KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:15 2014 Check: 00 .. Name: ENSTTRP00000006524/1-1150 Len: 1317 Check: 5987 Weight: 1.00 Name: ENSP00000418081/1-1150 Len: 1317 Check: 6913 Weight: 1.00 Name: bmy_15927T0/1-1023 Len: 1317 Check: 4030 Weight: 1.00 Name: BACU002372/1-1010 Len: 1317 Check: 7616 Weight: 1.00 Name: ENSBTAP00000042974/1-937 Len: 1317 Check: 6175 Weight: 1.00 // 1 50 ENSTTRP00000006524/1-1150 MAVPVRTCGA SLPGPARTAL SWPGRGSRPG LSARRPAARP PRPLSLLLPP ENSP00000418081/1-1150 MAVPARTCGA SRPGPARTAR PWPGCGPHPG PGTRRPTSGP PRPLWLLLP- bmy_15927T0/1-1023 -------MDQ ACADKRLREP CWEGAQEART GTVGTGLGG- --QRW----- BACU002372/1-1010 ---------- ---------- ---------- ----MPLSP- --RFW----- ENSBTAP00000042974/1-937 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006524/1-1150 LLLLPLLAAP GASAYSFPQQ HTXXXXXXXX XXXXXXXXXX XXXXXXXXXI ENSP00000418081/1-1150 --LLPLLAAP GASAYSFPQQ HTMQHWARRL EQEVDGVMRI FGGVQQLREI bmy_15927T0/1-1023 --------AV GTSFW--ALS KL-------- ---------- ---------- BACU002372/1-1010 --------PP CLQFYPTPLH HF-------- ---------- ---------- ENSBTAP00000042974/1-937 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006524/1-1150 YKDNRNLFEV QENEPQKLVE KVAGDIESLL DRKVQALKRL ADAAENFQKA ENSP00000418081/1-1150 YKDNRNLFEV QENEPQKLVE KVAGDIESLL DRKVQALKRL ADAAENFQKA bmy_15927T0/1-1023 ---------- ---------- ---------- -----GAKRL ADAAENFQKA BACU002372/1-1010 ---------- ---------- ---------- -----PALTL PWLGGPFPQ- ENSBTAP00000042974/1-937 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006524/1-1150 HRWQDNIKEE DIVYYDAKAD AELDDPESED VERGSKASTL RLDFVEDSNF ENSP00000418081/1-1150 HRWQDNIKEE DIVYYDAKAD AELDDPESED VERGSKASTL RLDFIEDPNF bmy_15927T0/1-1023 HRWQDNIKEE DIVYYDAKAD AELDDPESED VERGSKASTL RLDFVEDSNF BACU002372/1-1010 ---------- ---------- ---DDPESED VERGSKASTL RLDFIEDSNF ENSBTAP00000042974/1-937 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006524/1-1150 KNKVNYSYTA VQIPTDIYKG STVILNELNW TEALENVFIE NRRQDPTLLW ENSP00000418081/1-1150 KNKVNYSYAA VQIPTDIYKG STVILNELNW TEALENVFME NRRQDPTLLW bmy_15927T0/1-1023 KNKVNYSYTA VQIPTDIYKG S--------- ---------- ---------- BACU002372/1-1010 KNKVNYSYTA VQIPTDIYKG STVILNELNW TEALENVFIE SRRQDPTLLW ENSBTAP00000042974/1-937 ---------- ---------- ATVILNELNW TEALENVFME NRRQDPTLLW 251 300 ENSTTRP00000006524/1-1150 QVFGSATGVT RYYPATPWRA PKKIDLYDVR RRPWYIQGAS SPKDMVIIVD ENSP00000418081/1-1150 QVFGSATGVT RYYPATPWRA PKKIDLYDVR RRPWYIQGAS SPKDMVIIVD bmy_15927T0/1-1023 ---------- -----TPWRA PKKIDLYDVR RRPW------ ---------- BACU002372/1-1010 QVFGSATGVT RYYPATPWRA PKKIDLYDVR RRPWYIQGAS SPKDMVIIVD ENSBTAP00000042974/1-937 QVFGSATGVT RYYPATPWRA PKKIDLYDVR RRPWYIQGAS SPKDMVIIVD 301 350 ENSTTRP00000006524/1-1150 VSGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ ENSP00000418081/1-1150 VSGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ bmy_15927T0/1-1023 -SGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ BACU002372/1-1010 VSGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ ENSBTAP00000042974/1-937 VSGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ 351 400 ENSTTRP00000006524/1-1150 ANVRNKKVFK EAVQGMVAKG TTGYKAGFEY AFDQLQNSNI TRANCNKMIM ENSP00000418081/1-1150 ANVRNKKVFK EAVQGMVAKG TTGYKAGFEY AFDQLQNSNI TRANCNKMIM bmy_15927T0/1-1023 ANVRNKKVFK EAVQGMVAKG TTGYKAGFEY AFDQLQNSNI TRANCNKMIM BACU002372/1-1010 ANVRNKKVFK EAVQGMVAKG TTGYKAGFEY AFDQLQNSNI TRANCNKMIM ENSBTAP00000042974/1-937 ANVRNKKVFK EAVQGMVAKG TTGYKAGFEY AFDQLQNPNI TRANCNKMIM 401 450 ENSTTRP00000006524/1-1150 MFTDGGEDRV QDVFEKYNWP NRTVRVFTFS VGQHNYDVTP LQWMACTNKG ENSP00000418081/1-1150 MFTDGGEDRV QDVFEKYNWP NRTVRVFTFS VGQHNYDVTP LQWMACANKG bmy_15927T0/1-1023 MFTDGGEDRV QDVFEKYNWP NRTVRVFTFS VGQHNYDVTP LQWMACTNKG BACU002372/1-1010 MFTDGGEDRV QDVFEKYNWP NRTVRVFTFS VGQHNYDVTP LQWMACTNKG ENSBTAP00000042974/1-937 MFTDGGEDRV QDVFEKYNWP NRTVRVFTFS VGQHNYDVTP LQWMACTNKG 451 500 ENSTTRP00000006524/1-1150 YYFEIPSIGA IRINT----- ---------- ---------- ---------- ENSP00000418081/1-1150 YYFEIPSIGA IRINT----- ---------- ---------- ---------- bmy_15927T0/1-1023 YYFEIPSIGA IRINTQVRLW GRPSSQPLVF ASRGRGNHGL LCDESAPWWL BACU002372/1-1010 YYFEIPSIGA IRINT----- ---------- ---------- ---------- ENSBTAP00000042974/1-937 YYFEIPSIGA IRINT----- ---------- ---------- ---------- 501 550 ENSTTRP00000006524/1-1150 ---------- ---------- --------QE YLDVLGRPMV LAGKEAKHVQ ENSP00000418081/1-1150 ---------- ---------- --------QE YLDVLGRPMV LAGKEAKQVQ bmy_15927T0/1-1023 IDTWGGRTGK IQWEGQTHDP PPLPPPPPQE YLDVLGRPMV LAGKEAKQVQ BACU002372/1-1010 ---------- ---------- --------QE YLDVLGRPMV LAGKEAKQVQ ENSBTAP00000042974/1-937 ---------- ---------- --------QE YLDVLGRPMV LAGKEAKQVQ 551 600 ENSTTRP00000006524/1-1150 WTNVYEDALX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418081/1-1150 WTNVYEDALG LGLVVTGTLP VFNLTQDGPG EKKNQLILGV MGIDVALNDI bmy_15927T0/1-1023 WTNVYEDALG LGLVVTGTLP VFNLTQDGPG EKKNQLILGV MGIDVALNDI BACU002372/1-1010 WTNVYEDALG LGLVVTGTLP VFNLTQDGPG EKKNQLILGV MGIDVALNDI ENSBTAP00000042974/1-937 WTNVYEDALG LGMVVTGTLP VFNLTQDGPG EKKNQLILGV MGIDVALNDI 601 650 ENSTTRP00000006524/1-1150 XXXXXXXXLG ANGYVFAIDL NGYVLLHPNL KPQTTNFREP VTLDFLDAEL ENSP00000418081/1-1150 KRLTPNYTLG ANGYVFAIDL NGYVLLHPNL KPQTTNFREP VTLDFLDAEL bmy_15927T0/1-1023 KRLTPNYTLG ANGYVFAIDL NGYVLLHPNL KPQTTNFREP VTLDFLDAEL BACU002372/1-1010 KRLTPNYTLG ANGYVFAIDL NGYVLLHPNL KPQTTNFREP VTLDFLDAEL ENSBTAP00000042974/1-937 KRLTPNYTLG ANGYVFAIDL NGYVLLHPNL KPQTTNFREP VTLDFLDAEL 651 700 ENSTTRP00000006524/1-1150 EDENKEEIRR SMIDGNKGHK QIRTLVKSLD ERYIDEVMRN YTWVPIRSTN ENSP00000418081/1-1150 EDENKEEIRR SMIDGNKGHK QIRTLVKSLD ERYIDEVTRN YTWVPIRSTN bmy_15927T0/1-1023 EDENKE---- ---------- ---------- ERYIDEVMRN YTWVPIRSTN BACU002372/1-1010 EDENKEEIRR SMIDGNKGHK QIRTLVKSLD ERYIDEVMRN YTWVPIRSTN ENSBTAP00000042974/1-937 EDENKEEIRR SMIDGNKGHK QIRTLVKSLD ERYIDEVTRN YTWVPIRSTN 701 750 ENSTTRP00000006524/1-1150 YSLGLVLPPY STFYLQANLS DQILQVKLPI SKLKDFEFLL PSSFESVGHV ENSP00000418081/1-1150 YSLGLVLPPY STFYLQANLS DQILQVKLPI SKLKDFEFLL PSSFESEGHV bmy_15927T0/1-1023 YSLGLVLPPY STFYLQANLS DQILQVKY-- -----FEFLL PSSFESEGHV BACU002372/1-1010 YSLGLVLPPY STFYLQANLS DQILQVKY-- -----FEFLP PSSFESEGHV ENSBTAP00000042974/1-937 YSLGLVLPPY STFYLQANLS DQILQVKLPI SKLKDFEFLL PSSFESEGHV 751 800 ENSTTRP00000006524/1-1150 FIAPREYCKE LNASDNNTEF LKNFIELMEK VTPDSKQXXX XXXXXXXXXX ENSP00000418081/1-1150 FIAPREYCKD LNASDNNTEF LKNFIELMEK VTPDSKQCNN FLLHNLILDT bmy_15927T0/1-1023 FIAPREYCKE LNASDNNSEF LKNFIELMEK VTPDSKQCNN FLLHNLILDT BACU002372/1-1010 FIAPREYCKE LNASDNNTEF LKNFIELMEK VTPDSKQCNN FLLHNLILDT ENSBTAP00000042974/1-937 FIAPREYCKD LNASDNNTEF LKNFIELMEK VTPDSKQCNN FLLHNLILDT 801 850 ENSTTRP00000006524/1-1150 XXXXXXXXXX XXXXXXXXXX XXXXXXXXDG GITRVFPNKA AEDWTETPEP ENSP00000418081/1-1150 GITQQLVERV WRDQDLNTYS LLAVFAATDG GITRVFPNKA AEDWTENPEP bmy_15927T0/1-1023 GITQQLVERV WRDQDLNTYS LLAVFAATDG GITRVFPNKA AEDWTETPEP BACU002372/1-1010 GITQQLVERV WRDQDLNTYS LLAVFAATDG GITRVFPNKA AEDWTETPEP ENSBTAP00000042974/1-937 GITQQLVERV WRDQDLNTYS LLAVFATTDG GITRVFPNKA AEDWTENPEP 851 900 ENSTTRP00000006524/1-1150 FNASFYRRSL DNHGYVFKPP QQD------- ---------- ---------- ENSP00000418081/1-1150 FNASFYRRSL DNHGYVFKPP HQD------- ---------- ---------- bmy_15927T0/1-1023 FSASFYRRSL DNHGYVFKPP QQDGECPPRC TAAGGKLRLL CLLGQGEALL BACU002372/1-1010 FNASFYRRSL DNHGYVFKPP QQD------- ---------- ---------- ENSBTAP00000042974/1-937 FNASFYRRSL DNHGYVFKPP QQD------- ---------- ---------- 901 950 ENSTTRP00000006524/1-1150 ---------- ---------- ---------- ---------- ---------- ENSP00000418081/1-1150 ---------- ---------- ---------- ---------- ---------- bmy_15927T0/1-1023 FEVSLKYEAG WLRQTGQIKR GLGCAKRYAG CLVLRLRSAL PWIPGLTGPS BACU002372/1-1010 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000042974/1-937 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000006524/1-1150 ---------- ---------- ARLRPLELEN DTVGILVSTA VELSLGGRTL ENSP00000418081/1-1150 ---------- ---------- ALLRPLELEN DTVGILVSTA VELSLGRRTL bmy_15927T0/1-1023 TEWSCGCQPL LLTTPPHPPT ARLRPLELEN DTVGILVSTA VELSLGGRTL BACU002372/1-1010 ---------- ---------- ARLRPLELEN DTVGILVSTA VELSLGGRTL ENSBTAP00000042974/1-937 ---------- ---------- ALLRPLELEN DTVGILVSTA VELSLGGRTL 1001 1050 ENSTTRP00000006524/1-1150 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQK-CGPNSH CEMDCEVNNE ENSP00000418081/1-1150 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQK-CGPNSH CEMDCEVNNE bmy_15927T0/1-1023 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQKQCGPNSH CEMDCEVNNE BACU002372/1-1010 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQKQCGPNSH CEMDCEVNNE ENSBTAP00000042974/1-937 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQKQCGPNSH CEMDCEVNNE 1051 1100 ENSTTRP00000006524/1-1150 DLLCVLIDDG GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE ENSP00000418081/1-1150 DLLCVLIDDG GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE bmy_15927T0/1-1023 DLLCVLIDDG GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE BACU002372/1-1010 DLLCVLIDDG GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE ENSBTAP00000042974/1-937 DLLCVLIDDG GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE 1101 1150 ENSTTRP00000006524/1-1150 SYDYQAACAP LPPGNLGAAP RGIFVPTIAD FLNLAWWTSA AAWSLFQQLL ENSP00000418081/1-1150 SYDYQAACAP QPPGNLGAAP RGVFVPTVAD FLNLAWWTSA AAWSLFQQLL bmy_15927T0/1-1023 SYDYQAACAP LPPGNLGAAP RGVFVPTIAD FLNLAWWTSA AAWSLFQQLL BACU002372/1-1010 SYDYQAACAP LPPGNLGAAP RGIFVPTIAD FLNLAWWTSA AAWSLFQQLL ENSBTAP00000042974/1-937 SYDYQAACAP LPPGSLGAAP RGIFVPTIAD FLNLAWWTSA AAWSLFQQLL 1151 1200 ENSTTRP00000006524/1-1150 YGLIYHSWFQ ADPAEAEGNP E-RESSCVM- QTQYYFGSVN ASY-AIIDCG ENSP00000418081/1-1150 YGLIYHSWFQ ADPAEAEGSP ETRESSCVMK QTQYYFGSVN ASYNAIIDCG bmy_15927T0/1-1023 YGLIYHSWFQ ADPAEAEGNP EVRESSCVMK QTQYYFGSVN ASYNAIIDCG BACU002372/1-1010 YGLIYHSWFQ ADPAEAEGNP EVRESSCVMK QTQYYFGSVN ASYNAIIDCG ENSBTAP00000042974/1-937 YGLIYHSWFQ ADPAEAEGNP EVRESSCVMK QTQYYFGSVN ASYNAIIDCG 1201 1250 ENSTTRP00000006524/1-1150 NCSXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---XXXXXXX ENSP00000418081/1-1150 NCSRLFHAQR LTNTNLLFVV AEKPLCSQCE AGRLLQKETH ---SDGPEQC bmy_15927T0/1-1023 NCS------- ---------- ---------- ---------- ---------- BACU002372/1-1010 NCSRLFHAQR LTNTNLLFVV AEKPLCSQCE AGRLLQKETH ---SDGPEQC ENSBTAP00000042974/1-937 NCSRLFHAQR LINTNLLFVV AEKPLCSQCE AGRLLQKETH CCPADGPEQC 1251 1300 ENSTTRP00000006524/1-1150 XXXXXXXXXX XXXXXXXXXX XEDTSDCGRG ASFPPSLGVL VSLQLLLLLS ENSP00000418081/1-1150 ELVQRPRYRR GPHICFDYNA TEDTSDCGRG ASFPPSLGVL VSLQLLLLLG bmy_15927T0/1-1023 ---------- ---------- ---------- ---------- ---------- BACU002372/1-1010 ELVQRPRYRR GPHICFDYNA TEDTSDCGRG ASFPPSLGVL VSLQLLLLLS ENSBTAP00000042974/1-937 ELVQRPRYRR GPHICFDYNA TEDTSDCGRG ASFPPSLGVL VSLQLLLLLG 1301 1350 ENSTTRP00000006524/1-1150 LPPRPQPQVH AHPSRRL ENSP00000418081/1-1150 LPPRPQPQVL VHASRRL bmy_15927T0/1-1023 ---------- ------- BACU002372/1-1010 LPPRPQPQVH AHPSRRL ENSBTAP00000042974/1-937 LPPRPQPQVH AHPSRRL