KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:51 2014 Check: 00 .. Name: ENSP00000264036/1-646 Len: 646 Check: 731 Weight: 1.00 Name: ENSBTAP00000044248/1-645 Len: 646 Check: 9942 Weight: 1.00 Name: ENSTTRP00000005127/1-621 Len: 646 Check: 3260 Weight: 1.00 Name: bmy_03238T0/1-638 Len: 646 Check: 8638 Weight: 1.00 Name: BACU017344/1-638 Len: 646 Check: 9438 Weight: 1.00 // 1 50 ENSP00000264036/1-646 MGLPRLVCAF LLAACCCCPR VAGVPGEAEQ PAPELVEVEV GSTALLKCGL ENSBTAP00000044248/1-645 MGRSGLICAF LLAVCCCSRR AAGVPGEAEQ PEPELVEVEV GHTALLKCGL ENSTTRP00000005127/1-621 ---------- ---------- ---VPGEAEQ PDPELVEVEV GGTALLKCGP bmy_03238T0/1-638 MGRSGLICAF LIAACCCCRR AAGVPGEAER PQPELVEVEV GGTALLKCGP BACU017344/1-638 MGRSGLICAF LIAACCCCRR AAGVPGEAER PQPELVEVEV GGTALLKCGP 51 100 ENSP00000264036/1-646 SQSQGNLSHV DWFSVHKEKR TLIFRVRQGQ GQSEPGEYEQ RLSLQDRGAT ENSBTAP00000044248/1-645 SHAQGNLSHV DWFSVHKEKR MLIFRVRQGQ GQSEPGEYHN RLSLQDKGTT ENSTTRP00000005127/1-621 SHSPGNFSHA DWFSVHKEKP TLIFRVRQGQ GQSEPGEYQN RLSLQDKGTT bmy_03238T0/1-638 SHSQGNFSHA DWFSVHKEKP TLIFRVSQGQ GQSEPGEYQN RLSLQDKGTT BACU017344/1-638 SHSQGNFSLA DWFSVHKEKP TLIFRVSQGQ GQSEPGEYQN RLSLQDKGTT 101 150 ENSP00000264036/1-646 LALTQVTPQD ERIFLCQGKR PRSQEYRIQL RVYKAPEEPN IQVNPLGIPV ENSBTAP00000044248/1-645 LVLTGVTPHD DRIFTCQGKR -RAQEHRIRL RVYKAPEEPS IQVNTLGISV ENSTTRP00000005127/1-621 LALTGITPHD ERIFLCQGKR PRSQEHRIQL RVYKAPEEPL IQVNALGISV bmy_03238T0/1-638 LALTGITPHD ERIFLCQGKR PRSQGHRIQL RVYKAPEEPI IQVNALGISV BACU017344/1-638 LALTGITPHD ERIFLCQGKR PRSQGHRIQL RVYKAPEEPV IQVNALGISV 151 200 ENSP00000264036/1-646 NSKEPEEVAT CVGRNGYPIP QVIWYKNGRP LKEEKNRVHI QSSQTVESSG ENSBTAP00000044248/1-645 NSEEPVEVAT CVGRNGYPVP QVTWYKNGQS LKEEKNRVHI QSSQTEESNG ENSTTRP00000005127/1-621 NSEEPGEVAT CVGRNGYPLP QVTWYKNSQS LKEEKNRVHI QSSQIVESSG bmy_03238T0/1-638 NSEEPEEVAT CVGRNGYPLP QVTWYKNSQS LKEEKNRVHI QSSQIVESSG BACU017344/1-638 NSEEPEEVAT CVGRNGYPLP QVTWYKNSQS LKEEKNRVHI QSSQIVESSG 201 250 ENSP00000264036/1-646 LYTLQSILKA QLVKEDKDAQ FYCELNYRLP SGNHMKESRE VTVPVFYPTE ENSBTAP00000044248/1-645 LFTLRSVLQA QVSKEDKDAQ FYCELSYRLP SGNHMKESKE VTVPVFYPAE ENSTTRP00000005127/1-621 LYTLRSVLKA QLTKEDKDAQ FYCELSYRLP SGNHMKESRE VTVPVFYPAE bmy_03238T0/1-638 LYTLRSVLKA QLTKEDKDAQ FYCELSYRLP SGNHMKESRE VTVPVFYPAE BACU017344/1-638 LYTLRSVLKA QLTKEDKDAQ FYCELSYRLP SGNHMKESRE VTVPVFYPAE 251 300 ENSP00000264036/1-646 KVWLEVEPVG MLKEGDRVEI RCLADGNPPP HFSISKQNPS TREAEEETTN ENSBTAP00000044248/1-645 RVWLEVEPEG MLKEGDRVEI RCLADGNPQP PFSIIKQNLH TREMEEERTD ENSTTRP00000005127/1-621 RVWLEVEPEG MLKEGDRVEI RCLADGNPPP HFSIGKQNLS TREMEEERTD bmy_03238T0/1-638 RVWLEVEPEG MLKEGDRVEI RCLADGNPPP HFSISKQNLS TREMEEERTD BACU017344/1-638 RVWLEVEPEG MLKEGDRVEI RCLADGNPPP HFSISKQNLR TREMEEERTD 301 350 ENSP00000264036/1-646 DNGVLVLEPA RKEHSGRYEC QGLDLDTMIS LLSEPQELLV NYVSDVRVSP ENSBTAP00000044248/1-645 DNGVLVLDPA QKEHSGRYEC QGLDLETTTS LQSDQQELVV NYVSDVRVSP ENSTTRP00000005127/1-621 DNGVLVLEPA RKEHSGLYEC QGLDLESTAS LLSDQQELVV NYVSEVRVSP bmy_03238T0/1-638 DNGVLVLEPA QKEHSGLYEC QGLDLETTAS LLSDQQELVV NYVSEVRVSP BACU017344/1-638 DNGVLVLEPA QKEHSGLYEC QGLDLETTAS LLSDQQELVV NYVSEVRVSP 351 400 ENSP00000264036/1-646 AAPERQEGSS LTLTCEAESS QDLEFQWLRE ETGQVLERGP VLQLHDLKRE ENSBTAP00000044248/1-645 AAPESQEGSS LTLNCEAESN QDLQFQWLRE KTGKLLAKGQ ALQLHNLKRE ENSTTRP00000005127/1-621 AAPESQEGSS LTLTCEAESN QDLEFQWLRE KTGKVLAKGP VLQLRNLKRE bmy_03238T0/1-638 AAPESQEGSS LTLTCEAESN QDLEFQWLRE KTGKVLAKGP VLHLRNLKRE BACU017344/1-638 AAPESQEGSS LTLTCEAESN QDLEFQWLRE KTGKVLAKGP VLQLRNLKRE 401 450 ENSP00000264036/1-646 AGGGYRCVAS VPSIPGLNRT QLVNVAIFGP PWMAFKERKV WVKENMVLNL ENSBTAP00000044248/1-645 EGGGYRCLAS VPSVPGLNRS QLVNVAIFGP PWMALREKKM WVKENSVLNL ENSTTRP00000005127/1-621 AGGGYRCVAS VPSVPGLNRT QLVNVAIFGS PWMALRERKM WVKENSMLNL bmy_03238T0/1-638 AGGGYRCVAS VPSVPGLNRT QLVNVAIFGS PWMALRERKM WVKENSVLNL BACU017344/1-638 AGGGYRCVAS VPSVPGLNRT QLVNVAIFGS PWMALRERKM WVKENSVLNL 451 500 ENSP00000264036/1-646 SCEASGHPRP TISWNVNGTA SEQDQDPQRV LSTLNVLVTP ELLETGVECT ENSBTAP00000044248/1-645 SCEASGHPRP SIVWSIQGTA NEQDQEPQSV LSVLNVLVTP ELLETGAECV ENSTTRP00000005127/1-621 SCEASGHPRP SVVWSVDGTA SEQDQDPQSV LSVLNVLVTP ELLETGAECV bmy_03238T0/1-638 SCEASGHPRP SIVWSVDGTA SEQDQDPQSV LSVLNVLVTP ELLETGAECV BACU017344/1-638 SCEASGHPRP SIVWSVDGTA SEQDQDPQSV LSVLNVLVTP ELLETGAECV 501 550 ENSP00000264036/1-646 ASNDLGKNTS ILFLELVNLT TLTPDSNTTT GLSTSTASPH TRANSTSTER ENSBTAP00000044248/1-645 ASNSLGRNTT IIFLELVHFM SSTPDSNRTS NLSTSTVSPP ARANGTSTEK ENSTTRP00000005127/1-621 ASNSLGRNTT VIILEL--LT SFTPDSNRST SLSTSTVSPY ARANSTSTEK bmy_03238T0/1-638 ASNSLGRNTT VIILEL---- ----DSNRTT SLSTSTVSPY ARANSTSTEK BACU017344/1-638 ASNSLGRNTT VIILEL---- ----DSNRTT SLSTSTVSPY ARANSTSTEK 551 600 ENSP00000264036/1-646 KLPEPESRGV VIVAVIVCIL VLAVLGAVLY FLYKKGKLPC RRSGKQEITL ENSBTAP00000044248/1-645 KLTEPESKGV VIVAVTVCVL VLALLGAVLY FFYKKGKLPC GRSGKQEITL ENSTTRP00000005127/1-621 KLTEPESKGV VIVAVTVCVL VLAVLGAVLY FFYKKGKLPC GRSGKQEITL bmy_03238T0/1-638 KLTEPESKGV VIVAVTVCVL VLAVLGAVLY FFYKKGKLPC GRSGKQEITL BACU017344/1-638 KLTEPESKGV VIVAVTVCVL VLAVLGAVLY FFYKKGKLPC GRSGKQEITL 601 650 ENSP00000264036/1-646 PPSRKSELVV EVKSDKLPEE MGLLQGSSGD KRAPGDQGEK YIDLRH ENSBTAP00000044248/1-645 PPSRKSEFVV EVKSDKLPEE MGLLQGSSGD KRAPGDQGEK YIDLRH ENSTTRP00000005127/1-621 PPSRKGEFVV EVKSDKLPEE MGLLQGSNGD KRAPGDQGEK YIDLRH bmy_03238T0/1-638 PPSRKGEFVV EVKSDKLPEE MGLLQGSNGD KRAPGDQGEK YIDLRH BACU017344/1-638 PPSRKGEFVV EVKSDKLPEE MGLLQGSNGD KRAPGDQGEK YIDLRH