KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:10 2014 Check: 00 .. Name: ENSTTRP00000002003/1-845 Len: 869 Check: 9328 Weight: 1.00 Name: ENSP00000400513/1-847 Len: 869 Check: 1570 Weight: 1.00 Name: ENSBTAP00000051570/1-832 Len: 869 Check: 7290 Weight: 1.00 Name: bmy_15955T0/1-787 Len: 869 Check: 9260 Weight: 1.00 Name: BACU010107/1-834 Len: 869 Check: 8964 Weight: 1.00 // 1 50 ENSTTRP00000002003/1-845 ---MKRFFFL DLFTMLRLRA ICPFSWRVFQ FRPFSFEPLL SRMNKCTDEE ENSP00000400513/1-847 MKKTPVFLES LVTNMLRLRA ICPFSWRVFQ FRPISCEPLI IQMNKCTDEE ENSBTAP00000051570/1-832 ---------- ----MLCLRA IRPFSSRVFH FRPFSFEPLI SQMNNCTDEE bmy_15955T0/1-787 ---------- ----MLRLRA ICPFSWRVFQ FRTFSFEPLL SQMNKCTDEE BACU010107/1-834 ---------- ----MLRLRA ICPFSWRVFQ FRPFSFEPLL NQMNKCTDEE 51 100 ENSTTRP00000002003/1-845 QIFDLIEKNK AILSEKQVAC ALSMLWQFQK QKTSLLKNVE CIRDHPQFLT ENSP00000400513/1-847 QMFGFIERNK AILSEKQVGC AFDMLWKLQK QKTSLLKNAE YVRDHPQFLT ENSBTAP00000051570/1-832 QIFGLIEKNK SLLSEKQVGC ALSMLWQFQK QKTSSVKNVD CIRNHPQFLT bmy_15955T0/1-787 QIFDLIEKNK DILSEKQVAC ALSMLWQFQK QKSSLLKNVE WIRDHPQFLT BACU010107/1-834 QIFDLIEKNK DILSEKQVAC ALSMLWQFQK QKSILLKNVE CIRDHPQFLT 101 150 ENSTTRP00000002003/1-845 LHNLATTKME FMNDNTLVNV LYIIQQFGFE AHDPLVEALV TEAWRRLERF ENSP00000400513/1-847 LHNLATNKFK LMNDDTLVNV LYVTQQFAGE AHDPLVEALV TEAWRRLERF ENSBTAP00000051570/1-832 LCNLATTKMG FMSDSTLVNV LYIIQQFGIE AHDSLVEALV TEAWRRLERF bmy_15955T0/1-787 LHNLTTTKME FMNDSTLVNV LYIIQQFGFE AHDPLVEALV TEAWRRLERF BACU010107/1-834 LHNLTTTKME FMNDSTLVNV LYIIQQFGFE AHDPLVEALV TEAWRRLERF 151 200 ENSTTRP00000002003/1-845 DINMLSKFSS CLADQHLCFS PLMGKIADIV NRNLETIQDL RCLSVLMVSI ENSP00000400513/1-847 DIKLLSEFSS CLADQHLYFS PLMGKIADIV HRNLETTQDL SSLSVLMVNI ENSBTAP00000051570/1-832 DISVLSKFSS CLADQHLYYS PLMGKIADIV NRNLENIQDL RSLSVLMVSI bmy_15955T0/1-787 DINVLSKFSS CLADQHLCFS PLMGKIADIV NRNLETIQDL RCLSVLMVSI BACU010107/1-834 DINVLSKFSS CLADQHLCFS PLMGKIADIV NRNLETIQDL RCLSVLMVSI 201 250 ENSTTRP00000002003/1-845 SSLISQRFQE QLVNKAEQLF DTIDSSQVNI ARRIVQFLRN IKYSYYPLLE ENSP00000400513/1-847 SSLISRHFQQ QLVNKTELLF DTIDSSEVNV AKSIAKFLRN VRYRYQPLLE ENSBTAP00000051570/1-832 SSLISRRFQE KLVNKAELLF DTMDSSQVNT ARRIVQFLRN IKYRYYPLLE bmy_15955T0/1-787 SSLISQRFQE QLVNKTEQLF DTIDSSQVNI ARRIVQFLRN IKYSYYPLLE BACU010107/1-834 SSLISQRFQE QLVNKTEQLF DTIDSSQVNI ARRIVQFLRN IKYSYYPLLE 251 300 ENSTTRP00000002003/1-845 RCNKVFLSNV NHLDLDSISK ILSLYHSLQF HSFEFLLMTK KRLTELIPLF ENSP00000400513/1-847 RCNNVFLSNV DHLDLDSISK ILSVYKFLQF NSFEFIIMAK KKLTEMIPLC ENSBTAP00000051570/1-832 RCNKVFLSNM NHLDLDSISK ILSLYYSLQF HSFEFILMTK KRLTEMIPLF bmy_15955T0/1-787 RCNXVFLSNV NHLDLDSISK ILNLYHSLQF HSFEFILMTK KRLTEMIPLF BACU010107/1-834 RCNKVFLSNV NHLDLDSISK ILSLYHSLQF HSFEFILMTK KRLTEMIPLF 301 350 ENSTTRP00000002003/1-845 DHPASFVKLF VTLGPLAGPE EEKQLKSTML LMSEELTSQQ ALAVMGAMEE ENSP00000400513/1-847 NHPASFVKLF VALGPIAGPE EKKQLKSTML LMSEDLTGEQ ALAVLGAMGD ENSBTAP00000051570/1-832 DHPASCVKLF VALGPMAGPE EKKQLKSTIL LMSEELTGQQ ALAVMGAMEE bmy_15955T0/1-787 DHPASFVKLF VTLGPVAGPE EEKQLKSTIL LMSEELTSQQ ALAVMGAMAE BACU010107/1-834 DYPASFVKLF VTLGPVAGPE EEKQLKSTIL LMSEELTSQQ ALAVMGAMEE 351 400 ENSTTRP00000002003/1-845 MESRNSRLIK KIASILYKHL DNYKPVELLR ITQALIFLHF QSKELFVKLR ENSP00000400513/1-847 MESRNSCLIK RVTSVLHKHL DGYKPLELLK ITQELTFLHF QRKEFFAKLR ENSBTAP00000051570/1-832 MESRNLRLIK KITSILHKHL DNYKPVELLR ITQALIFLHF QSKELFVKLR bmy_15955T0/1-787 MESRNSRLIK KVVG------ ---------- --------SF ESRNG----- BACU010107/1-834 MESRNSHLIK KIASILHKHL DNYKPVELLR ITQASIFLHF QSKELFVKLR 401 450 ENSTTRP00000002003/1-845 ELLLSYLKVS VIPSEISLLV CALSMLPSPH LDEARISQIE AVLPQCDLND ENSP00000400513/1-847 ELLLSYLKNS FIPTEVSVLV RAISLLPSPH LDEVGISRIE AVLPQCDLNN ENSBTAP00000051570/1-832 ELLLSYLKVS VIPSEISILV YALSMLPSAH LDEVRMSQIE AVLPQCDLYD bmy_15955T0/1-787 -----YLKVS VIPSEISLLV CALSMLPSPH LDEARISQIE AVLPQCDLND BACU010107/1-834 ELLLSYLKVS VIPSEISLLI CALSMLPSPH LDEARISQIE AVLPQCDLND 451 500 ENSTTRP00000002003/1-845 LNSFATSVLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400513/1-847 LSSFATSVLR WIQHDHMYLD NMTAKQLKLL QKLDHYGRQR LQHSNSLDLL ENSBTAP00000051570/1-832 LNIFATSVLR CIQYDHVYLN NIPAKQLKVL QKLDHYGHQR LQECKSLNLL bmy_15955T0/1-787 LNSFATSVLR CIQYDHMYRN NIPGKQLKLL QKLDHYGRQR LQKCSSLNLL BACU010107/1-834 LNSFATSVLR CIQYDHMYRN NIPGKQLKLL QKLDHYGRQR LQKCSSLNLL 501 550 ENSTTRP00000002003/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400513/1-847 RKELKSLKGN TFPESLLEEM IATLQHFMDD INYINVGEIA SFISSTDYLS ENSBTAP00000051570/1-832 WEEVKSLKGD WFADSLLEET VVTLQRLMDE MNYINVAGIA SFISRTNYLS bmy_15955T0/1-787 WEEVKSLKGD WFADSLLEET VVTLQRLMDE INYINVAGIA SFISRTNYLS BACU010107/1-834 WEEVKSLKGD WFADSLLEET VVTLQRLMDE INYINVAGIA SFISRTNYLS 551 600 ENSTTRP00000002003/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400513/1-847 TLLLDRIASV AVQQIEKIHP FTIPAIIRPF SVLNYDPPQR DEFLGTCVQH ENSBTAP00000051570/1-832 TSLLDKIASV VLQQIEKIHP FAILAIILPF STLNYDPPQR DEFFGTCIQH bmy_15955T0/1-787 TSLLDRIGSV VLQQIEKIHP FAILAIILPF SALNYDPPQR DEFFGTCLQR BACU010107/1-834 TSLLDRIASV VLQQIEKIHP FAILAIILPF SALNYDPPQR DEFFGTCLQR 601 650 ENSTTRP00000002003/1-845 XXXXX----- ---------- -----XXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400513/1-847 LNSYL----- ---------- -----GILDP FILVFLGFSL ATLEYFPEDL ENSBTAP00000051570/1-832 LNSYL----- ---------- -----SVLDP LVLVFLGYSL ATLQYFPEDL bmy_15955T0/1-787 LNSYLSRYIV WYYTDEEDIR DESLRSILDP LMLVFLGYSL ATREYFSEDL BACU010107/1-834 LNSYL----- ---------- -----SILDP LMLVFLGYSL ATREYFSEDL 651 700 ENSTTRP00000002003/1-845 XXXXXXXXXX XXXXXXXXXL CSSLNMKVQF RLMELNRAVC LECPEYQIPW ENSP00000400513/1-847 LKAIFNIKFL ARLDSQLEIL SPSRSARVQF HLMELNRSVC LECPEFQIPW ENSBTAP00000051570/1-832 LKAIFNIKFL ARLDSQLELI YSSLNMKIQF RLMELNRAVC LECPEYQIPW bmy_15955T0/1-787 LKAIFNIRFL AKLDSQLELL CSSLNMKVQF RLMELNRAVC LECPEYQIPW BACU010107/1-834 LKAIFNIRFL AKLDSQLELL CSSLNMKVQF RLMELNRAVC LECPEYQIPW 701 750 ENSTTRP00000002003/1-845 FHDRFCQQQY KKDFGRMNGA QQQIYKMLAE VLGGINFVKA SVLTPYYYTI ENSP00000400513/1-847 FHDRFCQQ-Y NKGIGGMDGT QQQIFKMLAE VLGGINCVKA SVLTPYYHKV ENSBTAP00000051570/1-832 FHDRFCQQHY NKDFGSMNGA QQQIYKMLAE VLGGINFVKA SVLTPYYYTV bmy_15955T0/1-787 FHDRFCQQQY KKDFGSMNGA QQQIYKMLAE VLGGINFVKA SVLTPYYYTI BACU010107/1-834 FHDRFCQQQY KKDFGSMNGA QQQIYKMLAE VLGGINFVKA SVLTPYYYTI 751 800 ENSTTRP00000002003/1-845 DFECILDKRK KPIPYGSHNT TSGKLPKIHS ELNTQIAGSR LPPGAEKIAL ENSP00000400513/1-847 DFECILDKRK KPLPYGSHNI ALGQLPEMPW ESNIEIVGSR LPPGAERIAL ENSBTAP00000051570/1-832 DFECILDKRR NPLPYGSHNT TLEKLPKIHL ESNTQIPGSR LPPGAEKIAL bmy_15955T0/1-787 GKSAMKKRHL EILGY----- ---------- ---------- ------RVIQ BACU010107/1-834 DFECILDKRK NPLPYGSHNT TLGKLPKIHS ELNTQIAGSR LPPGAEKIAL 801 850 ENSTTRP00000002003/1-845 EFLDSRAFCR NIPHLKGKSA MKKRHLEILG YH-VIQIPHF EWNSMALSTK ENSP00000400513/1-847 EFLDSKALCR NIPHMKGKSA MKKRHLEILG YR-VIQISQF EWNSMALSTK ENSBTAP00000051570/1-832 EFLDSRAFCR NIPHLKGKSA MKKRHLEILG YH-VIQIPHF EWNSMALSTR bmy_15955T0/1-787 EQEDERS-CE AEKGLPG--V VKKKATFQIG FKGYAYIPHF EWNSMALSTK BACU010107/1-834 EFLDSRAFCR NIPHLKGKSA MKKRHLEILG YR-VIQIPHF EWNSMALSTK 851 900 ENSTTRP00000002003/1-845 NARMDYLRER IFGEGKSSS ENSP00000400513/1-847 DARMDYLREC IFGEVKSCL ENSBTAP00000051570/1-832 DARMDYLRER IFGEGKS-- bmy_15955T0/1-787 NARMDYLRER IFGEGKSSS BACU010107/1-834 NARMDYLRER IFGEGKSSS