KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:21 2014 Check: 00 .. Name: ENSTTRP00000000553/1-1171 Len: 1343 Check: 4475 Weight: 1.00 Name: ENSP00000459943/1-1211 Len: 1343 Check: 8152 Weight: 1.00 Name: ENSBTAP00000043087/1-1178 Len: 1343 Check: 7890 Weight: 1.00 Name: bmy_00214T0/1-1020 Len: 1343 Check: 2747 Weight: 1.00 Name: BACU006945/1-1323 Len: 1343 Check: 7495 Weight: 1.00 // 1 50 ENSTTRP00000000553/1-1171 ---------- ---------- ---------- ---------- ---------- ENSP00000459943/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043087/1-1178 ---------- ---------- ---------- ---------- ---------- bmy_00214T0/1-1020 ---------- ---------- ---------- ---------- ---------- BACU006945/1-1323 MVTLFMQVII TGDELNKNPV EGFSAGLIDD NDLYRWEVLI IGPPDTLYEG 51 100 ENSTTRP00000000553/1-1171 ---------- ---------- ---------- ---------- ---------- ENSP00000459943/1-1211 ---------- -----MPTPR DCGRLRSRAG RSRAGAACSR GAPRAAREAL ENSBTAP00000043087/1-1178 ---------- ---------- ---------- ---------- ---------- bmy_00214T0/1-1020 ---------- ---------- ---------- ---------- ---------- BACU006945/1-1323 GVFKAHLTFP KDYPLRPPKM KFITEIWHPN VDKNGDVCIS ILHEPGEDKY 101 150 ENSTTRP00000000553/1-1171 ---------- ---------- ---------- ---------- ---------- ENSP00000459943/1-1211 DCRRCRD--- ---------- ---------- ---------- ---------- ENSBTAP00000043087/1-1178 ---------- ---------- ---------- ---------- ---------- bmy_00214T0/1-1020 ---------- ---------- ---------- ---------- ---------- BACU006945/1-1323 GYEKPEERWL PIHTVETIMI SVISMLADPN GDSPANVDAA IELVTLHQIK 151 200 ENSTTRP00000000553/1-1171 ---------- -MAEEEVAKL EKHLMLLRQE YVKLQKKLAE TEKRCTLLAA ENSP00000459943/1-1211 ---------- -AGGKEVAKL EKHLMLLRQE YVKLQKKLAE TEKRCALLAA ENSBTAP00000043087/1-1178 ---------- -SLAEEVAKL EKHLMLLRQE YVKLQKKLAE TEKRCTLLAA bmy_00214T0/1-1020 ---------- ---------- ----MLLRQE YVKLQKKLAE TEKRCTLLAA BACU006945/1-1323 IVHFLEDCKP QRDSEEVAKL EKHLMLLRQE YVKLQKKLAE TEKRCTLLAA 201 250 ENSTTRP00000000553/1-1171 QANKESSKES FISRLLTIVA DLYEQEQYSD LKIKVGGRHI NAHKFVLAAR ENSP00000459943/1-1211 QANKESSSES FISRLLAIVA DLYEQEQYSD LKIKVGDRHI SAHKFVLAAR ENSBTAP00000043087/1-1178 QAKKESSSES FISRLLTIVA DLYEQEQYSD LKIKVGSRHI NAHKFVLAAR bmy_00214T0/1-1020 QANKESSKES FISRLLTIVA DLYEQEQYSD LKIKVGGRHI NAHKFVLAAR BACU006945/1-1323 QANKESSKES FISRLLTIVA DLYEQEQYSD LKIKVGGRRI NAHKFVLAAR 251 300 ENSTTRP00000000553/1-1171 SDSWSLASLS STEELDLS-X XXXXXXMTML RWIYTDELEF REDDVFLTEL ENSP00000459943/1-1211 SDSWSLANLS STKELDLS-D ANPEVTMTML RWIYTDELEF REDDVFLTEL ENSBTAP00000043087/1-1178 SDSWSLASLS STEELDLSAD ANPEVTMTML RWIYTDELEF KEDDVFLTEL bmy_00214T0/1-1020 SDSWSLASLS STEELDLS-- ---------- ---------- ---------- BACU006945/1-1323 SDSWSLASLS STEELDLS-D ANPEVTMTML RWIYTDELEF REDDVFLTEL 301 350 ENSTTRP00000000553/1-1171 MKLANRFQLQ LLRERCEKGV MSLVNVRNCI RFYQTAEELN ASTLMNYCAE ENSP00000459943/1-1211 MKLANRFQLQ LLRERCEKGV MSLVNVRNCI RFYQTAEELN ASTLMNYCAE ENSBTAP00000043087/1-1178 MKLANRFQLQ LLRERCEKGV MSLVNVRNCI RFYQTAEELN ASTLMNYCAE bmy_00214T0/1-1020 ---------- ---------- -ALSAFPPCT VFHGVCT--- -------CSV BACU006945/1-1323 MKLAN----- ----RCEKGV MSLVNVRNCI RFYQTAEELN ASTLMNYCAE 351 400 ENSTTRP00000000553/1-1171 IIASHWDDLR KEDFSSMSAQ LLYKMIKSKT EYPLHKAIKV EREDVVFLYL ENSP00000459943/1-1211 IIASHWDDLR KEDFSSMSAQ LLYKMIKSKT EYPLHKAIKV EREDVVFLYL ENSBTAP00000043087/1-1178 IIASHWDDLR KEDFSSMSAQ LLYKMIKSKT EYPLHKAIKV EREDVVFLYL bmy_00214T0/1-1020 I--------- ---------- ---------- ---------- ---------- BACU006945/1-1323 IIASHWDDLR KEDFSSMSAQ LLYKMIKSKT EYPLHKAIKV EREDVVFLYL 401 450 ENSTTRP00000000553/1-1171 IEMDSQLPGK LNELDHNGDL ALDLALSRRL ESIATTLVSH KADVDMVDKN ENSP00000459943/1-1211 IEMDSQLPGK LNEADHNGDL ALDLALSRRL ESIATTLVSH KADVDMVDKS ENSBTAP00000043087/1-1178 IEMDSQLPGK LNELDHNGDL ALDLALSRRL ESIATTLVNH KADVDMVDKN bmy_00214T0/1-1020 -----PLPGK LNELDHNGDL ALDLALSRRL ESIATTLVSH KADVDMVGKN BACU006945/1-1323 IEMDSQLPGK LNELDHNGDL ALDLALSRRL ESIATTLVSH KADVDMVGKN 451 500 ENSTTRP00000000553/1-1171 GWSLLHKGIQ RGDLFAATFL IKNGALVNAA TLGVQETPLH LVASYSSKKH ENSP00000459943/1-1211 GWSLLHKGIQ RGDLFAATFL IKNGAFVNAA TLGAQETPLH LVALYSSKKH ENSBTAP00000043087/1-1178 GWSLLHKGIQ RGDLFAATFL IKNGALVNAA TLGAQETPLH LVASYNSKKH bmy_00214T0/1-1020 GWSLLHKGIQ RGDLFAATFL IKNGALVNAA TLGAQETPLH LVASYSSKKH BACU006945/1-1323 GWSLLHKGIQ RGDLFAATFL IKNGALVNAA TLGAQETPLH LVASYSSKKH 501 550 ENSTTRP00000000553/1-1171 SADVMSEMAQ IAEALLQAGA NPNMQDSKGR SPLHLSIMAR NEYVFNQLLQ ENSP00000459943/1-1211 SADVMSEMAQ IAEALLQAGA NPNMQDSKGR TPLHVSIMAG NEYVFSQLLQ ENSBTAP00000043087/1-1178 SAAVMSEMAQ LTEALLQAGA NPNMQDSKGR TPLHLSIMAR NEYVFNQLLQ bmy_00214T0/1-1020 SADVMSEMAQ IAEALLQAGA NPNMQDSKGR SPLHLSIMAR NEYVFNQLLQ BACU006945/1-1323 SADVMSEMAQ IAEALLQAGA NPNVQDSKGR SPLHLSIMAR NEYVFNQLLQ 551 600 ENSTTRP00000000553/1-1171 CKQLDLELKD HEGSTALWLA VQYITVSSDQ SVNPFEDLPV VNGTSFDENS ENSP00000459943/1-1211 CKQLDLELKD HEGSTALWLA VQHITVSSDQ SVNPFEDVPV VNGTSFDENS ENSBTAP00000043087/1-1178 CKQLDLELKD HEGSTALWLA VQYITVSSDQ SVNPFEDLPV VNGTSSDPKN bmy_00214T0/1-1020 CKQLDLELKD HEGSTALWLA VQYITMSSDQ SVNPFEDLPV VNGTSFDENS BACU006945/1-1323 CKQLDLELKD REGSTALWLA VQYITVSSDQ SVNPFEDPPV VNGTSFDENS 601 650 ENSTTRP00000000553/1-1171 FAARLIQRGS NTNAPDAITG ----NCLLQR AAEAGNEAAA LFLATNGAHV ENSP00000459943/1-1211 FAARLIQRGS HTDAPDTATG ----NCLLQR AAGAGNEAAA LFLATNGAHV ENSBTAP00000043087/1-1178 FSSQCLENGY LPQRFSEMTS QPSRNCLLQR AAEAGNEAAA LFLATNGAHV bmy_00214T0/1-1020 FAARLIQRGS NTNAPDTIT- ---------- ---------- --------DL BACU006945/1-1323 FAARLIQRGS NTNAPDTITG ----NCLLQQ AAEAGNEAAA LFLATNGAHV 651 700 ENSTTRP00000000553/1-1171 NHRNKW---G ETPLHTACRR GLANLTAELL QQGANPNLQT EEALPSPKQP ENSP00000459943/1-1211 NHRNKW---G ETPLHTACRH GLANLTAELL QQGANPNLQT EEALPLPKEA ENSBTAP00000043087/1-1178 NHRNKW---G ETPLHTACRH GLANLTAELL QQGANPNLQT EEALPSPKEA bmy_00214T0/1-1020 NVTYVWCGLG ETPLHTACRH GLANLTVELL QQGANPNLQT EEALPSPKEP BACU006945/1-1323 NHRNKW---G ETPLHTACRH GLANLTAELL QQGANPNLQT EEALPSPKEP 701 750 ENSTTRP00000000553/1-1171 ASLPSSADSS VYLQTPLHMA IAYNHPDVVS VILEQK---A NALHATNNLQ ENSP00000459943/1-1211 ASLTSLAD-S VHLQTPLHMA IAYNHPDVVS VILEQK---A NALHATNNLQ ENSBTAP00000043087/1-1178 MSLPSSADSS VYLQTPLHMA IAYNHPDVVS VILEQKENVA NALHATNNLQ bmy_00214T0/1-1020 ASLPSSADSS VYLQTPLHMA IAYNHPDVVS VILEQK---A NALHATNNLQ BACU006945/1-1323 ASLPSSADSS VSLQTPLHMA IAYNHPDVVS VILEQK---A NALHATNNLQ 751 800 ENSTTRP00000000553/1-1171 IIPDFSLKDS RDQTVLGLAL WTGMHTIAAQ LLGSGACIND TMSDGQTLLH ENSP00000459943/1-1211 IIPDFSLKDS RDQTVLGLAL WTGMHTIAAQ LLGSGAAIND TMSDGQTLLH ENSBTAP00000043087/1-1178 IIPDFSLKDS RDQTVLGLAL WTGMHTIAAQ LLGSGACIND TMSDGQTLLH bmy_00214T0/1-1020 IIPDFSLKDS RDQTVLGLAL WTGTHTIAAQ LLGSGACIND TMSDGQTLLH BACU006945/1-1323 IIPDFSLKDS RDQTVLGLAL WTGMHTIAAQ LLGSGACISD TMSDGQTLLH 801 850 ENSTTRP00000000553/1-1171 MAMQRQDSKS ALFLLEHQAD INVSRTXXXX XXXXXXXXXX XXXXVDAICT ENSP00000459943/1-1211 MAIQRQDSKS ALFLLEHQAD INV-RTQDGE TALQLAIRNQ LPLVVDAICT ENSBTAP00000043087/1-1178 MAMQRQDSKS ALFLLEHQAD INV-RTQDGE TALQLAIRNQ LPLVVDAICT bmy_00214T0/1-1020 MAMQRQDSKS ALFLLEHQAD INVSRTQDGE TALQLAIRNQ LPLVVDAICT BACU006945/1-1323 MAMQRQDSKN ALFLLEHQAD INVSRTQDGE TALQLAIRNQ LPLVVDAICT 851 900 ENSTTRP00000000553/1-1171 RGADMSVPDE KGNPPLWLAL ADNLEDIAST LVRHGCDATC WGPGPSGCLQ ENSP00000459943/1-1211 RGADMSVPDE KGNPPLWLAL ANNLEDIAST LVRHGCDATC WGPGPGGCLQ ENSBTAP00000043087/1-1178 RGADMSVPDE QGNPPLWLAL ANNLEDIAST LVRHGCDATC WGPGPSGCLQ bmy_00214T0/1-1020 RGADMSVPDE KGNPPLWLAL ANNLEDIAST LVRHGCDATC WGPGPSGCLQ BACU006945/1-1323 RGADMSVPDE KGNPPLWLAL ADNLEDIAST LVRHGCDATC WGPGPSGCLQ 901 950 ENSTTRP00000000553/1-1171 TLLHRAIDGN DESTACFLIR SGCDVNSPRQ PGANGEGEEE ARDGQTPLHL ENSP00000459943/1-1211 TLLHRAIDEN NEPTACFLIR SGCDVNSPRQ PGANGEGEEE ARDGQTPLHL ENSBTAP00000043087/1-1178 TLLHRAIDEN NEPITCFLIR SGCDVNSPRQ PGANGEGEEE ARDGQTPLHL bmy_00214T0/1-1020 TLLHRAIDGN NESIACFLIR SGCDVNSPRQ PGANGEGEEE ARDGQTPLHL BACU006945/1-1323 TLLHRAIDGN NESIACFLIR SGCDVNSPRQ PGANGEGEEE ARDGQTPLHL 951 1000 ENSTTRP00000000553/1-1171 AASWGLEETI QCLLEFGANV NAQDAEGRTP VHVAISNQHG VIIQLLISHP ENSP00000459943/1-1211 AASWGLEETV QCLLEFGANV NAQDAEGRTP IHVAISSQHG VIIQLLVSHP ENSBTAP00000043087/1-1178 AASWGLEETV QCLLEFGANV NAQDAEGRTP VHVAISNQHS VIIQLLISHP bmy_00214T0/1-1020 AASWGLEETI QCLLEFGANV NAQDAEGRTP VHVAISNQHG VIIQLLISHP BACU006945/1-1323 AASWGLEETI QCLLEFGANV NAQDAEGRTP VHVAISNQHG VIIQLLISHP 1001 1050 ENSTTRP00000000553/1-1171 DIHLNVRDRQ GLTPFACAMT YKNNKAAEAI LKRESGAAEQ VDNKGRNFLH ENSP00000459943/1-1211 DIHLNVRDRQ GLTPFACAMT FKNNKSAEAI LKRESGAAEQ VDNKGRNFLH ENSBTAP00000043087/1-1178 DIHLNVRDRQ GLTPFACAMT YKNNKAAEAI LKRESGAAEQ VDNKGRNFLH bmy_00214T0/1-1020 DIHLNVRDRQ GLTPFACAMT YKNNKAAEAI LKRESGAAEQ VDNKGRNFLH BACU006945/1-1323 DIHLNVRDRQ GLTPFACAMT YKNNKAAEAI LKRESGAAEQ VDNKGRNFLH 1051 1100 ENSTTRP00000000553/1-1171 VAVQNSDIES VLFLISVQAN VNSRVQDASK LTPLHLAVQA GSEIIVRNLL ENSP00000459943/1-1211 VAVQNSDIES VLFLISVHAN VNSRVQDASK LTPLHLAVQA GSEIIVRNLL ENSBTAP00000043087/1-1178 VAVQNSDIES VLFLISVQAN VNSRVQDASK LTPLHLAVQA GSEIIVRNLL bmy_00214T0/1-1020 VAVQNSDIES VLFLISVQAH VNSRVQDASK LTPLHLAVQA GSEIIVRNLL BACU006945/1-1323 VAVQNSDIES VLFLISVQAN VNSRVQDASK LTPLHLAVQA GSEIIVRNLL 1101 1150 ENSTTRP00000000553/1-1171 LAGAKVNELT KHRQTALHLA AQQDLPTICS VLLENGVDFA AVDENGNNAL ENSP00000459943/1-1211 LAGAKVNELT KHRQTALHLA AQQDLPTICS VLLENGVDFA AVDENGNNAL ENSBTAP00000043087/1-1178 LAGAKVNELT KHRQTALHLA AQQDLPTICS VLLENGVDFA AVDENGNNAL bmy_00214T0/1-1020 LAGAKVNELT KHRQTALHLA AQQDLPTICS VLLENGVDFA AVDENGNNAL BACU006945/1-1323 LAGAKVNELT KHRQTALHLA AQQDLPTICS VLLENGVDFA AVDENGNNAL 1151 1200 ENSTTRP00000000553/1-1171 HLAVMHGRLN NIRVLLTECT VDAEAFNLRG QSPLHILGQY GKENAAAIFD ENSP00000459943/1-1211 HLAVMHGRLN NIRVLLTECT VDAEAFNLRG QSPLHILGQY GKENAAAIFD ENSBTAP00000043087/1-1178 HLAVMHGRLN NIRVLLTECT VDAEAFNLRG QSPLHILGQY GKENAAAIFD bmy_00214T0/1-1020 HLAVMHGRLN NIRVLLTECT VDAEAFNLRG QSPLHILGQY GKENAAAIFD BACU006945/1-1323 HLAVMHGRLN NIRVLLTECT VDAEAFNLRG QSPLHILGQY GKENAAAIFD 1201 1250 ENSTTRP00000000553/1-1171 LFLECMPEYP LDKPDAEGNT VLLLAYMKGN ANLCRAVVRS GARLGVNNNQ ENSP00000459943/1-1211 LFLECMPGYP LDKPDADGST VLLLAYMKGN ANLCRAIVRS GARLGVNNNQ ENSBTAP00000043087/1-1178 LFLECMPEYP LDKPDAEGNT VLLLAYMKGN ANLCRAIVRS GARLGVNNNQ bmy_00214T0/1-1020 LFLECMPEYP LDKPDAEGNT VLLLAYMKGN ANLCRAVVRS GARLGVNNSQ BACU006945/1-1323 LFLECMPEYP LDKPDAEGNT VLLLAYMKGN ANLCRAVVRS GARLGVNNNQ 1251 1300 ENSTTRP00000000553/1-1171 GVNIFNYQVA TKQLLFRLLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000459943/1-1211 GVNIFNYQVA TKQLLFRLLD MLSKEPPWCD GSYCYECTAR FGVTTRKHHC ENSBTAP00000043087/1-1178 GVNIFNYQVA TKQLLFRLLD MLSKEPPWCD GSNCYECTAK FGVTTRKHHC bmy_00214T0/1-1020 GVNIFNYQVA TKQLLFRLLD MLSREPPWCD GSNCYECTAK FGVTTRKHHC BACU006945/1-1323 GVNIFNYQVA TKQLLFRLLD MLSKEPPWCD GSNCYECTAK FGVTTRKHHC 1301 1350 ENSTTRP00000000553/1-1171 RHCGRLLCHK CSTKEIPIIK FDLNKPVRVC NICFDVLTLG GVS ENSP00000459943/1-1211 RHCGRLLCHK CSTKEIPIIK FDLNKPVRVC NICFDVLTLG GVS ENSBTAP00000043087/1-1178 RHCGRLLCHK CSTKEIPIIK FDLNKPVRVC NICFDVLTLG GVS bmy_00214T0/1-1020 RHCGRLLCHK CSTKEIPIIK FDLNKPVRVC NICFDVLTLG GVS BACU006945/1-1323 RHCGRLLCHK CSTKEIPIIK FDLNKPVRVC NICFDVLTLG GVS