KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:54 2014 Check: 00 .. Name: ENSBTAP00000052778/1-529 Len: 550 Check: 3931 Weight: 1.00 Name: ENSTTRP00000007615/1-345 Len: 550 Check: 1534 Weight: 1.00 Name: bmy_14221T0/1-546 Len: 550 Check: 4510 Weight: 1.00 Name: BACU011056/1-547 Len: 550 Check: 8135 Weight: 1.00 // 1 50 ENSBTAP00000052778/1-529 MDGADVWAKT LVQLMAQTKP KDIWELVPQE NLASGHLDSS GFQYRLRGLS ENSTTRP00000007615/1-345 MDGVDVWATT LAQLMAKRKP QDTWELVPEE NLASGHLDSS GFQYRLRGLS bmy_14221T0/1-546 MDGVDVWAST LAQLMAKRKP QDTWELVPEE NLASGHLDSS GFQYRLRGLS BACU011056/1-547 MDGVDVWAST LAQLMAKRKP QDTWELVPEE NLASGHLDSS GFQYRLRGLS 51 100 ENSBTAP00000052778/1-529 RLQCGRCQWG WASAHVHVLF HLWWDEAGRR GLVKMRVWGQ RCRL-CPPGG ENSTTRP00000007615/1-345 ---------- ---------- ---------- ---------- ---------- bmy_14221T0/1-546 RLQCGRCQWG WSSAHVHILF HLWWDEDARQ GLVKMRIWAQ RCRL-CPPGG BACU011056/1-547 RLQCGRCQWG WSSAHVHILF HLWWAEDARQ GLVKMRTWAQ RCRLRAPPGG 101 150 ENSBTAP00000052778/1-529 AECRVSLLSV RLFLGKLVRF IERKCYAEGP GSNQGPEVCF GERCEACDLG ENSTTRP00000007615/1-345 ---------- ---------- ---------- ---------- ---------- bmy_14221T0/1-546 VACQVSLLNV RLFLNKLVQF IVQKCYGEGP GSDQCPEICF GEHCEACDLG BACU011056/1-547 AACQVSLLNV RLFLNKLVQS IVQKCYGEGP GSDQCPEICF GEHCEACDLG 151 200 ENSBTAP00000052778/1-529 VCFFQQPPDP AWGPEGRSSG SIKGRFTLYS SGDEAAPATS RQLRTLGRGL ENSTTRP00000007615/1-345 ---------- ---------- ---------- ---------- ---------- bmy_14221T0/1-546 VCFFQKPPDP AWGPEVKSPS TIKGRFTLYG GSNVDAPTAS QQLRTLGCGL BACU011056/1-547 VCFFQKPPDP AWGPEVKSPS TIKGRFTLYG GSNVDAPTAS QQLRTLGCGL 201 250 ENSBTAP00000052778/1-529 LVDRPRGCTP DAIAVPLYAA DFIRSPIAEG R--------- --------HR ENSTTRP00000007615/1-345 ---------- ---------- ---------- ------DEEI VTVPFSLVRE bmy_14221T0/1-546 VVDRSRGYTP NSITVPLSVA DFIKNPLSEG RDFFGEDEEI VTVPFSLVRK BACU011056/1-547 VVDRSRGYTP NSITVPLSVA DFIKNPLSEG RDFFGEDEEI VTVPFSLVRK 251 300 ENSBTAP00000052778/1-529 AQGLAGESAG RQHIIGRGSL YLPANSKATS KGRRFPVNIK APVFHGKGLL ENSTTRP00000007615/1-345 DKGPVAPAA- ---TVGRGSP YLPTSSKATS KGKRFPVNIK VPVFHGKGLV bmy_14221T0/1-546 DKGPVADPAG -PLIVGRGSL YLPTSSKATS KGKRFPVNIK APVFHGKGLL BACU011056/1-547 DKGPVADPAG -PLIVGRGSL YLPTSSKATS KGKRFPVNIK APVFHGKGLL 301 350 ENSBTAP00000052778/1-529 LSGAKATTGF IYQGLGCVSE PDEDGDEGEG EDEGADWGAP SSSTRL---V ENSTTRP00000007615/1-345 LSGTKEMTGF IYKGHGCISD PD-------G ADDG--WGPA FSSSGA---V bmy_14221T0/1-546 LSGTKEMTGF IYKGHGCVSD PDEDENEDED ADDG--WGPA FGSSGPIIEV BACU011056/1-547 LSGTKEMTGF IYKGHGCVSD PDEDENEDED ADDG--WGPA FGSSGPIIEV 351 400 ENSBTAP00000052778/1-529 PVGGSPRPMT YIVGLMDNGE GSVTFPSSLT DVLLEDADAF DLVYGSLTFP ENSTTRP00000007615/1-345 TEGKHPRPVT YIIGLRHNGQ GSVTFPSSLT NVVLEGEDPF DLIYGSLTFP bmy_14221T0/1-546 TEGNGPRPMT YIIGLMNNGE GSVTFPSSLT NVVLEGEDPF DLIYGSLTFP BACU011056/1-547 TEGNGLRPMT YIIGLMNNGE GSVTFPSSLT NVVLEGEDPF DLIYGSLTFP 401 450 ENSBTAP00000052778/1-529 FMFAYEGRVA ASSASGPQGK GQVAGGGGPP AEGRERLLGT DVGGWVPLGE ENSTTRP00000007615/1-345 FIFATKGKGG ASSAGVTEGK GKGDGGSGPA TTGCEPLPGT NASGPVPISE bmy_14221T0/1-546 FIFADKGRGG SSSAGIIEGK GKEDGGSGPA TAGREPLPGT NAGGPVPISE BACU011056/1-547 FIFADKGKGG ASSAGVTEGK GKEDGDSGPA TAGREPLPGT NAGGPVPISE 451 500 ENSBTAP00000052778/1-529 GSVTVPFSVF SIIQSKSSGR KARGPQGDGL APQGSSKKRK QPGPHASRFR ENSTTRP00000007615/1-345 GSVTIPFSVL SIIQSKGSSS DDSGPESNGL ATPGFSKKQR QPGPRAGKSG bmy_14221T0/1-546 GAVTIPFSVL SIIQSKGSGN DASGPQNNGL ATHGFSKKQR QPGPRAGKSG BACU011056/1-547 GSVTIPFSVL SIIQSKGSGN DASGPQSNGL ATHGFSKKQR QPGPRAGKSG 501 550 ENSBTAP00000052778/1-529 PSPPGDEGFC WAEGFCFDPY EEVWIWVSLA VCVLWIMYLC KFSPDRSPWV ENSTTRP00000007615/1-345 PGCYWEEDF- --RRLRFDPY EEVWIWVSMT VRILWIMYLY KFSPDHSPRV bmy_14221T0/1-546 PGSYWEEDFC WAEGFCFDPY EEVWIWVSMT VCILWIMYLY KFSPDHSPRV BACU011056/1-547 PGSYWEEDFC WAEGFCFDPY EEVWIWVSVT VCILWIMYLY KFSPDHSPRV