KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:48 2014 Check: 00 .. Name: ENSBTAP00000044193/1-526 Len: 599 Check: 2284 Weight: 1.00 Name: ENSP00000339933/1-574 Len: 599 Check: 8476 Weight: 1.00 Name: ENSTTRP00000008974/1-595 Len: 599 Check: 6726 Weight: 1.00 Name: bmy_03388T0/1-486 Len: 599 Check: 5551 Weight: 1.00 Name: BACU019579/1-599 Len: 599 Check: 2227 Weight: 1.00 // 1 50 ENSBTAP00000044193/1-526 ---MEQI--- ---------- ---------- -PGDR----- ---------- ENSP00000339933/1-574 MSIQENISSL QLRSWVSKSQ RDLAKSILIG APG------- ---------- ENSTTRP00000008974/1-595 MSVQDNMRPM WLWSWISKSQ RDLAKSILVG APGEP----L TAQRGSDPQR bmy_03388T0/1-486 MSVQDNMRPM WLWSWISKSQ RDLAKSILTG APG------- ---------- BACU019579/1-599 MSVQDNMRPM WLWSWISKSQ RDLAKSILTG APGGKKGPQM PLKRRGKRGD 51 100 ENSBTAP00000044193/1-526 ---------- ---------- ---------- -QRQQLPATM ADTFLEHLCL ENSP00000339933/1-574 --------GP AGYLRRASVA QLTQELGTAF FQQQQLPAAM ADTFLEHLCL ENSTTRP00000008974/1-595 RQACSGMQGP AGYLRRASVA QLTQELGTSF FQQQQLPAAM ADTFLEHLCL bmy_03388T0/1-486 --------GP AGYLRRASVA QLTQELGTSF FQQQQLPAAM ADTFLEHLCL BACU019579/1-599 RQACSGMEGP AGYLRRASVA QLTQELGTSF FQQQQLPAAM ADTFLEHLCL 101 150 ENSBTAP00000044193/1-526 LDIDSEPVVA RSTSIIATIG PASRSVERLK EMIEAGMNIA RLNFSHGSHE ENSP00000339933/1-574 LDIDSEPVAA RSTSIIATIG PASRSVERLK EMIKAGMNIA RLNFSHGSHE ENSTTRP00000008974/1-595 LDIDSEPVAA RSTSIIATIG PASRSVERLK EMIRAGMNIA RLNFSHGSHE bmy_03388T0/1-486 LDIDSEPVAA RSTSIIATIG ---------- ---------- ---------- BACU019579/1-599 LDIDSEPVAA RSTSIIATIG PASRSVERLK EMIRAGMNIA RLNFSHGSHE 151 200 ENSBTAP00000044193/1-526 YHAESIANIR EAVESFANSP LSYRPVAIAL DTKGPEIRTG ILQGDPASEV ENSP00000339933/1-574 YHAESIANVR EAVESFAGSP LSYRPVAIAL DTKGPEIRTG ILQGGPESEV ENSTTRP00000008974/1-595 YHAESIANVR EAVESIATSP LSYRPVAIAL DTKGPEIRTG ILQGGPESEV bmy_03388T0/1-486 ---------- -------KCP LSA------- ----PAASQG LL-GGPASEV BACU019579/1-599 YHAESIANVR EAVESFATSP LSYRPVAIAL DTKGPEIRTG ILQGGPASEV 201 250 ENSBTAP00000044193/1-526 EIVKGSRVLV TVDPEFQTRG DANTVWVDYP NIVRVMPVGG RIYIDDGLIS ENSP00000339933/1-574 ELVKGSQVLV TVDPAFRTRG NANTVWVDYP NIVRVVPVGG RIYIDDGLIS ENSTTRP00000008974/1-595 ELVKGSQVLV TVDPAFRTRG DANTVWVDYA NIVQVVPVGG RIYIDDGLIS bmy_03388T0/1-486 ELLKGSQVLV TVDPAFRTRG DANTVWVDYP NIVQVVPVGG RIYIDDGLIS BACU019579/1-599 ELLKGSQVLV TVDPAFRTRG DANTVWVDYP NIVQVVPVGG RIYIDDGLIS 251 300 ENSBTAP00000044193/1-526 LVVKKIGPEG LETEVENGGV LGSRKGVNLP GTQVDLPGLS EQDVQDLRFG ENSP00000339933/1-574 LVVQKIGPEG LVTQVENGGV LGSRKGVNLP GAQVDLPGLS EQDVRDLRFG ENSTTRP00000008974/1-595 LEVTKIGPEG LETHVENGGV LGSRKGVNLP GAQVDLPGLS EQDVQDLRFG bmy_03388T0/1-486 LEVTKIGAEG LETQVENGGV LGSRKGVNLP GAQVDLPGLS EQDVQDLRFG BACU019579/1-599 LEVTKIGPEG LETQVENGGV LGSRKGVNLP GAQVDLPGLS EQDVQDLRFG 301 350 ENSBTAP00000044193/1-526 VEHGVDIVFV SFVRKASDVA AVRDALGPEG QGIKIVSKIE NHEGVKKFNE ENSP00000339933/1-574 VEHGVDIVFA SFVRKASDVA AVRAALGPEG HGIKIISKIE NHEGVKRFDE ENSTTRP00000008974/1-595 VEHGVDIVFA SFVRRASDVA AVRAALGPEG QGIKIISKIE NHEGVKKFDE bmy_03388T0/1-486 VEHGVDIVFA SFVRRASDVA AVRAALGPEG QGIKIISKIE NHEGVKKFDE BACU019579/1-599 VEHGVDIIFA SFVRRASDVA AVRAALGPEG QGIKIISKIE NHEGVKKFDE 351 400 ENSBTAP00000044193/1-526 ILEVSDGIMV ARGDLGIEIP AEKVFLAQKM MIGRCNLAGK PVVCATQMLE ENSP00000339933/1-574 ILEVSDGIMV ARGDLGIEIP AEKVFLAQKM MIGRCNLAGK PVVCATQMLE ENSTTRP00000008974/1-595 ILEVSDGIMV ARGDLGIEIP AEKVFLAQKM MIGRCNLAGK PVVCATQMLE bmy_03388T0/1-486 ILEVSDGIMV ARGDLGIEIP AEKVFLAQKM MIGRCNLAGK PVVCATQMLE BACU019579/1-599 ILEVSDGIMV ARGDLGIEIP AEKVFLAQKM MIGRCNLAGK PVVCATQMLE 401 450 ENSBTAP00000044193/1-526 SMITKPRPTR AETSDVANAV LDGADCIMLS GETAKGNFPV EAVKMQHAIA ENSP00000339933/1-574 SMITKPRPTR AETSDVANAV LDGADCIMLS GETAKGNFPV EAVKMQHAIA ENSTTRP00000008974/1-595 SMITKPRPTR AETSDVANAV LDGADCIMLS GETAKGNFPV EAVKMQHAIA bmy_03388T0/1-486 SMITKPRPTR AETSDVANAV LDGADCIMLS GETAKGNFPV EAVKMQHAIA BACU019579/1-599 SMITKPRPTR AETSDVANAV LDGADCIMLS GETAKGNFPV EAVKMQHAIA 451 500 ENSBTAP00000044193/1-526 REAEAAVYHR QLFEELRRAA PLSRDPTEVT AIGAVEAAFK CCAGAIIVLT ENSP00000339933/1-574 REAEAAVYHR QLFEELRRAA PLSRDPTEVT AIGAVEAAFK CCAAAIIVLT ENSTTRP00000008974/1-595 REAEAAVYHR QLFEELRRAA PLSRDPTEVT AIGAVEAAFK CCAAAIIVLT bmy_03388T0/1-486 REAEAAVYHR QLFEELRRAA PLSRDPTEVT AIGAVEAAFK CCAAAII--- BACU019579/1-599 REAEAAVYHR QLFEELRRAA PLSRDPTEVT AIGAVEAAFK CCAAAIIVLT 501 550 ENSBTAP00000044193/1-526 TTGRSAQLLS RYRPRATVIA VTRSAQAARQ AHLCRGVFPV LYREPPEDIW ENSP00000339933/1-574 TTGRSAQLLS RYRPRAAVIA VTRSAQAARQ VHLCRGVFPL LYREPPEAIW ENSTTRP00000008974/1-595 TTGRSAQLLS RYRPRAAVIA VTRSAQAARQ AHLCRGVFPV LYREPPEAIW bmy_03388T0/1-486 ---------- ---------- ------AARQ AHLCRGVFPV LYLEPPEAIW BACU019579/1-599 TTGRSAQLLS RYRPRAAVIA VTRSAQAARQ AHLCRGVFPV LYLEPPEAIW 551 600 ENSBTAP00000044193/1-526 ADDVDRRVQF GIDNGKLCGF LSSGDLVIVV TGWQPGSGHT NIMRVLSVT ENSP00000339933/1-574 ADDVDRRVQF GIESGKLRGF LRVGDLVIVV TGWRPGSGYT NIMRVLSIS ENSTTRP00000008974/1-595 ADDVDRRVQF GIESGKLRGF LRFGDLVIVV TGWRPGSGYT NIMRVLSVT bmy_03388T0/1-486 ADDVDRRVQF GIESGKLRGF LHFGDLVIVV TGWRPGSGYT NIMRVLSVT BACU019579/1-599 ADDVDRRVQF GIESGKLRGF LRFGDLVIVV TGWRPGSGYT NIMRVLSVT