLTVIDKDA FGGVYSGPSL LDVSQTSVTA LPSKGLEHLK bmy_14144T0/1-551 KRRSLVSLTE KRHAVIQRK- ---------- -DVSHTSVTA LPSKGLEHLK ENSBTAP00000052860/1-763 KLDAVYLNKN KYLTVIGQDA FAGVYSGPTL LDISYTSVTA LPSKGLEHLK BACU013135/1-637 KLDAVYLNKN KYLTAIDKDT FGGVYSGPTL LDVSHTSVTA LPSEGLEHLK ENSTTRP00000000721/1-764 KLDAVYLNKN KYLTVIDKDT FGGVYSGPTL LDVSHTSVTA LPSKGLEHLK 251 300 ENSP00000441235/1-764 ELIARNTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGILESLM bmy_14144T0/1-551 ELIARNTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGICGLTS ENSBTAP00000052860/1-763 ELIARNTWTL RKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGILQSLM BACU013135/1-637 ELIARNTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGILESLM ENSTTRP00000000721/1-764 ELIARNTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGILESLM 301 350 ENSP00000441235/1-764 CNESSMQSLR QRKSVNALNS PLHQEYEENL GDSIVGYKEK SKFQDTHNNA bmy_14144T0/1-551 CTQTS----- ---------- ----KYEEDL GDGSAAYKEN SKFQDTHSNS ENSBTAP00000052860/1-763 CNESSIRGLR QRKSASALNG PFYQEY-EDL GDGSAGYKEN SKFQDTHSNS BACU013135/1-637 CNESSIRSLR QRKSVKALNG PFDQEYEEDL GDGSAGYKEN SKFQDTHSNS ENSTTRP00000000721/1-764 CNESSIRSLR QRKSVKAVNG PFEQKYEEDL GDGSAGYKEN SKFQDTHSNS 351 400 ENSP00000441235/1-764 HYYVFFEEQE DEIIGFGQEL KNPQEETLQA FDSHYDYTIC GDSEDMVCTP bmy_14144T0/1-551 HYYVFLEEQE DEIIGFGQEL KNPQEETLQA FDSHYDYTVC GGSEDMVCTP ENSBTAP00000052860/1-763 HYYVFFEEQE DEIIGFGQQL KNPQEETLQA FDSHYDYTVC GGSEDMVCTP BACU013135/1-637 HYYVFLEEQE DEIIGFGQEL KNPQEETLQA FDSHYDYTVC GGSEDMVCTP ENSTTRP00000000721/1-764 HYYVFLEEQE DEIIGFGQEL KNPQEETLQA FDSHYDYTVC GGSEDMVCTP 401 450 ENSP00000441235/1-764 KSDEFNPCED IMGYKFLRIV VWFVSLLALL GNVFVLLILL TSHYKLNVPR bmy_14144T0/1-551 RSDEFNPCED IMGYKFLRIV VWFVSLLALL GNVFVLVILL TSHYKLTVPR ENSBTAP00000052860/1-763 KSDEFNPCED IMGYKFLRIV VWFVSLLALL GNVFVLVILL TSHYKLTVPR BACU013135/1-637 RSDEFNPCED IMGYKFLRIV VWFVSLLALL GNVFVLVILL TSHYKLTVPR ENSTTRP00000000721/1-764 RSDEFNPCED IMGYKFLRIV VWFVSLLALL GNVFVLVILL TSHYKLTVPR 451 500 ENSP00000441235/1-764 FLMCNLAFAD FCMGMYLLLI ASVDLYTHSE YYNHAIDWQT GPGCNTAGFF bmy_14144T0/1-551 FLMCNLAFAD FCMGMYLLLI ASVDLYTQSE YYNHAIDWQT GPGCNTAGFF ENSBTAP00000052860/1-763 FLMCNLAFAD FCMGLYLLLI ASVDLYTQSE YYNHAIDWQT GPGCNTAGFF BACU013135/1-637 FLMCNLAFAD FCMGMYLLLI ASVDLYTQSE YYNHAIDWQT GPGCNTAGFF ENSTTRP00000000721/1-764 FLMCNLAFAD FCMGMYLLLI ASVDLYTQSE YYNHAIDWQT GPGCNTAGFF 501 550 ENSP00000441235/1-764 TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHACA IMVGGWVCCF bmy_14144T0/1-551 TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHAYA IMVGGWVCCF ENSBTAP00000052860/1-763 TVFASELSVY TLTVITLERW HAITFAMRLD RKIRLWHAYV IMLGGWVCCF BACU013135/1-637 TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHAYA IMVGGWVCCF ENSTTRP00000000721/1-764 TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHAYA IMVGGWVCCF 551 600 ENSP00000441235/1-764 LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIVFVLTLN IVAFVIVCCC bmy_14144T0/1-551 LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIFLVLLLN IVAFIIVCSC ENSBTAP00000052860/1-763 LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIILVLLLN IIAFIIVCAC BACU013135/1-637 LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIILVLLLN IVAFIIVCSC ENSTTRP00000000721/1-764 LLALLPLVGI SSYAKVSICL PMDTETPLAL AYIILVLLLN IVAFIIVCSC 601 650 ENSP00000441235/1-764 YVKIYITVRN PQYNPGDKDT KIAKRMAVLI FTDFICMAPI SFYALSAILN bmy_14144T0/1-551 YVKIYITVRN PQYNPGDKDT KIAKRMAVLI FTDFMCMAPI SFYALSALMN ENSBTAP00000052860/1-763 YVKIYITVRN PHYNPGDKDT RIAKRMAVLI FTDFMCMAPI SFYALSALMN BACU013135/1-637 YVKIYITVRN PQYNPGDKDT KIAKRMAVLI FTDFMCMAPI SFYALSALMN ENSTTRP00000000721/1-764 YVKIYITVRN PQYNPGDKDT KIAKRMAVLI FTDFMCMAPI SFYALSALMN 651 700 ENSP00000441235/1-764 KPLITVSNSK ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK bmy_14144T0/1-551 KPLITVTNSK ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK ENSBTAP00000052860/1-763 KPLITVTNSK ILLVLFYPLN SCANPFLYAI FTKAFQRDVF MLLSKFGICK BACU013135/1-637 KPLITVTNSK ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK ENSTTRP00000000721/1-764 KPLITVTNSK ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK 701 750 ENSP00000441235/1-764 RQAQAYRGQR VPPKNSTDIQ VQKVTHEMRQ GLHNMEDVYE LIENSHLTPK bmy_14144T0/1-551 RQAQAYRGQR ISAKNSTGIQ VQKVTQDMRQ SLPNMQDNYE LLENSHLTPN ENSBTAP00000052860/1-763 RQAQAYRGQR VSPKNSTGIR VQKVPPDVRQ SLPNVQDDYE LLENSHLTPK BACU013135/1-637 RQAQAYRGQR ISAKNSTGIQ VQKVTQDMRQ SLPNMQDNYE LLENSHLTPN ENSTTRP00000000721/1-764 RQAQAYRGQR ISAKNSTGFQ VQKVTRDMRQ SLPNMQDNYE LLENSHLTPN 751 800 ENSP00000441235/1-764 KQGQISEEYM QTVL bmy_14144T0/1-551 KQDQIPKEYK QTVL ENSBTAP00000052860/1-763 QQDQTSKEYK QTVL BACU013135/1-637 KQEQISKEYK QTVL ENSTTRP00000000721/1-764 KQDQISKEYK QTVL