KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:46 2014 Check: 00 .. Name: ENSP00000300403/1-747 Len: 1409 Check: 1799 Weight: 1.00 Name: ENSBTAP00000049473/1-704 Len: 1409 Check: 7090 Weight: 1.00 Name: BACU015588/1-1351 Len: 1409 Check: 8484 Weight: 1.00 Name: bmy_00516T0/1-728 Len: 1409 Check: 2737 Weight: 1.00 Name: ENSTTRP00000007500/1-747 Len: 1409 Check: 6987 Weight: 1.00 // 1 50 ENSP00000300403/1-747 MSQVKSSYSY DAPSDFINFS SLDDEGDTQN IDSWFEEKAN LENKLLGKNG ENSBTAP00000049473/1-704 MSQVTTSYSY DAPTDFINFS SLTDEEDTQH IDSWFDEKAN LENKFTGKDG BACU015588/1-1351 MSQVTTSYSY DAPTDFINFT SLNDEEDTQN IDSWFEEKAN LESKFPGKNG bmy_00516T0/1-728 MSQVTTSYSY DAPTDFINFT SLNDEEDTQN IDSWFEEKAN LENKFPGKSG ENSTTRP00000007500/1-747 MSQVTTSYSY DAPTDFINFT SLNDEEDTQN IDSWFEEKAN LENKFPGKNG 51 100 ENSP00000300403/1-747 TGGLFQGKTP LRKANLQQAI VTPLKPVDNT YYKEAEKENL VEQSIPSNAC ENSBTAP00000049473/1-704 TGGLYQGKTP LRKANLHRD- VTPLRPVDNT YNKQAEKENL VEESIPSNEC BACU015588/1-1351 TGGLFQGKTP LRAANLQQD- VTPLRPVDNT YNKEAEKENL VEESIPTNAC bmy_00516T0/1-728 TGGLFQGKTP LRTANLQQD- VTPLRPVDNT YNKEAEKENL VEESIPTNVC ENSTTRP00000007500/1-747 TGGLFQSKTP LRTANLQQD- VTPLRPVDNT YNKEAEKENL VEESIPTNAC 101 150 ENSP00000300403/1-747 SSLEVEAAIS RKTPAQPQRR SLRLSAQKDL EQKEKHHVKM KAKRCATPVI ENSBTAP00000049473/1-704 PSMKVKETTS RNNPVQPQRR SLRLSAKKNL EQKEKQHVKM KAKRCGTPVI BACU015588/1-1351 SSLKVKGTTS RNILAQPQS- ---------- ---------- ---------- bmy_00516T0/1-728 SSLKVKGTTS RNILAQPQRR SLRLSAQKNL EQKEKHHVQM KAKRCATPVI ENSTTRP00000007500/1-747 SSLKVKGTTS RNILAQPQRR SLRLSAQKNL EQKEKHHVQM KAKRCATPVI 151 200 ENSP00000300403/1-747 IDEILPSKKM KVSNNKKKP- -EEEGSAHQD TAEKNASSPE KAKGRHTVPC ENSBTAP00000049473/1-704 INEFPPSKKM KV-------- ---------- ---------- ---------- BACU015588/1-1351 ---------- --SHNKKKPE EEEEGSVHQD TSEKNESSPE KAKGRHTVPC bmy_00516T0/1-728 VNEIPPSKKM KVSHNKKKPE EEEEGSAHQD TSEKNESSPE KAKGRHTVPC ENSTTRP00000007500/1-747 VNEIPPSKKM RVSHNKKKPE EEEEGSAHQD TSEKNESSPE KAKGRHTVPC 201 250 ENSP00000300403/1-747 MPPAKQKFLK STEEQELEKS MKMQQEVVEM RKKNEEFKKL ALAGIGQPVK ENSBTAP00000049473/1-704 -----QKILK STEEQELEKR MKMQQEVVEM RKRNEEFKKF ALAGAGQPVK BACU015588/1-1351 IPPVRQKILK STEEQELEKR MKMQQEVVEM RKKNEEFKKF ALAGAGLPVK bmy_00516T0/1-728 IPPVRQKILK STEEQELEKR MKMQQEVVEM RKKNEEFKKF ALAGAGLPVK ENSTTRP00000007500/1-747 IPPVRQKILK STEEQELEKR MKMQQEVVEM RKKNEEFKKF ALAGAGLPVK 251 300 ENSP00000300403/1-747 KSVSQVTKSV DFHFRTDERI KQHPKNQEEY KEVNFTSELR KHPSSPARVT ENSBTAP00000049473/1-704 KSVSQVTKAV DFHFRTDERV KQHSKNQEEY KEVNFTSELR KHPPSPARVT BACU015588/1-1351 KSVSQVTKSV DFHFLTDERI KQHPKNQEEY KEVNFTSELR KHPPSPARVT bmy_00516T0/1-728 KSVSQVTKSV DFHFLTDERI KQHPKNQEEY KEVNFTSELR KHPPSPARVT ENSTTRP00000007500/1-747 KSVSQVTKSV DFHFLTDERI KQHPKNQEEY KEVNFTSELR KHPPSPARVT 301 350 ENSP00000300403/1-747 KGCTIVKPFN LSQGKKRTFD ETVSTYVPLA QQVEDFHKRT PNRYHLRSKK ENSBTAP00000049473/1-704 KGCTIVMPFN LSQGKKRTFD ETASTYVPLA QQVEAFHKRT PTRYHLRNRK BACU015588/1-1351 KGCTIVMPFN LSQGKKRTFG ETASTYVPLA QQVEAFHKRT PNRYHLRSKK bmy_00516T0/1-728 KGCTIVMPFN LSQGKKRTFG ETASTYVPLA QQVEAFHKRT PNRYHLRSKK ENSTTRP00000007500/1-747 KGCTIVMPFN LSQGKKRTFG ETASTYVPLA QQVEAFHKRT PNRYHLRSKK 351 400 ENSP00000300403/1-747 DDINLLPSKS SVTKICRDPQ TPVLQTKHRA RAVTCKSTAE LEAEELEKLQ ENSBTAP00000049473/1-704 DDIMPLPSK- SVVRICRDPQ TPVLQTKHRT RPVTCKSAAD LEAEELEKQQ BACU015588/1-1351 DDIILLPSK- SVAKICRDPQ TPVLQTKQRA RPVTCKSAAE QEAEELEKLQ bmy_00516T0/1-728 DDITLLPSK- SVAKICRDPQ TPVLQTKQRA RPVTCKSAAE QEAEELEKLQ ENSTTRP00000007500/1-747 DDITLLPSK- SVAKICRDPQ TPVLQTKQRA RPVTYKSAAE QEAEELEKLQ 401 450 ENSP00000300403/1-747 QYKFKARELD PRILEGGPIL PKKPPVKPPT EPIGFDLEIE KRIQERESKK ENSBTAP00000049473/1-704 QYKFKAQELD PRILEGGPIL PKKPPVKPPT QPVGFDLEIE KRIQERESKK BACU015588/1-1351 QYKFKAQELD PRILEGGPIL PKKPPVKPST QPIGFDLEIE KRIQERESKK bmy_00516T0/1-728 QYKFKAQELD PRILEGGPIL PKKPPVKPST QPIGFDLEIE KRIQERESKK ENSTTRP00000007500/1-747 QYKFKAQELD HRILEGGPIL PKKPPVKPST QPIGFDLETE KRIQERESKK 451 500 ENSP00000300403/1-747 KTEDEHFEFH SRPCPTKILE DVVGVPEKKV LPITVPKSPA FALKNRIRMP ENSBTAP00000049473/1-704 KLEEEHYEFH SRPCPTKILE DVVGVPEKKE LPITVPKSPA FALKNRIRMP BACU015588/1-1351 KLEDEHFEFH SRPCPTKILE DVVGVPEKKV LPITVPKSPA FALKNRIRMP bmy_00516T0/1-728 KLEDEHFEFH SRPCPTKILE D-VGVPEKKV LPITVPKSPA FALKNRIRMP ENSTTRP00000007500/1-747 KLEDEHFEFH SRPCPTKILE DVVGVPEKKV LPITVPKSPA FALKNRIRMP 501 550 ENSP00000300403/1-747 TKEDEEEDEP VVIKAQPVPH YGVPFKPQIP EARTVEICPF SFDSRDKERQ ENSBTAP00000049473/1-704 TKEDEEEEEP VMIRAQPVPY FGMPFKPQIP VGRTVEVCPF SFDSRDKERQ BACU015588/1-1351 TKEDEEEEEP VAIRAQPVPY FGMPFKPQIP VGRTVEICPF SFDSRDKERQ bmy_00516T0/1-728 TKEDEEEEEP VAIRAQPVPY FGMPFKPQIP VGRTVEICPF SFDSRDKERQ ENSTTRP00000007500/1-747 TREDEEEEEP VVIRAQPVPY FGMPFKPQIP VGRTVEICPF SFDSRDKERQ 551 600 ENSP00000300403/1-747 LQKEKKIKEL QKGEVPKFKA LPLPHFDTIN LPEKKVKNVT QIEPFCLETD ENSBTAP00000049473/1-704 LQKEKKIKEL QKGEVPKFKA HPLPHFDTIN LPEKKVKNTT QVEPFCLETD BACU015588/1-1351 LQKEKKIKEL QKGEVPKFKA LPLPHFDTIN LPEKKVKNTT QVEPFCFETD bmy_00516T0/1-728 LQKEKKIKEL QKGEVPKFKA LPLPHFDTIN LPEKKVKNTT QVEPFCFETD ENSTTRP00000007500/1-747 LQKEKKIKEL QKGEVPKFKA LPLPHFDTIN LPEKKVKNTT QVEPFCFETD 601 650 ENSP00000300403/1-747 RRGALKAQTW KHQLEEELRQ QKEAACFKAR PNTVISQEPF VPKKEKKSVA ENSBTAP00000049473/1-704 RRGALKAQTW KHQLDEELKQ QKEAACFKAR PNTVISQEPF VPKREKKSVI BACU015588/1-1351 RRGALKAQTW KHQLEEELKQ QKEAACFKAR PNTVISQEPF VPKREKKSLT bmy_00516T0/1-728 RRGALKAQTW KHQLEEELKQ QKEAACFKAR PNTVISQEPF VPKREKKSLT ENSTTRP00000007500/1-747 RRGALKAQTW KHQLEEELKQ QKEAACFKAR PNTVISQEPF VPKREKKSLT 651 700 ENSP00000300403/1-747 ---------- ---EGLSGSL VQEPFQLATE KRAKERQELE KRMAEVEAQK ENSBTAP00000049473/1-704 ---------- ---EGLSGSL VQEPFQLATE KRAKERQELE KRMAEVEALK BACU015588/1-1351 ---------- ---EGLSGSV VQETFQLATE KRAKERQELE KRMAEVEAQK bmy_00516T0/1-728 GSILCILGGL GQNEGLSGSV VQETFQLATE KRAKERQELE KRMAE----- ENSTTRP00000007500/1-747 ---------- ---EGRSGSL VQETFQLATE KRAKERQELE KRMAEVEAQK 701 750 ENSP00000300403/1-747 AQQLEEARLQ EEEQKKEELA RLRRELVHKA NPIRKYQ--- ---------- ENSBTAP00000049473/1-704 AQQLEEARQQ EEEQQKEELA RLRKELVHKA NPIRRYQ--- ---------- BACU015588/1-1351 AQQLEEARQQ EEEQQKEELA RLRKELVHKA NPVRSDHYVQ AIVDLVTGNK bmy_00516T0/1-728 ---------- ---------- ------VHKA NPVRRYQ--- ---------- ENSTTRP00000007500/1-747 AQQLEEARQQ EEEQQKEELA RLRKELVHKA NPVRRYQ--- ---------- 751 800 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 TKCDLQIPGP PEGPQSDTKR SSFIHFLELE RLELDKQKHT PPYLMATENG bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000300403/1-747 ----GLEIKS SDQ------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ----GVEVKS SDQ------- ---------- ---------- ---------- BACU015588/1-1351 AVELGIQSPS TDKAPKGAAG EGPPAAEKDP GPPDPEMDPN PPNPEKEIGP bmy_00516T0/1-728 ----GVEVKS SDQ------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ----GVEVKS SDQ------- ---------- ---------- ---------- 851 900 ENSP00000300403/1-747 --------PL T--------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 --------PL T--------- ---------- ---------- ---------- BACU015588/1-1351 PDPKEELHPL TLKKDAEALA AEKGGGTLAQ PSTSSQDPKG EGHLGGGPAE bmy_00516T0/1-728 --------PL T--------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 --------PL T--------- ---------- ---------- ---------- 901 950 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 GSAGQPAALP QESATAEVSV KEPEAKQGTP GSQDIGEPKL QKNATEGQAA bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- VPVSP----- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- VPVSP----- BACU015588/1-1351 TKRSPPAFLH SPSCPAAISS PEKPLAEKPP DEASELIFEG VPVTPGPTDS bmy_00516T0/1-728 ---------- ---------- ---------- ---------- VPVSP----- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- VPVSP----- 1001 1050 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 EPAKVAEGEK NLPEGSQKET EEKAPGQAGQ AEVQGDTSRG IEFQAVPSER bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 SEEGQALSPT AREEDCFQIL DDCPPPPAPF PHRIVELRTG NISRQFSLNS bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000300403/1-747 -------KFS TRFHC----- ---------- ---------- ---------- ENSBTAP00000049473/1-704 -------KFS TRFHC----- ---------- ---------- ---------- BACU015588/1-1351 KEALGGGKFG EVCTCTEKAT GLKLAAKVIK KQTPKDKEMV MLEIEVMNQL bmy_00516T0/1-728 -------KFS TRFHC----- ---------- ---------- ---------- ENSTTRP00000007500/1-747 -------KFS TRFHC----- ---------- ---------- ---------- 1151 1200 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 NHRNLIQLYA AIETSHEIVL FMEYIEGGEL FERIVDEDYH LTEVDTMVFV bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 RQICDGILFM HKMRVLHLDL KPENILCVNT TGHLVKIIDF GLARRYNPNK bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 KLKVNFGTPE FLSPEVVNYD QISDKTDMWS LGVITYMLLS GLSPFLGDDD bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 TETLNNVLAG NWYFDEETFE AVSDEAKDFV SNLIVKDQRA RMNAAQCLAH bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000300403/1-747 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049473/1-704 ---------- ---------- ---------- ---------- ---------- BACU015588/1-1351 PWLNNLAEKA KRCNRRLKSQ ILLKKYLMKR RWKKNFIAVS AANRFKKISS bmy_00516T0/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007500/1-747 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000300403/1-747 --------- ENSBTAP00000049473/1-704 --------- BACU015588/1-1351 SGALMALGV bmy_00516T0/1-728 --------- ENSTTRP00000007500/1-747 ---------