KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:44 2014 Check: 00 .. Name: BACU019760/1-678 Len: 857 Check: 299 Weight: 1.00 Name: ENSP00000430344/1-777 Len: 857 Check: 9976 Weight: 1.00 Name: bmy_14189T0/1-840 Len: 857 Check: 9649 Weight: 1.00 Name: ENSBTAP00000049395/1-756 Len: 857 Check: 1826 Weight: 1.00 // 1 50 BACU019760/1-678 ---------- ---------- ---------- ---------- ---------- ENSP00000430344/1-777 ---------- ---------- ---------- ---------- ---------- bmy_14189T0/1-840 VTPLHSSRTR GRPRCRCGRV SRGATLPPRR PSGMDSGRDF LTLHGPGLPS ENSBTAP00000049395/1-756 ---------- ---------- ---------- ---MDSGRDF LTLH------ 51 100 BACU019760/1-678 ---------- ---------- ---------- ---------- ---------- ENSP00000430344/1-777 ---------- ---------M QCLGIRSRSR ----SRELYL QERSLKVAAL bmy_14189T0/1-840 GRHTVPGQAQ RAAGALRNVM ECLGVRHRSR SQSRSRELYL QEQSLEVAAL ENSBTAP00000049395/1-756 ---------- ---------- ---------- ---------- ---------- 101 150 BACU019760/1-678 ---------- ---------- ---------- ---------- ---------- ENSP00000430344/1-777 NGRRLGLQDD EDLQALLKGS QLLKVKSSSW RRERFYKLQE DCKTIWQESR bmy_14189T0/1-840 NEQRLGLQDD KDLQALLKGS QLLKVKSNSW RRERFYKLQE DCKTIWQESR ENSBTAP00000049395/1-756 -----GLQDD KDLQALLKGG QLLKVKSNSW RRERFYKLQE DCKTIWQESR 151 200 BACU019760/1-678 ---------- -SIEDIQEVR MGHRSEGLEK FARDVPEDRC FSIVFKDQRN ENSP00000430344/1-777 KVMRTPESQL FSIEDIQEVR MGHRTEGLEK FARDVPEDRC FSIVFKDQRN bmy_14189T0/1-840 KVMRTPESQL FSIEDIQEVR MGHRSEGLEK FARDVPEDRC FSIVFKDQRN ENSBTAP00000049395/1-756 KVMRTPESQL FSIEDIQEVR MGHRTEGLEK FARDVPENRC FSIVFKDQRN 201 250 BACU019760/1-678 TLDLIAPSPA DAQHWVQGLR KIVHHSGSMD QQQKLRQY-- -PFGGTDKNK ENSP00000430344/1-777 TLDLIAPSPA DAQHWVLGLH KIIHHSGSMD QRQKLQHWIH SCLRKADKNK bmy_14189T0/1-840 TLDLIAPSPA DAQHWVQGLR KIVHHSGSMD QQQKLRHWIH SCLRKADKNK ENSBTAP00000049395/1-756 TLDLIAPSPA DAQHWVQGLG KIIHHSGSMD QQQKLRHWIH SCLRKADKNK 251 300 BACU019760/1-678 DNKMNFKELQ NFLKELNIQV DDSYARKIFR ECDHSQTDSL EDEEIETFYK ENSP00000430344/1-777 DNKMSFKELQ NFLKELNIQV DDSYARKIFR ECDHSQTDSL EDEEIEAFYK bmy_14189T0/1-840 DNKMNFKELQ NFLKELNIQV DDSYARKIFR ECDHSQTDSL EDEEIETFYK ENSBTAP00000049395/1-756 DNKMSFKELQ NFLKELNIQV DDSYARKIFK ECDHSQTDSL EDEEIETFYK 301 350 BACU019760/1-678 ILTHRKEIDL TFKEAAGSGE TLSVDQLVIF LQHQQREEAA GPALALSLIE ENSP00000430344/1-777 MLTQRVEIDR TFAEAAGSGE TLSVDQLVTF LQHQQREEAA GPALALSLIE bmy_14189T0/1-840 ILTHRKEIDL TFKEAAGSGE TLSVDQLMIF LQHQQREEAA GPALALSLIE ENSBTAP00000049395/1-756 ILTQRKEIDR TFEEATGSKE TLSVDQLVTF LQHQQREEEA GPALALSLIE 351 400 BACU019760/1-678 RYEPSETGPH RVGRPLGR-- -------RQP TSRELEGRGC LSQAQGPWSV ENSP00000430344/1-777 RYEPSETA-- KAQRQMTKDG FLMYLLSADG SAFSLAHRRV YQDMGQPLSH bmy_14189T0/1-840 RYEPSETA-- KARRQMTKDG FLMYLLSADG SAFDRAHRRV YQDMGQPLSH ENSBTAP00000049395/1-756 RYEPSETA-- KAQRQMTKDG FLMYLLSADG SAFDLAHRRV YQDMDQPLSH 401 450 BACU019760/1-678 FLCPRKADGR --QGPSLGPS FRGFEDPFPR KWALCKGCRC LELDCWDGPN ENSP00000430344/1-777 YLVSSSHNTY LLEDQLAGPS ---STEAYIR --ALCKGCRC LELDCWDGPN bmy_14189T0/1-840 YLVSSSHNTY LLEDQLTGPS ---STEAYIR --ALCKGCRC LELDCWDGPN ENSBTAP00000049395/1-756 YLVSSSHNTY LLEDQLTGPS ---STEAYIR --ALCKGCRC LELDCWDGPN 451 500 BACU019760/1-678 QEPVIYHGYT FTSKILFCDV LRAIRDYAFK ASPYPVILSL ENHCSLEQQR ENSP00000430344/1-777 QEPIIYHGYT FTSKILFCDV LRAIRDYAFK ASPYPVILSL ENHCTLEQQR bmy_14189T0/1-840 QEPVIYHGYT FTSKILFCDV LRAIRDYAFK ASPYPVILSL ENHCSLEQQR ENSBTAP00000049395/1-756 QEPIIYHGYT FTSKILFCDV VRAIRDYAFK ASPYPVILSL ENHCSLEQQR 501 550 BACU019760/1-678 VMAQHLHTLL GPMLLDRPLD RVTTSLPSPE QLKGKILLKG KKLGGLFLPG ENSP00000430344/1-777 VMARHLHAIL GPMLLNRPLD GVTNSLPSPE QLKGKILLKG KKLGGLLPPG bmy_14189T0/1-840 VMAQHLHTLL GPMLLDRPLD RVTTSLPSPE QLKGKILLKG KKLGGLFLPG ENSBTAP00000049395/1-756 VMARHLRTLL GPMLLDRPLD GVVTSLPSPE QLRGKILLKG KKLGGLFPPG 551 600 BACU019760/1-678 GEGSPEATVV SDEDEAAEME DEAVRRQVQH KSTEDKLTLA KELSDMVIYC ENSP00000430344/1-777 GEGGPEATVV SDEDEAAEME DEAVRSRVQH KPKEDKLRLA QELSDMVIYC bmy_14189T0/1-840 GEGSPEATVV SDEDEAAEME DEA------- ---DDKLTLA KELSDMVIYC ENSBTAP00000049395/1-756 GEGGPEATVV SDEDEAAEME DEAVRSQVQH KSKEDKLRLA KELSDMVIYC 601 650 BACU019760/1-678 KSVHFLGFPS PGTRGQAFYE MASFSENRAL RLLQESGNSF VRHNVSHLSR ENSP00000430344/1-777 KSVHFGGFSS PGTPGQAFYE MASFSENRAL RLLQESGNGF VRHNVGHLSR bmy_14189T0/1-840 KSVHFLGFPS PGTRGQAFYE MASFSENRAL RLLQESGDSF VRHNVSHLSR ENSBTAP00000049395/1-756 KSVHFRGFPS SGTSGQAFYE MSSFSENRAL RLLQESGNSF VRHNVNHLSR 651 700 BACU019760/1-678 IYPAGWRTDS SNYSPVEMWN GGCQIVALNF QTPGPEMDVY QGRFQDNGAC ENSP00000430344/1-777 IYPAGWRTDS SNYSPVEMWN GGCQIVALNF QTPGPEMDVY QGRFQDNGAC bmy_14189T0/1-840 IYPAGWRTDS SNYSPVEMWN GGCQIVALNF QTPGPEMDIY QGRFQDNGAC ENSBTAP00000049395/1-756 IYPAGWRTDS SNYSPVEMWN GGCQIVALNF QTPGSEMDVY QGRFLDNGAC 701 750 BACU019760/1-678 GYVLKPAFLR DPNSTFNSRA LAQGPWWAQK RLNVRVISGQ QLPKVNKNKN ENSP00000430344/1-777 GYVLKPAFLR DPNGTFNPRA LAQGPWWARK RLNIRVISGQ QLPKVNKNKN bmy_14189T0/1-840 GYVLKPAFLR DPNSTFNSCA LAQGPWWARK RLNVRVISGQ QLPKVNKNKN ENSBTAP00000049395/1-756 GYVLKPAFLR DPNSTFNSRA LAHGPWWTPK RLNVRVISGQ QLPKVNKNKN 751 800 BACU019760/1-678 SIVDPKVTVE IHGVGQDVAS HQTAVVTNNG FNPWWDTEFE FEVIVPELAL ENSP00000430344/1-777 SIVDPKVTVE IHGVSRDVAS RQTAVITNNG FNPWWDTEFA FEVVVPDLAL bmy_14189T0/1-840 SIVDPKVTVE IHGVGQDVAS HQTAVVTNNG FNPWWDTEFE FEVIVPELAL ENSBTAP00000049395/1-756 SIVDPKVTVE IHGVSRDVAS RQTAVVTNNG FNPWWDTELE FEVAVPELAL 801 850 BACU019760/1-678 VRFVVEDYDA SSKNDFIGQS TIPLNSLKQG YRHIHLLSKN GDQHPSATLF ENSP00000430344/1-777 IRFLVEDYDA SSKNDFIGQS TIPLNSLKQG YRHVHLMSKN GDQHPSATLF bmy_14189T0/1-840 VRFVVEDYDA ASKNDFIGQS TIPLNSLKQG YRHIHLLSKN GDQHPSATLF ENSBTAP00000049395/1-756 VRFVVEDYDA SSKNDFIGQS TIPLKSLKQG YRHIHLLSKN GDQHPSATLF 851 900 BACU019760/1-678 VKV---- ENSP00000430344/1-777 VKISLQD bmy_14189T0/1-840 VKVGLQD ENSBTAP00000049395/1-756 VKVALQD