KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:52 2014 Check: 00 .. Name: ENSP00000304447/1-281 Len: 404 Check: 7122 Weight: 1.00 Name: ENSBTAP00000044273/1-319 Len: 404 Check: 3973 Weight: 1.00 Name: bmy_00071T0/1-361 Len: 404 Check: 3439 Weight: 1.00 Name: BACU019248/1-248 Len: 404 Check: 2452 Weight: 1.00 Name: ENSTTRP00000006596/1-274 Len: 404 Check: 2337 Weight: 1.00 // 1 50 ENSP00000304447/1-281 ---------- ---------- ---------- ----MAGTWL LLLLALGCPA ENSBTAP00000044273/1-319 ---------- ---------- ---------- ----MAESWL LLLLALGCPA bmy_00071T0/1-361 MQLGLWPARQ SCGRLLPQPT AQVCSWVLPL LTWAMPGTWL LLLLALGCPA BACU019248/1-248 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006596/1-274 ---------- ---------- ---------- ----MPGTWL LLLLALGCPA 51 100 ENSP00000304447/1-281 LPT------- ----GVGGTP FPSLAPPIML LVDGKQQMVV VCLVLDVAPP ENSBTAP00000044273/1-319 LPTEVTTLLR PAQQGMGSTP FPSLAPPITL LVDGKQQTLV VCLVLDVAPP bmy_00071T0/1-361 LPT------- ----GVGSTP FPSLAPPITL LVDGKQQTLV VCLVLDVAPP BACU019248/1-248 ---------- ----GVGSTP FPSLAPPITL LVDGKQQTLV VCLVLDVAPP ENSTTRP00000006596/1-274 LPT------- ----GVGSTP FPSLAPPITL LVDGKQQTLV VCLVFDVAPP 101 150 ENSP00000304447/1-281 GLDSPIWFSA GNGSALDAFT YGPSPATDGT WTNLAHLSLP SEELASWEPL ENSBTAP00000044273/1-319 GFESPIWFSA GNGSSLDAFT YGPSPAEDGT WTRLAQLSLY SEELAAWDTL bmy_00071T0/1-361 GLESPIWFSA GNGSSLDAFT YGPSPAADGT WTSLAQLSLP SEDLAAWETL BACU019248/1-248 DLESPIWFSA ENGSSLDAFT YGPSPAADGT WTSLAQLSLP SEDLAAWETL ENSTTRP00000006596/1-274 GLESPIWFSA GNGSSLDAFT YGPSPAADGT WTSLAQLSLP SEDLAAWETL 151 200 ENSP00000304447/1-281 VCHTGPGAEG HSRSTQPMHL SGEASTARTC PQEPLRGTPG GALWLGVLRL ENSBTAP00000044273/1-319 VCHTGPGAGD HGQSTQPLQL SGDASSARTC LWEPLRGTRA LVLRLGALRL bmy_00071T0/1-361 VCHTGPGTGD HSQSTQPLQL S--------- ------GTRG QALRLGALRL BACU019248/1-248 VCHTGPGTGG QSQSTQPLQL SGEASSARTC LWEPLRGTRG QALRLGALRL ENSTTRP00000006596/1-274 VCHTGPGTGD HSQSTQPLQL SGEASSARTC LWEPLRGTRG QVLRLEALRL 201 250 ENSP00000304447/1-281 LLFKLLLFDL LLTCSCLCDP AGPLPSPATT TRLRALGS-H RLHPATETG- ENSBTAP00000044273/1-319 LLFKLLLLDV LLTCGRLHAP PAARGDPA-- ------GASG PGAPSLPAPH bmy_00071T0/1-361 LLFKLLLLDV LLTCSRFRAP PAARGDPA-- ------RAPR PGDPGLPAA- BACU019248/1-248 LLFKLLMLDV LLTCSRFRAP PAARGDPAPS ATGRIARSPH RLD-AVMGG- ENSTTRP00000006596/1-274 LLFKLLLLDV LLTCSRFRAP AGPPPLPAAS ATGRIVRRPH RLDAAMMGG- 251 300 ENSP00000304447/1-281 --GREA---- -------TSS PRP------- ---------- -------QPR ENSBTAP00000044273/1-319 EVPRADSRLL PQPPPPRGSS SGPADRIRRN HGGTTGRGLS VSASPPLEPR bmy_00071T0/1-361 --PRADHLLR PQPPPPGGSP AAPTDWIRRS DGWTTGRGLS LSTPPALQPR BACU019248/1-248 --PQAE---- -------GSA CPP------- ---------- -------QPR ENSTTRP00000006596/1-274 --PQAD---- -------GSA CPP------- ---------- -------QPR 301 350 ENSP00000304447/1-281 DRR-WGDT-P PGRKPGSPVW GEGSY----- ---------- -----LSSYP ENSBTAP00000044273/1-319 DRRRRVHTRR PRRDPRNPVW EEGPP----- ---------- ---------- bmy_00071T0/1-361 DGR-WVHTRH PGRDPRSPVW EEGPLDQGAA SSPLALVLQP LPEPPLWDGK BACU019248/1-248 DGH-WVHTRH PGRDPRSPVW EEGPL----- ---------- ---------- ENSTTRP00000006596/1-274 DGR-WVHTRP PGRDPRSPVW EEGRR----- ---------- ---------- 351 400 ENSP00000304447/1-281 TCPAQAWCSR SALRA----- ---------- PSSSLGAFFA GDLPPPLQAG ENSBTAP00000044273/1-319 --VLRAWSSG PSFSL----- ---------- STSSLGAFLC N-LPPPADPS bmy_00071T0/1-361 RCCHRSLRAP SALSLAEAEK RSSSLSLEAN PEKPIGCLVR G-PPSALGAG BACU019248/1-248 --VLRAWRSG PALSI----- ---------- PASSLGAFLC G-LPP----- ENSTTRP00000006596/1-274 --C-SAWRSG PALSI----- ---------- PASSLGAFLC D-LPPQLTRA 401 450 ENSP00000304447/1-281 AA-- ENSBTAP00000044273/1-319 FPGG bmy_00071T0/1-361 ---- BACU019248/1-248 ---- ENSTTRP00000006596/1-274 SR--