KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:25 2014 Check: 00 .. Name: ENSTTRP00000004999/1-720 Len: 737 Check: 3517 Weight: 1.00 Name: bmy_14435T0/1-489 Len: 737 Check: 8758 Weight: 1.00 Name: ENSBTAP00000051991/1-721 Len: 737 Check: 6235 Weight: 1.00 Name: BACU001645/1-722 Len: 737 Check: 1875 Weight: 1.00 // 1 50 ENSTTRP00000004999/1-720 MDDSETPTYN LQIEPQVGCH PGDGVESTVT CLPSASDENE NQL--DGDGH bmy_14435T0/1-489 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000051991/1-721 MDDSETPAYN LQIEPQDGCH PGDGVESKVT CLPSASDENE NQL--DGDGL BACU001645/1-722 MDDSETPTYN LQIEPQDGCH PGDGVESIVT CLPSASDENE NQLDGDGDGH 51 100 ENSTTRP00000004999/1-720 ELLTSSDSAM GKPEAFEPDS LNNNESCTSS CEVAAGENLE NTACEGPKDG bmy_14435T0/1-489 NLLSD----- -KPQ-LGPDH ---------- ------ESLD ---------- ENSBTAP00000051991/1-721 ELLTSSGSAM GKPEVLEQDS LNNNESCTPS CEVAASENSE NISCESPKDG BACU001645/1-722 ELLTSSDSAM GKPEVFEPDS LNNNESCTSS CEVAASENLE NTACEGPKDG 101 150 ENSTTRP00000004999/1-720 QAFLRKDQKI PG-KSSRSKK GTVKKIPQGL SSGDTTPFMQ ENILHAAIHA bmy_14435T0/1-489 ---------- ---------- ---------- ------PTLP SSALYTVQHF ENSBTAP00000051991/1-721 QVFLRKDHKI PGSRSPRSKR GTVKKIPQGL SSEDSTPLMQ ENILHVVTHA BACU001645/1-722 QAFLRKDQKI PGKRSSRSKK GTVKKIPQGL SSGDTTPFMQ ENILHAAIHA 151 200 ENSTTRP00000004999/1-720 VSDEESAEVN ANDQLEAPKL VLQSL-FSLI RGEVEQLDSR ALPLCLHQIA bmy_14435T0/1-489 VY-------- ------IPNI IAQLLALGLS FSEISKENEK SVS---HEIA ENSBTAP00000051991/1-721 VSDEESAEVN ANDQLEASKL VLQSL-FSLI RGEVEQLDSR ALPLCLHQIA BACU001645/1-722 VSDEESAEVN ANDQLEAPKL VLQSL-FSLI RGEVEQLDSR ALPLCLHQIA 201 250 ENSTTRP00000004999/1-720 ESYFQEEDY- ---------- EKAMKFIQLE RLYHEQLLAN LSAIQEQWET bmy_14435T0/1-489 ESYFQEEDYS PKYTLERMYH EKAMKFIQLE RLYHEQLLAN LSAIQEQWET ENSBTAP00000051991/1-721 ESYFQEEDY- ---------- EKAMKFIQLE RLYHEQLLAN LSAIQEQWET BACU001645/1-722 ESYFQEEDY- ---------- EKAMKFIQLE RLYHEQLLTN LSAIQEQWET 251 300 ENSTTRP00000004999/1-720 KWKTVQPHTV TSLRNSEKGF NGEDFERLAK FCTTHQDPLL SKHKIAAVQK bmy_14435T0/1-489 KWKTVQPHTV TSLRNSEKGF NGEDFERLAK FCTTHQDPLL SKHKMAAVQK ENSBTAP00000051991/1-721 KWKTVQPHTV TPLRNSEKGF NGEDFERLAK FCATHQDPLL SKDKIAAVQK BACU001645/1-722 KWKTVQPHTV TSLRNSERGF NGEDFERLAK FCTTHQDPLL SKHKMAAVQK 301 350 ENSTTRP00000004999/1-720 SLGRKCFMQL IVSEDPKERG ATAKEPXXXX XXXXXXXXXX XXXXXXXXXX bmy_14435T0/1-489 SPGRKCFTQL IVSEDPKERG ATAKEPESET CLGMESGKES HRKKETRESS ENSBTAP00000051991/1-721 SLGRKCFTQL IVSEDPKERG ATAKELESEI CLGMESGKES QHKEETLESS BACU001645/1-722 SLGRKCFTQL IVSEDPKERG ATAKEPESET CLGMESGKES HHKKETRESS 351 400 ENSTTRP00000004999/1-720 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14435T0/1-489 PCCNQMDRQA DPLSLPVTAG KGHTEEPPCS AEATLELHAL PLESAGSRSE ENSBTAP00000051991/1-721 PCCNEMVRQA DPRSLPVTAR KGHTEEPLCS SEATQELHAQ PSESAGSRSS BACU001645/1-722 PCCNQM---A DPLSLPVTAG KGHTEEPPCS AEATLELHAL PLESAGSRSG 401 450 ENSTTRP00000004999/1-720 XXXXXXXXXD DSRLQLTQSE ASQDVAEIEG IAKDPKVSSE SVIEPLILPG bmy_14435T0/1-489 LHSTGNACED DSXLQLTPSE ANQDVAEIEG IAKDPKVSSE SVIEPLILPG ENSBTAP00000051991/1-721 PHSSGNAPED DSRLQLAQTE ACQDVAETER IAKNPKVSSQ SVTEPLILPG BACU001645/1-722 LHSSGNACED DSRLQLTPSD ASQDVAEIEG IAKDPKVSSE SVIEPLILPG 451 500 ENSTTRP00000004999/1-720 SDHIPPALIS EGKYSQTQRK ELQLLLEDAS EALPTDQLEN NELNELQQPD bmy_14435T0/1-489 SDHIPPALIS EGKYSQTQRK ELQLLLQDAS EALPTDQLEN NELNELQQPD ENSBTAP00000051991/1-721 SDHIPPALIS EGKYS--QRK ELRLPLRDAS EALPTDQLEN NELNELQQPD BACU001645/1-722 SDHIPPALIS EGKYSQAQRK ELQLLLQDAS EALPTDQLEN NELNELQQPD 501 550 ENSTTRP00000004999/1-720 LTDSDGKSPQ GQTDSEGSES VLCENNQVSD LSTVLPEVYM APEEQGDKHE bmy_14435T0/1-489 LTDSDGKSPQ GQTDSEGSES VLCENNQVSD LSTVLPEVYM APEEQGDKHE ENSBTAP00000051991/1-721 LTERDGKSPQ GQADSEGSES VLCENNPVSD LSTVLPEVYM APEEQGDKEE BACU001645/1-722 LTDSDGKSPQ GQTDSEGSES VLCENNQVSD LSTVLPEVYM APEEQGDKHE 551 600 ENSTTRP00000004999/1-720 QVSKETEDYL NSLLEECLKD TEDSLSYEDN QEEDADLLQD LSPEEESYSL bmy_14435T0/1-489 QVSKETEDYL NSLLEGCLKD TEDSLSYEDN QEEDPDLLQD LSPEEESYSL ENSBTAP00000051991/1-721 QVSKETDDYL NSLLGGCLKD TEDSLSYEDN QEEDSDFLQD LSPEEASYSL BACU001645/1-722 QVSKETEDYL NSLLEGCLKD TEDSLSYEDN QEEDPDLLQD LSPEEESYSL 601 650 ENSTTRP00000004999/1-720 QENLPSDESC LSLDDLAKRI EIAEVVHAEG LVSILKKRNN TVGDHPAQMQ bmy_14435T0/1-489 QENLPSDESC LSLDDLAKRI EIAE------ ---------- ---------- ENSBTAP00000051991/1-721 QENLPSDESC LSLDDLAKRI EIAEVVPAEG LVSILKKRND SVGDRPAQMQ BACU001645/1-722 QENLPSDESC LSLDDLAKRI EIAEVVHAEG LVSILKKRNN TVGDHPAQMQ 651 700 ENSTTRP00000004999/1-720 QKPSKRRVRF QEIDDSLDQD EVGGGSCILL VLLCIVTVFL SVGGTALYCT bmy_14435T0/1-489 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051991/1-721 QKPSKRRVRF QEIDDSLDQD EVGGGSCILL VLLCIVTVLL SVGGTALYCT BACU001645/1-722 QKPSKRRVRF QEIDDSLDQD EVGGGSCILL VLLCIATVFL SVGGTALYCT 701 750 ENSTTRP00000004999/1-720 FGDTESPVCT DFAD-MDFYY TKLL-GMAGL KHWIYLS bmy_14435T0/1-489 ---------- ---------- ---------- ------- ENSBTAP00000051991/1-721 FGDMGSPVCT DFADNVDFYY TKLLQGIAEL KHWIYLS BACU001645/1-722 FGDTESPVCT DFADNVDFYY TKLLQGMAGL KHWIYLS