KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:03 2014 Check: 00 .. Name: ENSP00000359478/1-1545 Len: 1548 Check: 6396 Weight: 1.00 Name: ENSBTAP00000044493/1-1543 Len: 1548 Check: 1410 Weight: 1.00 Name: ENSTTRP00000011249/1-1543 Len: 1548 Check: 2020 Weight: 1.00 Name: bmy_14137T0/1-1365 Len: 1548 Check: 4109 Weight: 1.00 Name: BACU012409/1-1156 Len: 1548 Check: 3750 Weight: 1.00 // 1 50 ENSP00000359478/1-1545 MLEKFCNSTF WNSSFLDSPE ADLPLCFEQT VLVWIPLGYL WLLAPWQLLH ENSBTAP00000044493/1-1543 MLDTFCNSTF WNSSLLDSPE VDLPICFEQT VLVWIPIDFC WRII-WHFFQ ENSTTRP00000011249/1-1543 MLEKFCNSTF WNSSFLDSPE VDLPLCFEQT VLVWIPLGFL WLLAPWQFLY bmy_14137T0/1-1365 MLEKFCNSTF WNSSFLDSPE ADLPLCFEQT VLVWIPLGFL WLLAPWQLLY BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000359478/1-1545 VYKSRTKRSS TTKLYLAKQV FVGFLLILAA IELALVLTED SGQATVPAVR ENSBTAP00000044493/1-1543 INTTGLKKST WTRLLFSSEV IVGFLLILAA IDLALALTEG TGQAAVPAVR ENSTTRP00000011249/1-1543 VYRSRTKKSS ITKLYLTKQV LVGFLLILAV IDLALALTED TGQATVPAVR bmy_14137T0/1-1365 VYRSRTKKSS ITKLYLAKQV LVGFLLILAA IDLALALTED TGQATVPAIR BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000359478/1-1545 YTNPSLYLGT WLLVLLIQYS RQWCVQKNSW FLSLFWILSI LCGTFQFQTL ENSBTAP00000044493/1-1543 YTNPILYLVT WVLVLLIQHS RRWCVQKDSW YLSLFWILSI LCGTFQFQTL ENSTTRP00000011249/1-1543 YTNPSLYLGT WILVLLIQHS RRWCVQKDSW FLSVFWILSI LCGTFQFQTL bmy_14137T0/1-1365 YTNPSLYLGT WILVLLIQHS RRWCIQXDSW FLSLFWILSI LCGTFQFQTL BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000359478/1-1545 IRTLLQGDNS NLAYSCLFFI SYGFQILILI FSAFSENNES SNNPSSIASF ENSBTAP00000044493/1-1543 IRALLKDSSS NLAYSCVYFI FYAFQILVLI LSAFSEKDDS SKNPSTTASF ENSTTRP00000011249/1-1543 IQTLLRGSNP NLAYSCVFLI CYALQILVLI LSAFSEKNDS SKHPSTTASF bmy_14137T0/1-1365 IRTLLR---- ---------- ---------- ---------- --HPSTTASF BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000359478/1-1545 LSSITYSWYD SIILKGYKRP LTLEDVWEVD EEMKTKTLVS KFETHMKREL ENSBTAP00000044493/1-1543 LSSITFSWYD STVLKGFRKP LTLEDIWDIE DAAKTKALVS RFEKYMAEEL ENSTTRP00000011249/1-1543 LSSITFSWYD SIVLKGFKKP LTLEDIWDID EETKTKTLVS RFEKYMAGEL bmy_14137T0/1-1365 LSSITFSWYD SIVLKGFKKP LTLEDVWDID EETKTKTLVS RFEKYMAGEL BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000359478/1-1545 QKARRALQRR QEKSSQQNSG ARLPGLNKNQ SQSQDALVLE DVEKKKKKSG ENSBTAP00000044493/1-1543 QKARRAFQKR QKKKSKRNPG ASVNGLDKNQ SQSQDVLVLE ETKKKKKKSE ENSTTRP00000011249/1-1543 QKARQAFQKR QQKNSQRNPG ARLHGLDKNQ SQSQDVLVLE ETKKNKKKSE bmy_14137T0/1-1365 QKARQAFQKR QQKNTQRNPG ARLHGLDKNQ SQSQDVLVLE ETKKNKKKTE BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000359478/1-1545 TKKDVPKSWL MKALFKTFYM VLLKSFLLKL VNDIFTFVSP QLLKLLISFA ENSBTAP00000044493/1-1543 TTKDFPKSWL VKALFKTFYV ILLKSFLLKV VYDILTFLNP QLLKLLIAFA ENSTTRP00000011249/1-1543 TTKDFPRSWL AKALFKTFYV ILLKSFLLKL VYDILMFLNP QLLKLLISFA bmy_14137T0/1-1365 TTKDFPKSWL VKALFKTFYV ILLKSFLLKL VYDVLMFLNP QLLKLLISFA BACU012409/1-1156 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000359478/1-1545 SDRDTYLWIG YLCAILLFTA ALIQSFCLQC YFQLCFKLGV KVRTAIMASV ENSBTAP00000044493/1-1543 NDRGIYLWTG YLYSILLFVV ALIQSFCLQY YFQLCFMLGM KVRTTIMASV ENSTTRP00000011249/1-1543 NDHDIYLWTG YLYSILFFAV ALIQSVCLQY YFKLCFMLGM KVRTTIMASV bmy_14137T0/1-1365 NDRDIYLWTG YLYSILFFAV ALIQSVCLQY YFKLCFMLGM KVRTTIMASV BACU012409/1-1156 ---------- ---------- ---------- ------MLGM KVRTTIMASV 401 450 ENSP00000359478/1-1545 YKKALTLSNL ARKEYTVGET VNLMSVDAQK LMDVTNFMHM LWSSVLQIVL ENSBTAP00000044493/1-1543 YKKALTVSNR ARKQYTIGET VNLMSVDAQK LMDVTNFIHL LWSNVLQIAL ENSTTRP00000011249/1-1543 YKKALTLSNQ ARKQYTIGET VNLMSVDAQK LMDVTNFIHL LWSNVLQISL bmy_14137T0/1-1365 YKKALTLSNQ ARKQYTIGET VNLMSVDAQK LMDVTSFIHL LWSNVLQISL BACU012409/1-1156 YKKALTLSNQ ARKQYTIGET VNLMSVDAQK LMDVTSFIHL LWSNVLQISL 451 500 ENSP00000359478/1-1545 SIFFLWRELG PSVLAGVGVM VLVIPINAIL STKSKTIQVK NMKNKDKRLK ENSBTAP00000044493/1-1543 AIYFLWAELG PSVLAGVGVM VILIPINGVL ATRNRAIQVK NMKNKDSRLK ENSTTRP00000011249/1-1543 SIYFLWAELG PSVLAGVGVM VLLIPINGVI ATKNRAIQVK NMKYKDNRLK bmy_14137T0/1-1365 SIYFLWAELG PSVLAGVGVM VLVIPINGVI ATKNRAIQVK NMKYKDNRLK BACU012409/1-1156 SIYFLWAELG PSVLAGVGVM VLLIPINGVI ATKNRAIQVK NMKYKDNRLK 501 550 ENSP00000359478/1-1545 IMNEILSGIK ILKYFAWEPS FRDQVQNLRK KELKNLLAFS QLQCVVIFVF ENSBTAP00000044493/1-1543 IMNEILSGIK ILKYFAWEPS FQNQVHNLRK KELRNLLRFG QLQSAIMFLL ENSTTRP00000011249/1-1543 IMNEVLSGIK ILKYFAWEPS FQNQVHDLRK KELRNLLTFG QLQSVMIFLL bmy_14137T0/1-1365 IMNEVLSGIK ILKYFAWEPS FQNQVHNLRK KELRNLLTFG QLQSVMIFLL BACU012409/1-1156 IMNEVLSGIK ILKYFAWEPS FQNQVHDLRK KELRNLLTFG QLQSVMIFLL 551 600 ENSP00000359478/1-1545 QLTPVLVSVV TFSVYVLVDS NNILDAQKAF TSITLFNILR FPLSMLPMMI ENSBTAP00000044493/1-1543 YLTPVLVSVI TFSVYVLVDS SNVLDAQKAF TSITLFNILR FPMSMLPMLI ENSTTRP00000011249/1-1543 YLTPVLVSVI TFSVYVLVDS SNILDAEKAF TSITLFNILR FPMSMLPMIV bmy_14137T0/1-1365 YLTPVLVSVI TFSVYVLVDS NNILDAEKAF TSITLFNILR FPMSMLPMIV BACU012409/1-1156 YLTPVLVSVI TFSVYVLVDS NNILDAEKAF TSITLFNILR FPMSMLPMIV 601 650 ENSP00000359478/1-1545 SSMLQASVST ERLEKYLGGD DLDTSAIRHD CNF-DKAMQF SEASFTWEHD ENSBTAP00000044493/1-1543 SSMLQASVST ERLEKYLGGD DLDTSAIRHD CNSADKAVQF SEASFTWDHD ENSTTRP00000011249/1-1543 STMLQASVSV ERLEKYLGGD DLDTSAIRHD CNF-DKAVQF SEASFTWDHN bmy_14137T0/1-1365 SAMLQASVSI ERLEKYLGGD DLDTSAIRHD CSF-DKAVQF SEASFTWDHD BACU012409/1-1156 SAMLQASVSV ERLEKYLGGD DLDTSAIRHD CSF-DKAVQF SEASFTWDHD 651 700 ENSP00000359478/1-1545 SEATVRDVNL DIMAGQLVAV IGPVGSGKSS LISAMLGEME NVHGHITIKG ENSBTAP00000044493/1-1543 LGVTIQDVNL DIMPGQLVAV VGTVGSGKSS LMSAMLGEME NVHGHITVKG ENSTTRP00000011249/1-1543 SEVTIQDVNL DIMPGQLVAV VGTVGSGKSS LMSAMLGEME NVHGHITVKG bmy_14137T0/1-1365 LEVTIQDVNL DIMPGQLVAV VGTVGSGKSS LMSAMLGEME NVHGHITVKG BACU012409/1-1156 LEVTIQDVNL DIMPGQLVAV VGTVGSGKSS LMSAMLGEME NVHGHITVKG 701 750 ENSP00000359478/1-1545 TTAYVPQQSW IQNGTIKDNI LFGTEFNEKR YQQVLEACAL LPDLEMLPGG ENSBTAP00000044493/1-1543 SVAYVPQQSW IQNGTIKENI LFGSELDEKK YQRVLEACAL LPDLEVLPGG ENSTTRP00000011249/1-1543 TVAYVPQQSW IQNGTIKDNI LFGSELDEKK YQQVLEACAL FPDLEVLPGG bmy_14137T0/1-1365 TVAYVPQQSW IQNGTIKDNI LFGSELDEKK YQQ----CCL --------GE BACU012409/1-1156 TVAYVPQQSW IQNGTIKDNI LFGSELDEKK YQQVLEACAL LPDLEVLPGG 751 800 ENSP00000359478/1-1545 DLAEIGEKGI NLSGGQKQRI SLARATYQNL DIYLLDDPLS AVDAHVGKHI ENSBTAP00000044493/1-1543 DMAEIGEKGI NLSGGQKQRI SLARATYQNS DIYILDDPLS AVDAHVGKHI ENSTTRP00000011249/1-1543 DLAEIGEKGI NLSGGQKQRI SLARATYQNS DIYILDDPLS AVDAHVGKHI bmy_14137T0/1-1365 TWLRLERRYL GHQGALKGEE IVKEKSKGGE EVH------D TVDAHVGKHI BACU012409/1-1156 DLAEIGEKGI NLSGGQKHRI SLARATYQNS DIYILDDPLS AVDAHVGKHI 801 850 ENSP00000359478/1-1545 FNKVLGPNGL LKGKTRLLVT HSMHFLPQVD EIVVLGNGTI VEKGSYSALL ENSBTAP00000044493/1-1543 FNKVLGPNGL LKGKTRILVT HSIHFLPQVD EIVVVGNGTI MEKGSYSTLL ENSTTRP00000011249/1-1543 FNKVLGPNGL LKGKTRLLVT HSIHFLPQVD EIVVLGNGII VEKGSYSTLL bmy_14137T0/1-1365 FNKVLGPSGL LKGKTRLLVT HSIHFLPQVD EIVVLGNGTI LEKGSYSTLL BACU012409/1-1156 FNKVLGPNGL LKGKTRLLVT HSIHFLPQVD EIVVLGNGTI LEKGSYSTLL 851 900 ENSP00000359478/1-1545 AKKGEFAKNL KTFLRHTGPE EEATVHDGSE EEDDDYGLIS SVEEIPEDAA ENSBTAP00000044493/1-1543 ANKGLFAKNL KTFVKQTGPE DEAT--VNED SEDDDCGLVP SVEEIPEDVA ENSTTRP00000011249/1-1543 AKKGLFAKNL KTFIKQTGPK DEPTXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14137T0/1-1365 AKKGLFAKNL KTFIKQTGPK DEAT--VNED SEEDDYGLMP SVEEIPEDVA BACU012409/1-1156 AKKGLFAKNL KTFIKQTGPK DEAT--VNED SEEDDYGLMP SVEEIPEDVA 901 950 ENSP00000359478/1-1545 SITMRRENSF RRTLSRSSRS NGRHLKSLRN SLKTRNVNSL KEDEELVKGQ ENSBTAP00000044493/1-1543 SLSMKKENDL HRTLSRRSRS SSRHLKSLKD SLKIRNANIL KEEEEPVRGQ ENSTTRP00000011249/1-1543 XXXXXXXXXX XXXXXXXSRS SSRRLKPLKD -LKTRNVNIL KEEEEPVKGQ bmy_14137T0/1-1365 SLSMKRENSF HRTFSRSSRS SSRRLKSLKD -LKTRNVNIL KEEEEPVKGQ BACU012409/1-1156 SLSMKRENSF HRTFSRSSRS SSRRLKSLKD -LKTWNVNIL KEEEEPVKGQ 951 1000 ENSP00000359478/1-1545 KLIKKEFIET GKVKFSIYLE YLQAIGLFSI FFIILAFVMN SVAFIGSNLW ENSBTAP00000044493/1-1543 KLIKKEFVQT GKVKFSIYLK YLQAIGWCSI VFILLGFVIY YVAFIGSNLW ENSTTRP00000011249/1-1543 KLIKKEFIQT GKVKFSIYLK YLQAIGWCSI FFIIFGFVLH SVSFIGSNLW bmy_14137T0/1-1365 KLIKKEFIQT GKVKFSIYLK YLQAIGWCSI FFIIFGFVLY SVSFIGSNLW BACU012409/1-1156 KLIKKEFIQT GKVKFSIYLK YLQAIGWCSI FFIIFGFVLY SVSFIGSNLW 1001 1050 ENSP00000359478/1-1545 LSAWTSDSKI FNSTDYPASQ RDMRVGVYGA LGLAQGIFVF IAHFWSAFGF ENSBTAP00000044493/1-1543 LSAWTSDSKI YNGTNYPSSQ RDLRVGVYGA LGVAQGLFVF IANIWSVYGC ENSTTRP00000011249/1-1543 LSAWTRDSKT FNSTNYPASQ RDLRVGVYGA LGLAQGIFVL IANLWSVYGS bmy_14137T0/1-1365 LSAWTRDSKT FNSTNYPASQ RDLRVGVYGA LGLAQGIFVL IANLWSVYGS BACU012409/1-1156 LSAWTRDSKT FNSTNYPASQ RDLRVGVYGA LGLAQGIFVL IANLWSVYGS 1051 1100 ENSP00000359478/1-1545 VHASNILHKQ LLNNILRAPM RFFDTTPTGR IVNRFAGDIS TVDDTLPQSL ENSBTAP00000044493/1-1543 NHASNILHKQ LLNNILRAPM SFFDTTPIGR IVNRFAGDLF TVDDTLPMSL ENSTTRP00000011249/1-1543 VHAASILHKQ LLNNILRVPM SFFDTTPTGR IVNRFAGDIS TVDDTPPQSL bmy_14137T0/1-1365 IHAANILHKQ LLNNILRVPM SFFDTTPIGR IVNRFAGDIS TVDDTLPTSL BACU012409/1-1156 VHAANILHKQ LLNNILRVPM SFFDTTPIGR IVNRFAGDIS TVDDTLPTSL 1101 1150 ENSP00000359478/1-1545 RSWITCFLGI ISTLVMICMA TPVFTIIVIP LGIIYVSVQM FYVSTSRQLR ENSBTAP00000044493/1-1543 RSCVLCFLGI ISTLVMICLA TPIFVVVIIP LGIIYVSVQI FYVATSRQLR ENSTTRP00000011249/1-1543 RSWILCFLGI ISTLVXXXXX XXXXXXXXXX XXXXXXXXXI FYVATSRQLR bmy_14137T0/1-1365 RSWVLCFLGI ISTLVMICLA TPVFVIVIIP LGIIYVSVQI FYVATSRQLR BACU012409/1-1156 RSWVLCFLGI TSTLVMICLA TPVFVIVIIP LGIIYVSVQI FYVATSRQLR 1151 1200 ENSP00000359478/1-1545 RLDSVTRSPI YSHFSETVSG LPVIRAFEHQ QRFLKHNEVR IDTNQKCVFS ENSBTAP00000044493/1-1543 RLDSVTRSPI YSHFSETVSG LSVIRAFEHQ QRFLKQSETA IDTNQKCVFS ENSTTRP00000011249/1-1543 RLDSVTRSPI YSHFSETVSG LSVIRAFEHQ ERFLKHNEMV TDTNQKCVFS bmy_14137T0/1-1365 RLDSVTRSPI YSHFSETVSG LSVIRAFGHQ ERFLTHNEMA TDTNQKCVFS BACU012409/1-1156 RLDSVTRSPI YSHFSETVSG LSVIRAFEHQ ERFLKHNEMA TDTNQKCVFS 1201 1250 ENSP00000359478/1-1545 WITSNRWLAI RLELVGNLTV FFSALMMVIY RDTLSGDTVG FVLSNALNIT ENSBTAP00000044493/1-1543 WITSNRWLAV RLELIGNLIV FFASLMMVIY RNNLSGDTVG FVLSNALNIT ENSTTRP00000011249/1-1543 WITSNRWLAI RLELIGNLIV FFSSLMMVIY RDTLSGDTVG FVLSNALSIT bmy_14137T0/1-1365 WITSNRWLAV RLELIGNLIV FFSSLMMVIY RDTLSGDTVG FVLSNALSIT BACU012409/1-1156 WITSNRWLAV RLELIGNLIV FFSSLMMVIY RDTLSGDTVG FVLSNALSIT 1251 1300 ENSP00000359478/1-1545 QTLNWLVRMT SEIETNIVAV ERITEYTKVE NEAPWVTDKR PPPDWPSKGK ENSBTAP00000044493/1-1543 QTLNWLVRMT SEIETNIVAV ERITEYINVE NEAPWVTDKR PPEGWPSKGE ENSTTRP00000011249/1-1543 QTLNWLVRMT SEIETNIVAV ERINEYINVE NEAPWVTDKR PPEGWPSKGE bmy_14137T0/1-1365 QTLNWLVRMT SEIETNIVAV ERINEYINVE NEAPWVTDKR PPEGWPSKGE BACU012409/1-1156 QTLNWLVRMT SEIETNIVAV ERINEYINVE NEAPWVTDKR PPEGWPSKGE 1301 1350 ENSP00000359478/1-1545 IQFNNYQVRY RPELDLVLRG ITCDIGSMEK IGVVGRTGAG KSSLTNCLFR ENSBTAP00000044493/1-1543 IQFSNYQVRY RPELDLVLKG ITCDIKSTEK IGVVGRTGAG KSSLTNCLFR ENSTTRP00000011249/1-1543 IQFSNYQVRY RPELDLVLKG ITCDIKSTEK IGVVGRTGAG KSSLTNSLFR bmy_14137T0/1-1365 IRFSNYQVRY RPELDLVLKG ITCDIKSTEK IGVVGRTGAG KSSLTNSLFR BACU012409/1-1156 IRFSNYQVRY RPELDLVLKG ITCDIKSTEK IGVVGRTGAG KSSLTNSLFR 1351 1400 ENSP00000359478/1-1545 ILEAAGGQII IDGVDIASIG LHDLREKLTI IPQDPILFSG SLRMNLDPFN ENSBTAP00000044493/1-1543 ILEAAGGQIT IDGVDIASIG LHDLREKLTI IPQDPILFSG SLRMNLDPFN ENSTTRP00000011249/1-1543 ILEAAGGQIT IDGVDIASIG LHDLREKLTI IPQDPILFSG SLRMNLDPFN bmy_14137T0/1-1365 ILEAAGGQIT IDGVDIASIG LHDLREKLTI IPQ------- ---------- BACU012409/1-1156 ILEAAGGQIT IDGVDIASIG LHDLREKLTI IPQDPILFSG SLRMNLDPFN 1401 1450 ENSP00000359478/1-1545 NYSDEEIWKA LELAHLKSFV ASLQLGLSHE VTEAGGNLSI GQRQLLCLGR ENSBTAP00000044493/1-1543 NYSDEEIWKA LELSHLKSFV AGLQAGLSYE VTEGGDNLSI GQRQLLCLAR ENSTTRP00000011249/1-1543 NYSDEEIWKA LELAHLKSFV DGLQAGLSYE VTEGGDNLSI GQRQLLCLAR bmy_14137T0/1-1365 ---------- ---VSCRTY- ---------- ---------- ---------- BACU012409/1-1156 NYSDEEIWKA LELAHLKSFV DGLQAGLSYE VTEGGDNLSI GQRQLLCLAR 1451 1500 ENSP00000359478/1-1545 ALLRKSKILV LDEATAAVDL ETDNLIQTTI QNEFAHCTVI TIAHRLHTIM ENSBTAP00000044493/1-1543 ALLRKSKILI MDEATAAVDL ETDQLIQTTI QTEFSHCTTI TIAHRLHTIM ENSTTRP00000011249/1-1543 ALLQKSKILI MDEATAAVDL ETDRLIQTTI QTEFSHCTTI TIAHRLHTIM bmy_14137T0/1-1365 ---------- ---------- ---------- ------SVTC SLFYRKHVHL BACU012409/1-1156 ALLQKSKILI MDEATAAVDL ETDHLIQTTI RTEFSHCTTI AIAHRLHTVM 1501 1550 ENSP00000359478/1-1545 DSDKVMVLDN GKIIECGSPE ELLQIPGPFY FMAKEAGIEN VNSTKF-- ENSBTAP00000044493/1-1543 DSDKVMVLDS GKIVEYDSPE ELLKNPGPFY FMAQEAGIEN TNSTTF-- ENSTTRP00000011249/1-1543 DSD-VMVLDN GKIVEYGSPE ELLKNTGPFY FMAQEAGIEN TNCTAF-- bmy_14137T0/1-1365 PLD------- --VCSFG--- ---------- ------GIIS AVYLGYLS BACU012409/1-1156 DSDKVMVLDN GKIVEYGSPE ELLKNTGPFY FMAQEAGIEN TNCTAF--