KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:58:28 2014 Check: 00 .. Name: ENSBTAP00000047867/1-343 Len: 424 Check: 1517 Weight: 1.00 Name: ENSP00000416996/1-384 Len: 424 Check: 9397 Weight: 1.00 Name: bmy_03309T0/1-420 Len: 424 Check: 6966 Weight: 1.00 Name: ENSTTRP00000001620/1-386 Len: 424 Check: 9203 Weight: 1.00 // 1 50 ENSBTAP00000047867/1-343 ---------- ---------- ---------- ----MATTAS PLPPTTKVAS ENSP00000416996/1-384 ---------- ---------- ---------- ----MAATAS PQPLATEDAD bmy_03309T0/1-420 MPLRCQPCAG ELQRLGIPSL AEEASDPQKM CPPAMAATTS PLPPTAKVAS ENSTTRP00000001620/1-386 ---------- ---------- ---------- ----MAATAS PPPPSTKVAS 51 100 ENSBTAP00000047867/1-343 SENSSSFYDY EYYLEDMIFM LCRKDEVLSF GRVFLPVFYS LIFVLGLVGN ENSP00000416996/1-384 SEN-SSFYYY DY-LDEVAFM LCRKDAVVSF GKVFLPVFYS LIFVLGLSGN bmy_03309T0/1-420 SENSSSFYDY EYYLDDVAFM LCRKDEVLSF GRVFLPLFYG LIFVLGLGGN ENSTTRP00000001620/1-386 SENSSSFYDY EYFLGNVAFM LCRKDEVLSF GRVFLPLFYG LIFVLGLSGN 101 150 ENSBTAP00000047867/1-343 LLLLAVLLRF VPRRRMTETY LLNLAISNLL FVVTLPFWGI SVAWHWVFGS ENSP00000416996/1-384 LLLLMVLLRY VPRRRMVEIY LLNLAISNLL FLVTLPFWGI SVAWHWVFGS bmy_03309T0/1-420 LLLLVVLLRY VPRRRMTEIY LLNLAISNLL FVVTLPFWGI SVARHWVFGS ENSTTRP00000001620/1-386 LLLLVVLLRY VPRRRMTEIY LLNLAISNLL FLVTLPFWGI SVAWHWVFGS 151 200 ENSBTAP00000047867/1-343 VLCKVVSTLY TVNFYSGIFF ISCMSLDKYL EIVCARPYHR LRTRAKSLLL ENSP00000416996/1-384 FLCKMVSTLY TINFYSGIFF ISCMSLDKYL EIVHAQPYHR LRTRAKSLLL bmy_03309T0/1-420 FLCKVVSTLY TVNFYSGIFF ISCMSLDKYL EIACAQPHHR LRTRARSLLL ENSTTRP00000001620/1-386 FLCKVVSTLY TINFYSGIFF ISCMSLDKYL EIVHAQPHHR LRTRAKSLLL 201 250 ENSBTAP00000047867/1-343 AASVWAMALA VSIPDMVFVR THENSPGVWE CYADFGGHGT IWKLFLRFQQ ENSP00000416996/1-384 ATIVWAVSLA VSIPDMVFVQ THENPKGVWN CHADFGGHGT IWKLFLRFQQ bmy_03309T0/1-420 AAVVWAVALA ASVPDMVFVR THENAPGVWD CFADFGGHGT IWKLFLRFQQ ENSTTRP00000001620/1-386 AAAVWAVALA VSIPDMVFVR TQENAPGVWD CFADFGGHGT IWKLFLRFQQ 251 300 ENSBTAP00000047867/1-343 NLLGFLLPLL AMIFFYSRIG SVLVSLRPPG QRRPEDGRSS GGGLLCAV-- ENSP00000416996/1-384 NLLGFLLPLL AMIFFYSRIG CVLVRLRPAG QGR---ALKI AAALVVAFFV bmy_03309T0/1-420 NLLGFLLPLL AMIFFYSRIG SVLARLRPPG QSR---ALRM AIGLVVAFFV ENSTTRP00000001620/1-386 NLLGFLLPLL AMIFFYSRIG SVLARLRPPG QSR---ALRM AIGLVVAFFV 301 350 ENSBTAP00000047867/1-343 ---------- ---------- --VPVQSHLV PALAAGPASL WGLQGQPAPG ENSP00000416996/1-384 LWFPYNLTLF LHTLLDLQVF GNCEVSQHLD YALQVTESIA F-LHCCFSPI bmy_03309T0/1-420 LWFPYNVTLF LHSLLDLQVF GDCTVSQRLD YALQVTESIA F-LHCCFTPV ENSTTRP00000001620/1-386 LWFPYNVTLF LHSLLDLQVF GDCKVSQHLD YALQVTESIA F-LHCCFTPV 351 400 ENSBTAP00000047867/1-343 LCAAGDGEHR ------LPAL LLHPRPLRLL QPPLPPVPQG FPGHCAQKAT ENSP00000416996/1-384 LYAFSSHRFR QYLKAFLAAV LGWHLAPGTA QASLSSCSES SILTAQEEMT bmy_03309T0/1-420 LYAFSSRRFR QYLKAFLATV LRRHQAPYLA QAPPSSYSES SRLSGQEDIT ENSTTRP00000001620/1-386 LYAFSSRRFR QYLKAFLATV LRRHQAPYLA QTPPSSYSES SRLSGQEDIT 401 450 ENSBTAP00000047867/1-343 G--------- --------PA VKLF ENSP00000416996/1-384 GMNDLGERQS ENYPNKEDVG NKSA bmy_03309T0/1-420 GMNDLGERQA EDSPNKGDAG KNSA ENSTTRP00000001620/1-386 GMNDLGERQA EDSPNKGDTR KNSA