KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:07 2014 Check: 00 .. Name: BACU016879/1-940 Len: 941 Check: 6165 Weight: 1.00 Name: ENSBTAP00000051530/1-730 Len: 941 Check: 9676 Weight: 1.00 Name: bmy_07656T0/1-650 Len: 941 Check: 6893 Weight: 1.00 Name: ENSTTRP00000003247/1-731 Len: 941 Check: 6590 Weight: 1.00 // 1 50 BACU016879/1-940 MVFCLENEEL RRPLGSTMVH LQASEVQQLL HNKFVVILGD SIQRAVYKDL ENSBTAP00000051530/1-730 -MWGL----- ---------- ---------- ---------- ---------- bmy_07656T0/1-650 -MWCL----- ---------- ---------- ---------- ---------- ENSTTRP00000003247/1-731 -MWGL----- ---------- ---------- ---------- ---------- 51 100 BACU016879/1-940 VLLLQKDSLL TAAQLKAKGE LSSEQDQLVA GGQLGELHNG TQYREVRQFC ENSBTAP00000051530/1-730 ---------- ---------- ---------- ---------- ---------- bmy_07656T0/1-650 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003247/1-731 ---------- ---------- ---------- ---------- ---------- 101 150 BACU016879/1-940 SGSGHHLVRF YFLTRVYSEY LEGVLEELTY GPAPDLVIIN SCLWDLSRYG ENSBTAP00000051530/1-730 ---------- ---------- ---LLALATF APAVDVGLGA PSTSVLGLAS bmy_07656T0/1-650 ---------- ---------- ---LLALATF APAVGVSLGA SGASVLGLAS ENSTTRP00000003247/1-731 ---------- ---------- ---LLALATF APAVGLSLGA SGASVLGLAS 151 200 BACU016879/1-940 RCSMESYREN LERVFMRMDQ VLPDSCLLLH FLTQLQPLAG SLRRDVVEGN ENSBTAP00000051530/1-730 PATTKV---- ------PV-- PTPHS----- --SPAQPSAG K--------- bmy_07656T0/1-650 PATTEA---- ------PVST PAPRS----- --SQAELSAG N--------- ENSTTRP00000003247/1-731 PATTEA---- ------PVST PAPRS----- --SQAELSAG N--------- 201 250 BACU016879/1-940 FYSATLAGDH CFDVLDLHFH FRHAVQHRHR DGVHWDQHAH RHLSHLLLTH ENSBTAP00000051530/1-730 ---------- ---------- ---------- ---------- ---------- bmy_07656T0/1-650 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003247/1-731 ---------- ---------- ---------- ---------- ---------- 251 300 BACU016879/1-940 VADAWGVELP KRDYPHGTSE QHVRIRVIKK KKIIMKKRKK LTPPRPPVTA ENSBTAP00000051530/1-730 ---------- ----ENGTSE QHVRIRVIKK KKIVMKKRKK LTRPTPPVTA bmy_07656T0/1-650 ---------- ----ENGTSE QHVRIRVIKK KKIIMKKRKK LTPPRPPVTA ENSTTRP00000003247/1-731 ---------- ----KNGTSE QHVRIRVIKK KKIIMKKRKK LTPPRPPVTA 301 350 BACU016879/1-940 RASVTTSPAR TLDLPEKQEP DCPPLGLESL RVSDNQLDAS SSQSFGLGPH ENSBTAP00000051530/1-730 RPSVTTSPSG TLDLPEKQEP DCPPLGLESL RVSDNQLDAS SSQSFGLGPH bmy_07656T0/1-650 RASVTTSPAR TLDLPEKQEP DCPPLGLESL RVSDNQLDAS SSQSFGLGPH ENSTTRP00000003247/1-731 RASVTTSPAR TLDLPEKQEP DCPPLGLESL RVSDNQLDAS SSQSFGLGPH 351 400 BACU016879/1-940 RGRLNIQSGL EDGDLFDGAW CAEQQDAKPW LQVDARHPTR FSGIITQGRN ENSBTAP00000051530/1-730 RGRLNIQSGL EDGDLFDGAW CAEQQDAEPW LQVDARHPTR FSGIITQGRN bmy_07656T0/1-650 RGRLNIQSGL EDGDLFDGAW CAEQQDAKPW LQVDARHPTR FSGIITQGRN ENSTTRP00000003247/1-731 RGRLNIQSGL EDGDLFDGAW CAEQQDAEPW LQVDARHPTR FSGIITQGRN 401 450 BACU016879/1-940 SIWRYDWVTS YKVQFSNDSL TWWGSKNRSS GMDAVFPANS DPETPVLNLL ENSBTAP00000051530/1-730 SIWRYDWVTS YKVQFSNDSR TWWGSKNRSS GMDAVFPANS DPETPVLNLL bmy_07656T0/1-650 SIWRYDWVTS YKVQFSNDSL TWWGSKNRSS GMDAVFPANS DPETPVLNLL ENSTTRP00000003247/1-731 SIWRYDWVTS YKVQFSNDSL TWWGSKNRSS GMDAVFPANS DPETPVLNLL 451 500 BACU016879/1-940 PEPQVARFIR LLPQTWLQGG ASCLRAEILA CPVSDPNGLL PEVPVLGSSD ENSBTAP00000051530/1-730 PEPQVARFIR LLPQTWLQGG ASCLRAEILA CPVSDPNGLF PEVPMLGSSD bmy_07656T0/1-650 SEPQVARFIR LLPQTWLQGG ASCLRAEILA CPVSDPNGLL PEVPVLGSSD ENSTTRP00000003247/1-731 PEPQVARFIR LLPQTWLQGG ASCLRAEILA CPVSDPNGLF PEVPVLGSSD 501 550 BACU016879/1-940 TLDFRHHDYK AMRKLMKQVN EQCPNITRVY SIGRSHQGLK LYVMEMSDQP ENSBTAP00000051530/1-730 SLDFRHHDYK AMRKLMKQVN EQCPNITRIY SIGKSHQGLK LYVMEMSDQP bmy_07656T0/1-650 TLDFRHHDYK AMRKLMKQVN EQCPNITRVY SIGRSHQGLK LYVMEMSDQP ENSTTRP00000003247/1-731 TLDFRHHDYK AMRKLMKQVN EQCPNITRVY SIGKSHQGLK LYVMEMSDQP 551 600 BACU016879/1-940 GEHELGEPEV RYVAGMHGNE ALGRELLLLL MQFLCREFLR GDPRVTRLLT ENSBTAP00000051530/1-730 GEHELGEPEV RYVAGMHGNE ALGRELLLLL MQFLCHEFLR GDPRVTRLLT bmy_07656T0/1-650 GEHELGEPEV RYVAGMHGNE ALGRELLLLL MQFLCREFLR GDPRVTRLLT ENSTTRP00000003247/1-731 GEHELGEPEV RYVAGMHGNE ALGRELLLLL MQFLCREFLR GDPRVTRLLT 601 650 BACU016879/1-940 ETRIHLLPSM NPDGYETAFR RGSELVGWAE GRWNHQGIDL NHNFADLNTP ENSBTAP00000051530/1-730 ETRIHLLPSM NPDGYETAFR RGSELVGWAE GRWNHQGIDL NHNFADLNTP bmy_07656T0/1-650 ETRIHLLPSM NPDGYETAFR RGSELVGWAE GRWNHQGIDL NHNFADLNTP ENSTTRP00000003247/1-731 ETRIHLLPSM NPDGYETAFR RGSELVGWAE GRWNHQGIDL NHNFADLNTP 651 700 BACU016879/1-940 LWEAEDDGLV PDSVPNHHLP LPTYYTLPNA TVAPETRAVI KWMERIPFVL ENSBTAP00000051530/1-730 LWEAEDEGLV PDTVPNHHLP LPTYYTLPNA TVAPETWAVI KWMQRIPFVL bmy_07656T0/1-650 LWEAEDDGLV PDTVPNHHLP LPTYYTLPNA TVAPETRAVI KWMERIPFVL ENSTTRP00000003247/1-731 LWEAEDDGLV PDTVPNHHLP LPTYYTLPNA TVAPETRAVI KWMERIPFVL 701 750 BACU016879/1-940 SANLHGGELV VSYPFDMTRT PWAARELTPT PDEAVFRWLS TVYAGTNWAM ENSBTAP00000051530/1-730 SANLHGGELV VSYPFDMTRT PWAARELTPT PDEAVFRWLS TVYAGTNRAM bmy_07656T0/1-650 SANLHGGELV VSYPFDMTRT PWAARELTPT PDEAVFRWLS TVYAGTNWAM ENSTTRP00000003247/1-731 SANLHGGELV VSYPFDMTRT PWAARELTPT PDEAVFRWLS TVYAGTNWAM 751 800 BACU016879/1-940 QDPDRRPCHS QDFSLYGNII NGADWHTVPG SMNDFSYLHT NCFEVTVELS ENSBTAP00000051530/1-730 QDPDRRPCHS QDFSLYGSII NGADWHTVPG SMNDFSYLHT NCFEVTVELS bmy_07656T0/1-650 QDPDRRPCHS QDFSLYGNII NGADWHTVPG T--------- ---------- ENSTTRP00000003247/1-731 QDPDRRPCHS QDFSSYGNII NGADWHTVPG SMNDFSYLHT NCFEVTVELS 801 850 BACU016879/1-940 CDKFPHENEL PQEWENNKDA LLTYLEQVRM GIAGVVKDKD TEIGIADAVI ENSBTAP00000051530/1-730 CDKFPHENEL PQEWENNKDA LLTYLEQVRM GIAGVVRDKD TELGIADAVI bmy_07656T0/1-650 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003247/1-731 CDKFPHENEL RQEWENNKDA LLTYLEQVRM GIAGVVRDKD TEIGIADAVI 851 900 BACU016879/1-940 AVDGINHDVT TAWGGDYWRL LTPGDYVVTA SAEGYHTATR SCRVTFEEGP ENSBTAP00000051530/1-730 SVDGINHDVT TAWGGDYWRL LTPGDYMVTA SAEGYHTVTR SCRVTFEEGP bmy_07656T0/1-650 ---------- --WGGDYWRL LTPGDYVVTA SAEGYHTATR SCRVTFEEGP ENSTTRP00000003247/1-731 AVDGINHDVT TAWGGDYWRL LTPGDYVVTA SAEGYHAATR NCRVTFEEGP 901 950 BACU016879/1-940 VPCNFHLTKT PKQRLRELLA AGAKVPPDLR RRLERLRGQN - ENSBTAP00000051530/1-730 VPCNFRLTKT PKQRLRELLA AGAKVPPDLR RRLERLRGQK N bmy_07656T0/1-650 VPCNFHLTKT PKQRLRELLA AGAKVPPDLR RRLERLRGQN - ENSTTRP00000003247/1-731 VPCNFHLTKT PKQRLRELLA AGAKVPPDLR RRLERLRGQN -