KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:48 2014 Check: 00 .. Name: ENSTTRP00000000317/1-403 Len: 453 Check: 4871 Weight: 1.00 Name: ENSP00000340943/1-438 Len: 453 Check: 8343 Weight: 1.00 Name: BACU005838/1-452 Len: 453 Check: 8421 Weight: 1.00 Name: bmy_13578T0/1-411 Len: 453 Check: 7818 Weight: 1.00 Name: ENSBTAP00000043509/1-411 Len: 453 Check: 9571 Weight: 1.00 // 1 50 ENSTTRP00000000317/1-403 ---------- ---------- ---------- AAGPSQAPRD QPVWMLLEQY ENSP00000340943/1-438 MRGPSGPPGL LYVPHLLLCL LCLLPPPLQY AAGQSQMPKD QPLWALLEQY BACU005838/1-452 MGGPAGPPRL LHAPHPLLCL LCLLPPLLR- VAGPSQAPRD QPVWMLLEQY bmy_13578T0/1-411 -----MDAAL LHSLLEANCS LELAEELLLD GWGLPLDPE- ---------- ENSBTAP00000043509/1-411 -----MDAAL LHSLLETNCS LELAEELVLD GWGLPLHPE- ---------- 51 100 ENSTTRP00000000317/1-403 CHAVMTLTNL SGPYSYCNTT LDQIGTCWPR SAAGALVERQ CPEYFIGVKY ENSP00000340943/1-438 CHTIMTLTNL SGPYSYCNTT LDQIGTCWPR SAAGALVERP CPEYFNGVKY BACU005838/1-452 CHAITTLTNL SGPYSYCNTT LDQIGTCWPR SAAGALVERQ CPEYFNGVKY bmy_13578T0/1-411 ---------- -GPYSYCNTT LDQIGTCWPR SAAGALVERQ CPEYFNGVKY ENSBTAP00000043509/1-411 ---------- -GPYSYCNTT LDQIGTCWPR SSAGALVERP CPEYFNGVKY 101 150 ENSTTRP00000000317/1-403 IKTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXQRKYD-HY -VALNINYL- ENSP00000340943/1-438 NTTRNAYREC LENGTWASKI NYSQCEPILD DKQRKYDLHY RIALVVNYLG BACU005838/1-452 NTTRNAYREC LENGTWASRI NYSQCEPILD DKQRKYDLHY RVALIVNYLG bmy_13578T0/1-411 NTTRNAYREC LENGTWASRI DYSQCAPILD DKQRKYDLHY HVALIVNYLG ENSBTAP00000043509/1-411 NTTRNAYREC LENGTWASRI NYSQCEPILD DKQRKYDLHY RIALIVNYLG 151 200 ENSTTRP00000000317/1-403 HCVSVA--LV AFMLFLNMQS IRCLRNVIHW NLITTFILRN VTWFLLQLID ENSP00000340943/1-438 HCVSVAALVA AFLLFLALRS IRCLRNVIHW NLITTFILRN VMWFLLQLVD BACU005838/1-452 HCVSVAALVA AFLLFLALRS IRCLRNVIHW NLITTFILRN VMWFLLQLID bmy_13578T0/1-411 HCVSVAALVA AFLLFLALRS IRCLRNVIHW NLITTFILRN VMWFLLQLID ENSBTAP00000043509/1-411 HCVSVAALVG AFLLFLALRS IRCLRNVIHW NLITTFILRN VMWFLLQLID 201 250 ENSTTRP00000000317/1-403 HEVHESNE-- ---------- ---VWCRCIT TSFNYFVVTN FFWMFVEGCY ENSP00000340943/1-438 HEVHESNE-- ---------- ---VWCRCIT TIFNYFVVTN FFWMFVEGCY BACU005838/1-452 HEVHESNEVS GERQPLTAAC PVQVWCRCIT TSFNYFVVTN FFWMFVEGCY bmy_13578T0/1-411 HEVHESNE-- ---------- ---VWCRCIT TSFNYFVVTN FFWMFVEGCY ENSBTAP00000043509/1-411 HEVHESNE-- ---------- ---VWCRCIT TIFNYFVVTN FFWMFVEGCY 251 300 ENSTTRP00000000317/1-403 LHTAIVMTYS TDRLRKRLFL FIGWCIPCPI IIAWAIGKLY YENEQCWFGK ENSP00000340943/1-438 LHTAIVMTYS TERLRKCLFL FIGWCIPFPI IVAWAIGKLY YENEQCWFGK BACU005838/1-452 LHTAIVMTYS TDRLRKRLFL FIGWCVPCPI IIAWAIGKLY YENEQCWFGK bmy_13578T0/1-411 LHTAIVMTYS TDRLRKRLFL FIGWCVPCPI IIAWAIGKLY XENEQCWFGK ENSBTAP00000043509/1-411 LHTAIVMTYS TERLRKWLFL FIGWCVPCPI VIAWAIGKLY YENEQCWFGK 301 350 ENSTTRP00000000317/1-403 EPGDLVDYIY QGPIILVLLI NFVFLFNIVR ILMTKLRAST TSETIQYRKA ENSP00000340943/1-438 EPGDLVDYIY QGPIILVLLI NFVFLFNIVR ILMTKLRAST TSETIQYRKA BACU005838/1-452 EPGDLVDYIY QGPIILVLLI NFVFLFNIVR ILMTKLRAST TSETIQYRKA bmy_13578T0/1-411 EPGDLVDYIY QGPIILVLLI NFVFLFNIVR ILMTKLRAST TSETIQYRKA ENSBTAP00000043509/1-411 EPGDLVDYIY QGPIILVLLI NFIFLFNIVR ILMTKLRAST TSETIQYRKA 351 400 ENSTTRP00000000317/1-403 VKATLVLLPL LGVTYMLFFV SPGEDELSQI VFIYFNSFLQ SFQGFFVSVF ENSP00000340943/1-438 VKATLVLLPL LGITYMLFFV NPGEDDLSQI MFIYFNSFLQ SFQGFFVSVF BACU005838/1-452 VKATLVLLPL LGITYMLFFV NPGEDELSQI VFIYFNSFLQ SFQGFFVSVF bmy_13578T0/1-411 VKATLVLLPL LGITYMLFFV NPGEDELSQI VFIYFNSFLQ SFQGFFVSVF ENSBTAP00000043509/1-411 VKATLVLLPL LGITYMLFFV NPGEDELSQI VFIYFNSFLQ SFQGFFVSVF 401 450 ENSTTRP00000000317/1-403 YCFFNGEVRS AVKKKWHRWQ DRHSLRVPGA RAVSIPTSPT RVSFHSIKQT ENSP00000340943/1-438 YCFFNGEVRS AVRKRWHRWQ DHHSLRVPMA RAMSIPTSPT RISFHSIKQT BACU005838/1-452 YCFFNGEVRS AVRKKWHRWQ DHHSLRVPVA RAVSIPTSPT RISFHSIKQT bmy_13578T0/1-411 YCFLNGEVRS AVRKKWHRWQ DHHSLRVPVA RAVSIPTSPT RISFHSIKQT ENSBTAP00000043509/1-411 YCFFNGEVRS AVRKRWHRWQ DHHSLRVPVA RAMSIPTSPT RISFHSIKQT 451 500 ENSTTRP00000000317/1-403 AAV ENSP00000340943/1-438 AAV BACU005838/1-452 AAV bmy_13578T0/1-411 AAV ENSBTAP00000043509/1-411 ATV