KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:55:07 2014 Check: 00 .. Name: ENSP00000350049/1-550 Len: 683 Check: 9028 Weight: 1.00 Name: ENSBTAP00000043718/1-536 Len: 683 Check: 3243 Weight: 1.00 Name: bmy_13922T0/1-544 Len: 683 Check: 371 Weight: 1.00 Name: BACU008649/1-678 Len: 683 Check: 7704 Weight: 1.00 // 1 50 ENSP00000350049/1-550 ---------- ---------- ---------- ---------- -----MVRGW ENSBTAP00000043718/1-536 ---------- ---------- ---------- ---------- -----SDRAV bmy_13922T0/1-544 ---------- ---------- ---------- ---------- -----MVRGW BACU008649/1-678 MSRERPPRTD IPRNLSFIAA LTERAYYRSQ RPSLEEEPEE EPGEGGTRLL 51 100 ENSP00000350049/1-550 EPPPG----- ------LDC- ---------- ---------- ---------- ENSBTAP00000043718/1-536 SLLIT----- ---------- ---------- ---------- ---------- bmy_13922T0/1-544 EPPPG----- ------PDC- ---------- ---------- ---------- BACU008649/1-678 RPPAGGSGTR VPHSRSPDTR KRVRFADALG LELAAVRRFR PGELPRVPRH 101 150 ENSP00000350049/1-550 ---------- ---------- ---------- ---------- ------AISE ENSBTAP00000043718/1-536 ---------- ---------- ---------- ---------- ------AISE bmy_13922T0/1-544 ---------- ---------- ---------- ---------- ------AISE BACU008649/1-678 VQVQLQRDAL RHFAPCQTRA RGLQSSRREK REKKQFLIPQ MNKELPAISE 151 200 ENSP00000350049/1-550 GHKSEGTMPP NKEASGLSSS PAGLICLPPI SEELQLVWTQ AAQTSELDSN ENSBTAP00000043718/1-536 GHKSESTMPP NKEASSLNSS PAGLICLPPI SEELQLVWTQ AAQTSELDSN bmy_13922T0/1-544 GHKSESTMPP NKEASGLNSS PAGLICLPPI SEELQLVWTQ AAQTSELDGN BACU008649/1-678 GHKSESTMPP NKEASGLNSS PAGLICLPPI SEELQLVWTQ AAQTSELDGN 201 250 ENSP00000350049/1-550 EHLLKTFSYF PYPSLADIAL LCLRYGLQME KVKTWFMAQR LRCGISWSSE ENSBTAP00000043718/1-536 EHLLQTFSYF PYPSLADIAL LCLRYGLQME KVKTWFMAQR LRCGISWSSE bmy_13922T0/1-544 EHLLQTFSYF PYPSLADIAL LCLRYGLQME KVKTWFMAQR LRCGISWSSE BACU008649/1-678 EHLLQTFSYF PYPSLADIAL LCLRYGLQME KVKTWFMAQR LRCGISWSSE 251 300 ENSP00000350049/1-550 EIEETRARVV YRRDQLHFKS LLSFTHHAGR PPEEVPPPPV PAPEQVGIGI ENSBTAP00000043718/1-536 EIEETRARVV YHRDQLHFKS LLSFTHHAGR PPEEMPPSPV PPPEQVGLGI bmy_13922T0/1-544 EIEETRARVV YHRDQLHFKS LLSFTHHAGR PPEEVPPSPM PPPEQVGLGI BACU008649/1-678 EIEETRARVV YHRDQLHFKS LLSFTHHAGR PPEEVPPSPM PPPEQVGLGI 301 350 ENSP00000350049/1-550 GPPTLSKPTQ TKGLKVEPEE PSQMPPLPQS HQKLKESLMT PGSGAFPYQS ENSBTAP00000043718/1-536 VPLTLSEPTQ MKGLKVEPEE -------SLS HQKAKEPLMV PGSGAFPHQS bmy_13922T0/1-544 VPLTLSEPTQ MKGLKVEPSE PSE----PLS HQKAKEPLMA PGSGAFPHQS BACU008649/1-678 VPLTLSEPTQ MKGLKVEPSE PSE----PLS HQKAKEPLMA PGSVAFPHQS 351 400 ENSP00000350049/1-550 DFWQHLQSSG LSKEQAGRGP NQSHGIGTAS WNHSTTVPQP QARDKPPPIA ENSBTAP00000043718/1-536 QFWQDHQCSG LSKEQAGRCP DQSHSLATAS WNHATAVHQP RARDKPQSIS bmy_13922T0/1-544 QFWQDLQSSG LSKEQAGKGP DQSHGLGTAS CNHSTAVHQP RARDKPPPIS BACU008649/1-678 QFCQDLQSSG LSKEQAGKGP DQSHGLGTAS CNHSTAVHQP RARDKPPPVS 401 450 ENSP00000350049/1-550 LIASSCKEES ASSVTPSSSS TSSSFQVLAN GATAASKPLQ PLGCVPQSVS ENSBTAP00000043718/1-536 LLASSCKKES ASNVTPPSST -SSSFQGLAN GAPATSKPLQ PLGCAPQPLS bmy_13922T0/1-544 LLASSCKKES ASNVTPPSST SSSSFQVLAN GATATSKPLQ PLGCIPQPLS BACU008649/1-678 LPASSCKKES ASNVTPPSST SSSSFQVLAN GATATSKPLQ PLGCIPQPLS 451 500 ENSP00000350049/1-550 PSEQALPPHL EPAWPQGLRH NSVPGRVGPT EYLSPDMQRQ RKTKRKTKEQ ENSBTAP00000043718/1-536 PNEQALPPQL EPAWPQGLRH NSASGRIGPA EYLSPDMQRQ RKTKRKTKEQ bmy_13922T0/1-544 PNEQALRPQL EPAWPQGLRH NSAPGRVGPA EYLSPDMQRQ RKTKRKTKEQ BACU008649/1-678 PNEQALRPQL EPAWPQGLRH NSAPGRVGPA EYLSPDMQRQ RKTKRKTKEQ 501 550 ENSP00000350049/1-550 LAILKSFFLQ CQWARREDYQ KLEQITGLPR PEIIQWFGDT RYALKHGQLK ENSBTAP00000043718/1-536 LAILKSFFLQ CQWARREDYH KLEQITGLPR PEIIQWFGDT RYALKHGQLK bmy_13922T0/1-544 LAILKSFFLQ CQWARREDYH KLEQITGLPR PEIIQWFGDT RYALKHGQLK BACU008649/1-678 LAILKSFFLQ CQWARREDYH KLEQITGLPR PEIIQWFGDT RYALKHGQLK 551 600 ENSP00000350049/1-550 WFRDNAVPGA PSFQDPAIPT PPPSTRSLNE RAETPPLPIP PPPPDIQPLE ENSBTAP00000043718/1-536 WFRDNAVPGA PSFQDPAVPT PPPSTRSLNE WAETPPLPNP PPPPDIRPLE bmy_13922T0/1-544 WFRDNAVPGA PSFQDPAIPT PPPSTRSLNE WAETPPLPIP PPPPDIRPLE BACU008649/1-678 WFRDNAVPGA PSFQDPAIPT PPPSTRSLNE WAETPPLPIP PPPPDIRPLE 601 650 ENSP00000350049/1-550 RYWAAHQQLR ETDIPQLSQA SRLSTQQVLD WFDSRLPQPA EVVVCLDEEE ENSBTAP00000043718/1-536 RYWATHQQLR ESDIPQLSQA SRLSTQQVLD WFDSRLPEPA EVVVCLDEEE bmy_13922T0/1-544 RYWATHQQLR ESDIPQLSQA SRLSNQQVLD WFDSRLPEPA EVVVCLDEEE BACU008649/1-678 RYWATHQQLR ESDIPQLSQA SRLSTQQVLD WFDSRLPEPA EVVVCLDEEE 651 700 ENSP00000350049/1-550 EEEEEELPED DEEEEEEEEE DDDDDDDDVI IQD ENSBTAP00000043718/1-536 EEEEEELPED G---EEEEEE DDDDDDDDVI IQD bmy_13922T0/1-544 EEEEEELPED D--EDEEEEE EDDDDDDDVI IQD BACU008649/1-678 EEEEEELPED D-EDEEEEEE DDDDDDDDVI IQD