KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:28 2014 Check: 00 .. Name: ENSP00000312442/1-785 Len: 796 Check: 6188 Weight: 1.00 Name: ENSBTAP00000050701/1-656 Len: 796 Check: 4617 Weight: 1.00 Name: ENSTTRP00000010112/1-787 Len: 796 Check: 3114 Weight: 1.00 Name: bmy_13908T0/1-789 Len: 796 Check: 3737 Weight: 1.00 Name: BACU008659/1-787 Len: 796 Check: 3142 Weight: 1.00 // 1 50 ENSP00000312442/1-785 ---------- -MVVPSLKLQ DLIEEIRGAK TQAQEREVIQ KECAHIRASF ENSBTAP00000050701/1-656 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010112/1-787 ---------M VASSSLLKLQ DLIQEIREAK TQAQEREVIQ KECAHIRASF bmy_13908T0/1-789 MRSGGLLLRM VASSFSLKLQ DLIQEIREAK TQAQEREVIQ KECAHIRASF BACU008659/1-787 ---------M VASSSSLKLQ DLIQEIREAK TQAQEREVIQ KECAHIRASF 51 100 ENSP00000312442/1-785 RDGDPVHRHR QLAKLLYVHM LGYPAHFGQM ECLKLIASSR FTDKRVGYLG ENSBTAP00000050701/1-656 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010112/1-787 RDGDPLHRHR QLAKLLYVHL LGYPAHFGQM ECLKLIASPR FTDKRLGYLG bmy_13908T0/1-789 RDGDPLHRHR QLAKLLYVHM LGYPAHFGQM ECLKLIASPR FTDKRVGYLG BACU008659/1-787 RDGDPLHRHR QLAKLLYVHM LGYPAHFGQM ECLKLIASPR FTDKRVGYLG 101 150 ENSP00000312442/1-785 AMLLLDERHD AHLLITNSIK NDLSQGIQPV QGLALCTLST MGSAEMCRDL ENSBTAP00000050701/1-656 ---------- ---------- ---------- ---------- MGSAEMCRDL ENSTTRP00000010112/1-787 AMLLLDERQD AHLLITNSIK NDLSQGIQAV QGLALCTLSA TGSAEMCRDL bmy_13908T0/1-789 AMLLLDERQD AHLLITNSIK NDLSQGIQAV QGLALCTLSA TGSAEMCRDL BACU008659/1-787 AMLLLDERQD AHLLITNSIK NDLSQGIQAV QGLALCTLSA TGSAEMCRDL 151 200 ENSP00000312442/1-785 APEVEKLLLQ PSPYVRKKAI LTAVHMIRKV PELSSVFLPP CAQLLHERHH ENSBTAP00000050701/1-656 APEVEKLLLQ PSPYVRKKAV LTAVHMIRKV PELSDIFLPP CAQLLHERHH ENSTTRP00000010112/1-787 ATEVEKLLLQ PSAYVRKKAV LTAVHMIRKV PELSNIFLPP CAQLLHEHHH bmy_13908T0/1-789 ATEVEKLLLQ PSAYVRKKAV LTAVHMIRKV PELSNIFLPP CAQLLHEHHH BACU008659/1-787 ATEVEKLLLQ PSAYVRKKAV LTAVHMIRKV PELSNIFLPP CAQLLHEHHH 201 250 ENSP00000312442/1-785 GILLGTITLI TELCERSPAA LRHFRKVVPQ LVHILRTLVT MGYSTEHSIS ENSBTAP00000050701/1-656 GILLGTVTLI TELCERSPAA LQHFRKVVPQ LVHTLRTLVM TGCSAEHSVS ENSTTRP00000010112/1-787 GILLGTITLI TELCERSPAA LKHFRKMVPQ LVHILRTLVT TGYSTEHSIS bmy_13908T0/1-789 GVLLGTITLI TELCERSPAA LKHFRKMVPQ LVHILRTLVT TGYSTEHSIS BACU008659/1-787 GVLLGTITLI TELCERSPAA LKHFRKMVPQ LVHILRTLVT TGYSTEHSIS 251 300 ENSP00000312442/1-785 GVSDPFLQVQ ILRLLRILGR NHEESSETMN DLLAQVATNT DTSRNAGNAV ENSBTAP00000050701/1-656 GVSDPFLQVQ ILRLLRILGR NHEESSETMN DLLAQVATNT DTSRNAGNAV ENSTTRP00000010112/1-787 GVSDPFLQVQ ILRLLRILGR NHEESSETMN DLLAQVATNT DTSRNAGNAV bmy_13908T0/1-789 GVGDPFLQVQ ILRLLRILGR NHEESSEAMN DLLAQVATNT DTSRNAGHAV BACU008659/1-787 GVSDPFLQVQ ILRLLRILGR NHEESSETMN DLLAQVATNT DTSRNAGNAV 301 350 ENSP00000312442/1-785 LFETVLTIMD IRSAAGLRVL AVNILGRFLL NSDRNIRYVA LTSLLRLVQS ENSBTAP00000050701/1-656 LFETVLTIMD IRSAAGLRVL AVNILGRFLL NSDRNIRYVA LTSLLKLVQS ENSTTRP00000010112/1-787 LFETVLTIMD IRSAAGLRVL AVNILGRFLL NSDRNIRYVA LTSLLRLVQS bmy_13908T0/1-789 LFETVLTIMD IRSAAGLRVL AVNILGRFLL NSDRNIRYVA LTSLLRLVQS BACU008659/1-787 LFETVLTIMD IRSAAGLRVL AVNILGRFLL NSDRNIRYVA LTSLLRLVQS 351 400 ENSP00000312442/1-785 DHSAVQRHRP TVVECLRETD ASLSRRALEL SLALVNSSNV RAMMQELQAF ENSBTAP00000050701/1-656 DHSAVQRHRP TVVECLWEPD ASLSRRALEL SLALVNSSNV RAMTQELQGF ENSTTRP00000010112/1-787 DHSAVQRHRP TVVECLREPD VSLSRRALEL SLALVNSSNV QAMTQELQGF bmy_13908T0/1-789 DHSAVQRHRP TVVECLREPD GSLSRRALEL SLALVNSSNV RAMTQELQGF BACU008659/1-787 DHSAVQRHRP TVVECLREPD GSLSRRALEL SLALVNSSNV RAMTQELQGF 401 450 ENSP00000312442/1-785 LESCPPDLRA DCASGILLAA ERFAPTKRWH IDTILHVLTT AGTHVRDDAV ENSBTAP00000050701/1-656 LESCPPDLRA DCASGILLAA ERFAPTKRWH IDTILRVLTT AGTYVRDDAV ENSTTRP00000010112/1-787 LESCPPDLQA DCASGILLAA ERFAPTKRWH IDTTLRVLMT AGTHVRDDAV bmy_13908T0/1-789 LESCPPDLQA DCASGILLAA ERFAPTKRWH IDTTLRVLMT AGTHVRDDAV BACU008659/1-787 LESCPPDLQA DCASGILLAA ERFAPTKRWH IDTTLRVLMT AGTHVRDDAV 451 500 ENSP00000312442/1-785 ANLTQLIGGA QELHAYSVRR LYNALAEDIS QQPLVQVAAW CIGEYGDLLL ENSBTAP00000050701/1-656 ANLIQLIGGA QELHAYSVHR LYSALAEDIS QQPLVQVAAW CIGEYGDLLL ENSTTRP00000010112/1-787 ANLTQLIGGA QELHAYSVRR LYSALAEDIS QQPLVQVATW CIGEYGDLLL bmy_13908T0/1-789 ANLTQLIGGA QELHAYSVRR LYSALAEDIS QQPLVQVAAW CIGEYGDLLL BACU008659/1-787 ANLTQLIGGA QELHAYSVRR LYSALAEDIS QQPLVQVAAW CIGEYGDLLL 501 550 ENSP00000312442/1-785 AGNCEEIEPL QVDEEEVLAL LEKVLQSHMS LPATRGYALT ALMKLSTRLC ENSBTAP00000050701/1-656 EGTCEETEPL QVEKEEVLAL LERVLQSQMS LPATRGYALT ALMKLSTRLH ENSTTRP00000010112/1-787 EGSCEETEPL QVEEEEVLAL LERVLQSHMS LPATRGYALT ALVKLSTRLR bmy_13908T0/1-789 EGSCEETEPL QVEEEEVLAL LERVLQSHMS LPATRGYALT ALMKLSTRLR BACU008659/1-787 EGSCEETEPL QVEEEEVLAL LERVLQSHMS LPATRGYALT ALMKLSTRLR 551 600 ENSP00000312442/1-785 GDNNRIRQVV SIYGSCLDVE LQQRAVEYDT LFRKYDHMRA AILEKMPLVE ENSBTAP00000050701/1-656 GDNNRICQVM SIYGSCQNVE LQQRAVEYNA LFRKYDHLRA AVLEKMPLVE ENSTTRP00000010112/1-787 GDNNRIRQVV SIYSSCLDVE LQQRAVEYNT LFRKYDHMRA AILEKIPLVE bmy_13908T0/1-789 GDNNRIRQVV SIYGSCLDVE LQQRAVEYNT LFRKYDHMRA AILEKIPLVE BACU008659/1-787 GDNNRIRQVV SVYGSCLDVE LQQRAVEYNT LFRKYDHMRA AILEKIPLVE 601 650 ENSP00000312442/1-785 RDGPQADEEA KESKEAAQLS EAAPVPTEPQ ASQLLDLLDL LDGASGDVQH ENSBTAP00000050701/1-656 RGGPQVDEEA KESKEVAQLS EAAPLPTETQ ASKLLDLLDL LDGPSENAQH ENSTTRP00000010112/1-787 RGSSQVDEEA KESKETAQLS EAAPVPTEPE ASKLLDLLDL LDGPSGDAQH bmy_13908T0/1-789 RGGSQADEEA KESKETAQLS EAAPVPTEPQ ASKLLDLLDL LDGPSGDAQH BACU008659/1-787 RGGSQADEEA KESKETAQLS EAAPVPTEPQ ASKLLDLLDL LDGPSGDAQH 651 700 ENSP00000312442/1-785 PPHLDPSPGG ALVHLLDLPC VPPPPAPIPD LKVFEREGVQ LNLSFIRPPE ENSBTAP00000050701/1-656 PPPLDPTPGD TLIHLLDLPC APRPPAPIPN LKVFEREGLE LNLSFVRPPG ENSTTRP00000010112/1-787 PPPLDPTPGG ALIHLLNLPC APPPPAPIPH LRVFEREGLQ LDLSFVRPPG bmy_13908T0/1-789 PPPLDPTPGG ALIHLLNLPC APPPP----- --VFEREGLQ LNLSFVRPPG BACU008659/1-787 PPPLDPTPGG ALIHLLNLPC APPPPAPIPN LKVFEREGLQ LNLSFVRPPG 701 750 ENSP00000312442/1-785 NPALLLITIT ATNFSEGDVT HFICQAAVPK SLQLQLQAPS GNTVPARGGL ENSBTAP00000050701/1-656 TPTLLLITVT ATNTSGGDVT HFICQAAVPK SFQLQLQAPS GDTVPAQGGP ENSTTRP00000010112/1-787 TPTLLLITVT ATNTSGGDVT HFICQAAVPK SFQLQLQAPS GDTVPAQGGL bmy_13908T0/1-789 TPTLLLVTVT ATNTSGGDVT HFICQAAVPK SFQLQLQAPS GDTVPAQGGL BACU008659/1-787 TRTLLLITVT ATNTSGGDVT HFICQAAVPK SFQLQLQAPS GDTVPAQGGL 751 800 ENSP00000312442/1-785 PITQLFRILN PNKAPLRLKL RLTYDHFHQS VQEIFEVNNL PVESWQ ENSBTAP00000050701/1-656 PMTQLLRILN PNKAPLRLKL RLTYDHFGQS VQEIFEVNNL PVETWQ ENSTTRP00000010112/1-787 PMTQLLRILN PKKAPLRLKL RLTYNHFGQS VQEIFEVNNL PVETWQ bmy_13908T0/1-789 PMTQLLRILN PKKAPLRLKL RLTYNHFGQS VQEIFEVNNL PVETWQ BACU008659/1-787 PTTQLLRILN PKKAPLRLKL RLTYNHFGQS VQEIFEVNNL PVETWQ