KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:24 2014 Check: 00 .. Name: ENSBTAP00000044734/1-501 Len: 773 Check: 9745 Weight: 1.00 Name: ENSP00000405423/1-504 Len: 773 Check: 8374 Weight: 1.00 Name: ENSTTRP00000009232/1-463 Len: 773 Check: 2264 Weight: 1.00 Name: bmy_03306T0/1-769 Len: 773 Check: 204 Weight: 1.00 Name: BACU019611/1-460 Len: 773 Check: 6884 Weight: 1.00 // 1 50 ENSBTAP00000044734/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000405423/1-504 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009232/1-463 ---------- ---------- ---------- ---------- ---------- bmy_03306T0/1-769 ALLHFAQLRS RKATSSLPSS SPTPPAVTTH RSKPRGGGDP RAGHTAPGPQ BACU019611/1-460 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000044734/1-501 ---------- ---------- ---------- -----MGIKT ALPAAELGLY ENSP00000405423/1-504 ---------- ---------- ---------- -----MGIKT ALPAAELGLY ENSTTRP00000009232/1-463 ---------- ---------- ---------- -----MGVKT ALPAAELGLY bmy_03306T0/1-769 SPAGRTVARS DAGPQSPEVG SVPGSLTASS SPIQAMGIKT ALPAAELGLY BACU019611/1-460 ---------- ---------- ---------- -----MGIKT ALPAAELGLY 101 150 ENSBTAP00000044734/1-501 SLVLSGALAY AGRGLFEASQ DGAHRKAFRE SVRPGWEYIG RKM------- ENSP00000405423/1-504 SLVLSGALAY AGRGLLEASQ DGAHRKAFRE SVRPGWEYIG RKM------- ENSTTRP00000009232/1-463 SLVLSGALGY AGRGLFEASQ GGARRKAFRE SVRPGWEYIG RKM------- bmy_03306T0/1-769 SLVLSGALAY AARGLLEASQ GGAHRKAFRE SVRPGWEYIG RKMETNRDGL BACU019611/1-460 SLVLSGALAY AGRGLLEASQ GGAHRRAFRE SVRPGWEYIG RKM------- 151 200 ENSBTAP00000044734/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000405423/1-504 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009232/1-463 ---------- ---------- ---------- ---------- ---------- bmy_03306T0/1-769 PQGLQHHPPQ EQRNNGGMSG NVLDRGGAWS SRAAHVVPLI PLYLPSRYFP BACU019611/1-460 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000044734/1-501 ---------- ---------- ---------- ---------- ---------D ENSP00000405423/1-504 ---------- ---------- ---------- ---------- ---------D ENSTTRP00000009232/1-463 ---------- ---------- ---------- ---------- ---------D bmy_03306T0/1-769 QRGRQGPQPL LSSNAQEDSG GREGAETLTS PSASPLCPHP TLTCLGLPQD BACU019611/1-460 ---------- ---------- ---------- ---------- ---------D 251 300 ENSBTAP00000044734/1-501 VADFEWVMWF TSFRNVIIFA LSGHQLTLSL SHFPCPQLRS WMYAVYGALA ENSP00000405423/1-504 VADFEWVMWF TSFRNVIIFA LSGHVLFAKL CTMVAPKLRS WMYAVYGALA ENSTTRP00000009232/1-463 VADFEWVMWF TSFRNAIFLA LSGHVLFAKL CTMVAPQLRS WMYAVYGALA bmy_03306T0/1-769 VADFEWVMWF TSFRNAIIFA LSGHVLFAKL CTMVAPQLRS WMYAAYGALA BACU019611/1-460 VADFEWVMWF TSFRNAIIFA LSGHVLFAKL CTMVAPQLRS WMYAAYGALA 301 350 ENSBTAP00000044734/1-501 VVGTMGPWYL LLLLGHCVGL YVVSLFGQPW LCLGVGLASL ASFKLDPLIS ENSP00000405423/1-504 VMGTMGPWYL LLLLGHCVGL YVASLLGQPW LCLGLGLASL ASFKMDPLIS ENSTTRP00000009232/1-463 VVGTMGPWYL LLLLGHCVGL YVVSLLHQPW LCLGLGLASL ASFKLDPLIS bmy_03306T0/1-769 VVGTMGPWYL LLLLGHCVGL YVVSLLRQPW LCLGLGLASL ASFKLDPLIS BACU019611/1-460 VVGTMGPWYL LLLLGHCVGL YVVSLLRQPW LCLGLGLASL ASFKLDPLIS 351 400 ENSBTAP00000044734/1-501 WQSGFVTGTF DLQEVLFHGG CGFTVLRCTS FALESCAHPD RRYSLADLLK ENSP00000405423/1-504 WQSGFVTGTF DLQEVLFHGG SSFTVLRCTS FALESCAHPD RHYSLADLLK ENSTTRP00000009232/1-463 WQSGFVTGTF DLQEVLFHGG SGFTVLRCTS FALESCAHPD RRYSLADLLK bmy_03306T0/1-769 WQSGFVTGTF DLQEVLFHGG SGFTVLRCTS FALESCTHPD RRYSLADLLK BACU019611/1-460 WQSGFVTGTF DLQEVLFHGG SGFTVLRCTS FALESCAHPD RRYSLADLLK 401 450 ENSBTAP00000044734/1-501 YNFYLPFFFF GPIMTFDRFH A------QVR RHEPLAGARG AG----LHTR ENSP00000405423/1-504 YNFYLPFFFF GPIMTFDRFH A------QVS QVEPV---RR EGELWHIRAQ ENSTTRP00000009232/1-463 YNFYLPFFFF GPIMTFDRFH A------QVS QVEPV---RR EGELWRIRAQ bmy_03306T0/1-769 YNFYLPFFFF GPIMTFDRFH AQTLAVPQVS QVEPV---RR EGELWRIRAQ BACU019611/1-460 YNFYLPFFFF GPIMTFDRFH A------QVS QVEPA---RR EGELWRIRAQ 451 500 ENSBTAP00000044734/1-501 GSLDEAASPQ ELVIFRREGL GSV-TTLDLG SNDPLSAAG- ---------- ENSP00000405423/1-504 AGLSVVAIMA VDIFFHFFYI LTIPSDLKFA NRLPDSALAG ---------- ENSTTRP00000009232/1-463 AGLSVVAIVA VDIFFHFFYI LTIPNDLKFA SRLPDSALAG ---------- bmy_03306T0/1-769 AGLSVVAIVA VDIFFHFFYI LTIPSDLKFA SRLPDSALGG CAPGPEQGRG BACU019611/1-460 AGLSVVAIVA VDIFFHFFYI LTIPSDLKFA SRLPDSA--- ---------- 501 550 ENSBTAP00000044734/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000405423/1-504 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009232/1-463 ---------- ---------- ---------- ---------- ---------- bmy_03306T0/1-769 RGRHFRRTDP LRPNGGGVTA GEAGAPGDST YRRARGGVGD GGKVGVTSPG BACU019611/1-460 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000044734/1-501 ---------L AYSNLVYDWV KAAVLFGVVN TVARLDHLDP PQPPKCITAL ENSP00000405423/1-504 ---------L AYSNLVYDWV KAAVLFGVVN TVACLDHLDP PQPPKCITAL ENSTTRP00000009232/1-463 ---------L AYSNLVYDWV KAAVLFGVVN TVARLDHLDP PRPPKCITAL bmy_03306T0/1-769 RDDPLSPAGL AYSNLVYDWV KAAVLFGVVN TVARLDHLDP PRPPKCITAL BACU019611/1-460 ---------L AYSNLVYDWV KAAVLFGVVN TVARLDHLDP PRPPKCITAL 601 650 ENSBTAP00000044734/1-501 YVFAETHFDR GINDWLCKYV YNYIGGEHSA VIPELGATIA TFAITTLWLG ENSP00000405423/1-504 YVFAETHFDR GINDWLCKYV YNHIGGEHSA VIPELAATVA TFAITTLWLG ENSTTRP00000009232/1-463 YVFSETHFDR GINDWLCRYV YDHVGGEHSE VIPELVATVA TFAVTTLWLG bmy_03306T0/1-769 YVFAETHFDR GINDWLCRYV YDHIGGEHSA VIPELGATVA TFAITTLWLG BACU019611/1-460 YVFAETHFDR GINDWLCRYV YDHVGGEHSA VIPELGATVA TFAITTLWLG 651 700 ENSBTAP00000044734/1-501 PCDVVYLWSC LNCFGLNFEL WVQKLAELEP LSQIETSLSE QMSRRVRAVF ENSP00000405423/1-504 PCDIVYLWSF LNCFGLNFEL WMQKLAEWGP LARIEASLSV QMSRRVRALF ENSTTRP00000009232/1-463 PCDTVYLWSC LNCFGLNFEL WVQKLAEWGP LARIEASLSE QMSRRVRAIF bmy_03306T0/1-769 PCDTVYLWSC LNCFGLNFEL WVQKLAEWGP LARIEASLSE QMSRRVRAIF BACU019611/1-460 PCDTVYLWSC LNCFGLNFEL WVQKLAEWGP LARIEASLSE QMSRRVRAIF 701 750 ENSBTAP00000044734/1-501 GAMNFWAIIM YNLVSLNSPE FTDLVAQRLL LSGFPQTTLA ILFVTYCGVQ ENSP00000405423/1-504 GAMNFWAIIM YNLVSLNSLK FTELVARRLL LTGFPQTTLS ILFVTYCGVQ ENSTTRP00000009232/1-463 GAMNFWAIIM YNLVSLNSFE FTELVAKRLL LT-------- ---------- bmy_03306T0/1-769 GAMNFWAIIM YNLVSLNSFE FTELVAQRLL LTGFPQTTLA VLFVTYCGVQ BACU019611/1-460 GAMNFWAIIM YNLVSLNSFE FTELVAQRLL LS-------- ---------- 751 800 ENSBTAP00000044734/1-501 LVKERERTLA LEEEQKQDKE KLE ENSP00000405423/1-504 LVKERERTLA LEEEQKQDKE KPE ENSTTRP00000009232/1-463 ---------- ---------- --- bmy_03306T0/1-769 LVKERERTLT L-EEQKQDKE KPE BACU019611/1-460 ---------- ---------- ---