KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:43 2014 Check: 00 .. Name: ENSTTRP00000009188/1-1183 Len: 1304 Check: 2391 Weight: 1.00 Name: ENSP00000338185/1-1216 Len: 1304 Check: 2667 Weight: 1.00 Name: ENSBTAP00000046644/1-1216 Len: 1304 Check: 3059 Weight: 1.00 Name: bmy_14154T0/1-1189 Len: 1304 Check: 9608 Weight: 1.00 Name: BACU000637/1-1115 Len: 1304 Check: 9446 Weight: 1.00 // 1 50 ENSTTRP00000009188/1-1183 ---------- ---------- ---------- ---DSTIVTP IILRTDPQGF ENSP00000338185/1-1216 MAGAQPGVHA LQLKPVCVSD SLKKGTKFVK WDDDSTIVTP IILRTDPQGF ENSBTAP00000046644/1-1216 MAGAQPGVHA LQLKPVCVSD SLKKGTKFVK WEDDSTVVTP IILRTDPQGF bmy_14154T0/1-1189 ---------- ---------- ---------- ---------- ---------- BACU000637/1-1115 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009188/1-1183 FFYWTDQSKE TELLDLSLVK DARCGKHAKA PKDPKLRELL DVGNIGRLEH ENSP00000338185/1-1216 FFYWTDQNKE TELLDLSLVK DARCGRHAKA PKDPKLRELL DVGNIGRLEQ ENSBTAP00000046644/1-1216 FFYWTDQNKE TELLDLSLVK DARCGKHAKA PKDPKLRELL DVGNIGRLEH bmy_14154T0/1-1189 ---------- ---------- ---------M PEDPKLRELL DVGNIGRLEH BACU000637/1-1115 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009188/1-1183 RMITVVYGPD LVNISHLNLV AFQEEVAKEW TNEVFSLATN LLAQNMSRDA ENSP00000338185/1-1216 RMITVVYGPD LVNISHLNLV AFQEEVAKEW TNEVFSLATN LLAQNMSRDA ENSBTAP00000046644/1-1216 RMITVVYGPD LVNISHLNLV AFQEEVAKEW TNEVFSLATN LLAQNMSRDA bmy_14154T0/1-1189 RMITVVYGPD LVNISHLNLV AFQEEVAKEW TNEVFSLATN LLAQNMSRDA BACU000637/1-1115 -MITVVYGPD LVNISHLNLV AFQEEVAKEW TNEVFSLATN LLAQNMSRDA 151 200 ENSTTRP00000009188/1-1183 FLEKAYTKLK LQVTPEGRIP LKNIYRLFSA DRKRVETALE ACSLPSSRXX ENSP00000338185/1-1216 FLEKAYTKLK LQVTPEGRIP LKNIYRLFSA DRKRVETALE ACSLPSSRND ENSBTAP00000046644/1-1216 FLEKAYTKLK LQVTPEGRIP LKNIYRLFSA DRKRVETALE ACSLPSSRND bmy_14154T0/1-1189 FLQKA----- ---------- ---IYRLFSA DRKRVETALE ACSLPSSRND BACU000637/1-1115 FLQKAYTKLK LQVTPEGRIP LKNIYRLFSA DRKRVETALE ACSLPSSRND 201 250 ENSTTRP00000009188/1-1183 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000338185/1-1216 SIPQEDFTPE VYRVFLNNLC PRPEIDNIFS EFGAKSKPYL TVDQMMDFIN ENSBTAP00000046644/1-1216 SIPQEDFTPE VYRVFLNNLC PRPEIDNIFS EFGAKSKPYL TVDQMMDFIN bmy_14154T0/1-1189 SIPQEDFTPE VYRVFLNNLC PRPEIDNIFS EFGAKSKPYL TVDQMMDFIN BACU000637/1-1115 SIPQEDFTPE VYRVFLNNLC PRPEIDNIFS EFGAKSKPYL TVDQMMDFIN 251 300 ENSTTRP00000009188/1-1183 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQI SVDGFMRYLS ENSP00000338185/1-1216 LKQRDPRLNE ILYPPLKQEQ VQVLIEKYEP NNSLARKGQI SVDGFMRYLS ENSBTAP00000046644/1-1216 LKQRDPRLNE ILYPPLKQEQ VQVLIEKYEP NNSLAKKGQI SVDGFMRYLS bmy_14154T0/1-1189 LKQRDPRLNE ILYPPLKQEQ VQVLIEKYEP NNSLARKGQI SVDGFMRYLS BACU000637/1-1115 LKQRDPRLNE ILYPPLKQEQ VQVLIEKYEP NNSLARKGQI SVDGFMRYLS 301 350 ENSTTRP00000009188/1-1183 GEENGVVPPE KLDLNEDMSQ PLTHYFINSS HNTYLTAGQL AGNSSVEMYR ENSP00000338185/1-1216 GEENGVVSPE KLDLNEDMSQ PLSHYFINSS HNTYLTAGQL AGNSSVEMYR ENSBTAP00000046644/1-1216 GEENGVVSPE KLDLNEDMSQ PLSHYFINSS HNTYLTAGQL AGNSSVEMYR bmy_14154T0/1-1189 GEENGVVPPE KLDLNEDMSQ PLSHYFINSS HNTYLTAGQL AGNSSVEMYR BACU000637/1-1115 GEENGVVPPE KLDLNEDMSQ PLSHYFINSS HNTYLTAGQL AGNSSVEMYR 351 400 ENSTTRP00000009188/1-1183 QVLLSGCRCV ELDCWKGRTA EEEPVITHGF TMTTEISFKE VIEAIAECAF ENSP00000338185/1-1216 QVLLSGCRCV ELDCWKGRTA EEEPVITHGF TMTTEISFKE VIEAIAECAF ENSBTAP00000046644/1-1216 QVLLSGCRCV ELDCWKGRTA EEEPVITHGF TMTTEISFKE VIEAIAECAF bmy_14154T0/1-1189 QVLLSGCRCV ELDCWKGRTA EEEPVITHGF TMTTEISFKE VIEAIAECAF BACU000637/1-1115 QVLLSGCRCV ELDCWKGRTA EEEPVITHGF TMTTEISFKE VIEAIAECAF 401 450 ENSTTRP00000009188/1-1183 KTSPFPILLS FENHVDSPKQ QAKMAEYCRL IFGDALLMEP LEKYPLESGV ENSP00000338185/1-1216 KTSPFPILLS FENHVDSPKQ QAKMAEYCRL IFGDALLMEP LEKYPLESGV ENSBTAP00000046644/1-1216 KTSPFPILLS FENHVDSPKQ QAKMAEYCRL IFGDALLMEP LDKYPLESGV bmy_14154T0/1-1189 KTSPFPILLS FENHVDSPKQ QAKMAEYCRL IFGDALLMEP LEKYPLESGV BACU000637/1-1115 KTSPFPILLS FENHVDSPKQ QAKMAEYCRL IFGDALLMEP LEKYPLESGV 451 500 ENSTTRP00000009188/1-1183 PLPSPLDLMY KILVKNKKKS HKSSEGSGKK KLSEQTSNTY SDSSSVFEPS ENSP00000338185/1-1216 PLPSPMDLMY KILVKNKKKS HKSSEGSGKK KLSEQASNTY SDSSSMFEPS ENSBTAP00000046644/1-1216 PLPSPMDLMY KILVKNKKKS HKSSEGSGKK KLSEQASNTY SDSSSVFEPS bmy_14154T0/1-1189 PLPSPLDLMY KILVKNKKKS HKSSEGSGKK KLSEQTSNTY SDSSSVFEPS BACU000637/1-1115 PLPSPLDLMY KILVKNKKKS HKLSEGSGKK KLSEQTSNTY SDSSSVFEPS 501 550 ENSTTRP00000009188/1-1183 SPGAGEADTE SDDDDDEDDC KKSSMDEGTA GSEAMATEEM SNLVXXXXXX ENSP00000338185/1-1216 SPGAGEADTE SDDDDDDDDC KKSSMDEGTA GSEAMATEEM SNLVNYIQPV ENSBTAP00000046644/1-1216 SPGAGEADTE SDDDDDDDDC KKSSMDEGTA GSEAMATEEM SNLVNYIQPV bmy_14154T0/1-1189 SPGAGEADTE SDDDDDEDDC KKSSMDEGTA GSEAMATEEM SNLVNYIQPV BACU000637/1-1115 SPGAGEADTE SDDDDDEDDC KKSSMDEGTA GSEAMATEEM SNLVNYIQPV 551 600 ENSTTRP00000009188/1-1183 XXXXXXXXXX RNRSFEMSSF VETKGLEQLT KSPVEFVEYN KMQLSRIYPK ENSP00000338185/1-1216 KFESFEISKK RNKSFEMSSF VETKGLEQLT KSPVEFVEYN KMQLSRIYPK ENSBTAP00000046644/1-1216 KFESFEISKK RNRSFEMSSF VETKGLEQLT KSPVEFVEYN KMQLSRIYPK bmy_14154T0/1-1189 KFESFEISKK RNRSFEMSSF VETKGLEQLT KSPVEFVEYN KMQLSRIYPK BACU000637/1-1115 KFESFEISKK RNRSFEMSSF VETKGLEQLT KSPVEFVEYN KMQLSRIYPK 601 650 ENSTTRP00000009188/1-1183 GTRVDSSNYM PQLFWNAGCQ MVALNFQTVD LAMQINMGMY EYNGKSGYRL ENSP00000338185/1-1216 GTRVDSSNYM PQLFWNAGCQ MVALNFQTMD LAMQINMGMY EYNGKSGYRL ENSBTAP00000046644/1-1216 GTRVDSSNYM PQLFWNAGCQ MVALNFQTVD LAMQINMGMY EYNGKSGYRL bmy_14154T0/1-1189 GTRVDSSNYM PQLFWNAGCQ MVALNFQTVD LAMQINMGMY EYNGKSGYRL BACU000637/1-1115 GTRVDSSNYM PQLFWNAGCQ MVALNFQTVD LAMQINMGMY EYNGKSGYRL 651 700 ENSTTRP00000009188/1-1183 KPEFMRRPDK HFDPFTEGIV DGIVANTLSV KIISGQFLSD KKVGTYVEVD ENSP00000338185/1-1216 KPEFMRRPDK HFDPFTEGIV DGIVANTLSV KIISGQFLSD KKVGTYVEVD ENSBTAP00000046644/1-1216 KPEFMRRPDK HFDPFTEGIV DGIVANTLSV KIISGQFLSD KKVGTYVEVD bmy_14154T0/1-1189 KPEFMRRPDK HFDPFTEGIV DGIVANTLSV KIISGQFLSD KKVGTYVEVD BACU000637/1-1115 KPEFMRRPDK HFDPFTEGIV DGIVANTLSV KIISGQFLSD KKVGTYVEVD 701 750 ENSTTRP00000009188/1-1183 MFGLPVDTRR KAFKTKTSQG NAVNPVWEEE PIVFKKVVLP SLACLRIAVY ENSP00000338185/1-1216 MFGLPVDTRR KAFKTKTSQG NAVNPVWEEE PIVFKKVVLP TLACLRIAVY ENSBTAP00000046644/1-1216 MFGLPVDTRR KAFKTKTSQG NAVNPIWEEE PIVFKKVVLP SLACLRIAVY bmy_14154T0/1-1189 MFGLPVDTRR KAFKTKTSQG NAVNPVWEEE PIVFKKVVLP SLACLRIAVY BACU000637/1-1115 MFGLPVDTRR KAFKTKTSQG NAVNPVWEEE PIVFKKVVLP SLACLRIAVY 751 800 ENSTTRP00000009188/1-1183 EEGGKFIGHR ILPVQAIRPG YHYICLRNER NQPLMLPALF VYIEVKDYVP ENSP00000338185/1-1216 EEGGKFIGHR ILPVQAIRPG YHYICLRNER NQPLTLPAVF VYIEVKDYVP ENSBTAP00000046644/1-1216 EEGGKFIGHR ILPVQAIRPG YHYICLRNER NQPLMLPALF VYIEVKDYVP bmy_14154T0/1-1189 EEGGKFIGHR ILPVQAIRPG YHYICLRNER NQPLMLPALF VYIEVKDYVP BACU000637/1-1115 EEGGKFIGHR ILPVQAIRPG YHYICLRNER NQPLMLPALF VYIEVKDYVP 801 850 ENSTTRP00000009188/1-1183 DTYADVIEAL SNPIRYVNLM EQRAKQLAAL TLEDEEEVKK E--------- ENSP00000338185/1-1216 DTYADVIEAL SNPIRYVNLM EQRAKQLAAL TLEDEEEVKK E--------- ENSBTAP00000046644/1-1216 DTYADVIEAL SNPIRYVNLM EQRAKQLAAL TLEDEEEVKK E--------- bmy_14154T0/1-1189 DTYADVIEAL SNPIRYVNLM EQRAKQLAAL TLEDEEEVKK ECNAKEFQAY BACU000637/1-1115 DTYADVIEAL SNPIRYVNLM EQRAKQLAAL TLEDEEEVKK E--------- 851 900 ENSTTRP00000009188/1-1183 ---------- ---------- ---------- ---------- ---------A ENSP00000338185/1-1216 ---------- ---------- ---------- ---------- ---------A ENSBTAP00000046644/1-1216 ---------- ---------- ---------- ---------- ---------A bmy_14154T0/1-1189 FIQAHKKEYL DKDWGESKSQ VLTSTDALQQ SKLFENGLYI YTFLYLRSNA BACU000637/1-1115 ---------- ---------- ---------- ---------- ---------A 901 950 ENSTTRP00000009188/1-1183 DPGETQSEAP SEARTTPAEN GMNHTTSLTP KPPSQALHSQ PAPGSVKAPA ENSP00000338185/1-1216 DPGETPSEAP SEARTTPAEN GVNHTTTLTP KPPSQALHSQ PAPGSVKAPA ENSBTAP00000046644/1-1216 DPGETPSEAP SEARPTPAEN GVNHTTSLTP KPPSQALHSQ PAPGSVKAPA bmy_14154T0/1-1189 DPGETQSEAP SEARTTPAEN GMNHTTSLTP KPPSQALHNQ PAP------- BACU000637/1-1115 DPGETQSEAP SEARTTPAEN GMNHTTSLTP KPPSQALHNQ PAPGSVKAPA 951 1000 ENSTTRP00000009188/1-1183 KTEDLIQSVL TEVEAQTIEE LKQQKSFVKL QKKHYKEMKD LVKRHHKKTT ENSP00000338185/1-1216 KTEDLIQSVL TEVEAQTIEE LKQQKSFVKL QKKHYKEMKD LVKRHHKKTT ENSBTAP00000046644/1-1216 KTEDLIQSVL TEVEAQTIEE LKQQKSFVKL QKKHYKEMKD LVKRHHKKTT bmy_14154T0/1-1189 ---------- -EVEAQTIEE LKQQKSFVKL QKKHYKEMKD LVKRHHKKTT BACU000637/1-1115 KTEDLIQSVL TEVEAQTIEE LKQQKSFVKL QKKHYKEMKD LVKRHHKKTT 1001 1050 ENSTTRP00000009188/1-1183 DLIKEHTTKY NEIQNDYLRR RAALEKTAKK DSKKKSEPSS PDHGSSTIEQ ENSP00000338185/1-1216 DLIKEHTTKY NEIQNDYLRR RAALEKSAKK DSKKKSEPSS PDHGSSTIEQ ENSBTAP00000046644/1-1216 DLIKEHTTKY NEIQNDYLRR RAALEKTAKK DNKKKSEPSS PDHVSSTIEQ bmy_14154T0/1-1189 DLIKEHTTKY NEIQNDYLRR RAALEKTAKK DSKKKSEPSS PDHGSSTIEQ BACU000637/1-1115 DLIKEHTTKY NEIQNDYLRR RAALEKTAKK DSKKKSEPSS PDHGSSTIEQ 1051 1100 ENSTTRP00000009188/1-1183 DLAALDAEMT QKLIDLKDKQ QQQLLNLRQE QYYSEKYQKR EHIKLLIQKL ENSP00000338185/1-1216 DLAALDAEMT QKLIDLKDKQ QQQLLNLRQE QYYSEKYQKR EHIKLLIQKL ENSBTAP00000046644/1-1216 DLAALDAEMT QKLVDLKDKQ QQQLLNLRQE QYYSEKYQKR EHIKLLIQKL bmy_14154T0/1-1189 DLAALDAEMT QKSIDLKDKQ QQQLLNLRQE QYYSEKYQKR EHIKLLIQKL BACU000637/1-1115 DLAALDAEMT QKSTDLKDKQ QQQLLNLRQE QYYSEKYQKR EHIKLLIQKL 1101 1150 ENSTTRP00000009188/1-1183 TDVAEECQNN QLKKLKEICE KEKKELKKKM DKKRQEKITE AKSKDKSQME ENSP00000338185/1-1216 TDVAEECQNN QLKKLKEICE KEKKELKKKM DKKRQEKITE AKSKDKSQME ENSBTAP00000046644/1-1216 TDVAEECQNN QLKKLKEICE KEKKELKKKM DKKRQEKITE AKSKDKSQME bmy_14154T0/1-1189 TDVAEECQNN QLKKLKEICE KEKKELKKKM DKKRQEKITE AKSKDKSQME BACU000637/1-1115 TDVAEECQNN QLKKLKEICE KEKKELKKKM DKKRQEKITE AKSKDKSQME 1151 1200 ENSTTRP00000009188/1-1183 EEKTEMIRSY IQEVVQYIKR LEEAQSKRQE KLVEKHKEIR QQILDEKPK- ENSP00000338185/1-1216 EEKTEMIRSY IQEVVQYIKR LEEAQSKRQE KLVEKHKEIR QQILDEKPK- ENSBTAP00000046644/1-1216 EEKTEMIRSY IQEVVQYIKR LEEAQSKRQE KLVEKHKEIR QQILDEKPK- bmy_14154T0/1-1189 EEKTEMIRSY IQEVVQYIKR LEEAQSKRQE KLVEKHKEIR QQILDEKPKL BACU000637/1-1115 EEKTEMIRSY IQEVVQYIKR LEEAQSKRQE KLVEKHKEIR QQILDEKPK- 1201 1250 ENSTTRP00000009188/1-1183 ---------- ---------- ---------L QVELEQEYQD KFKRLPLEIL ENSP00000338185/1-1216 ---------- ---------- ---------L QVELEQEYQD KFKRLPLEIL ENSBTAP00000046644/1-1216 ---------- ---------- ---------L QVELEQEYQD KFKRLPLEIL bmy_14154T0/1-1189 LYSTYSGTDV TAVSQVVEEI LTHAGPQLAL QVELEQEYQD KFKRLPLEIL BACU000637/1-1115 ---------- ---------- ---------L QVELEQEYQD KFKRLPLEIL 1251 1300 ENSTTRP00000009188/1-1183 EFVQEAMKGK ISEDSNHSSV PPLLTSDPGK LNHKPPSSEK LEGENPGKEF ENSP00000338185/1-1216 EFVQEAMKGK ISEDSNHGSA PLSLSSDPGK VNHKTPSSEE LGGDIPGKEF ENSBTAP00000046644/1-1216 EFVQEAMKGK ISEDSNHSSA PPLMTSDSGK LNQKPPSSEE LEGENPGKEF bmy_14154T0/1-1189 EFVQEAMKGK ISEDSNHSSA PPLLTSDPGK LNHKPPSSEK LEGENPGKEF BACU000637/1-1115 EFVQEAMKGK ISEDSNHSSA PPLLTSDPGK LNHKPPSSEK LEGENPGKEF 1301 1350 ENSTTRP00000009188/1-1183 DTPL ENSP00000338185/1-1216 DTPL ENSBTAP00000046644/1-1216 DTPL bmy_14154T0/1-1189 DTPL BACU000637/1-1115 DNPL