KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:53:53 2014  Check: 00 ..

 Name: ENSP00000310801/1-240     Len:    242  Check:  6504  Weight:  1.00
 Name: ENSTTRP00000005590/1-186  Len:    242  Check:  3734  Weight:  1.00
 Name: bmy_14506T0/1-219         Len:    242  Check:  4878  Weight:  1.00
 Name: ENSBTAP00000042746/1-191  Len:    242  Check:  751  Weight:  1.00

//


                          1                                                   50
ENSP00000310801/1-240     -MPPPAKEGG RKGPRERSGK SAPGTAQGEE RAKGAPATEP PKPGWALTPQ 
ENSTTRP00000005590/1-186  MQPEPAKTAC RV-PRERVGK GAQGAGARVR CAK----AES PTPSWALTPE 
bmy_14506T0/1-219         MQPEPAKGTA RRVPRERAGK GAQGAGARVG CAK----AEP PTLGWALTLE 
ENSBTAP00000042746/1-191  MQPEPAKETR RRGPRERANK GAQGAGARVG RAQ----AEP PKPGWALTLE 


                          51                                                 100
ENSP00000310801/1-240     GLAAMLPAQR HRHLLFGDLL EDVGAAASTF PCGSVEPGYR MPDPRPWTQS 
ENSTTRP00000005590/1-186  GLEAMRPAQR HSHLLFGDLL EDVGAAASVF PSESAELGYR MPDPRAWTLQ 
bmy_14506T0/1-219         GLAAMRPAQR HSHLLFGDLL EDVGAAASVF PSESAELGYR MPDPRAWTLP 
ENSBTAP00000042746/1-191  GLAAMRPAQR HSHLLFGDLL EDVGAATCLF PCESAEVGYR MPDSRAWTLP 


                          101                                                150
ENSP00000310801/1-240     LELPAERQNR LLGVLKAAEA RGRVRALRLR YTRMRAEEIA LLIQRQKSAR 
ENSTTRP00000005590/1-186  LETPAQSQDQ VLGVLKAAEA RGRVRALRLR HARLRDED-- ----GQRKRG 
bmy_14506T0/1-219         LEPPAQRQDR VLGVLKAAEA RGRVRALRLR YARLRAEEVS LLILRQKSAR 
ENSBTAP00000042746/1-191  LEPPAQRQDR LLGVLKAAEA RGRVRALRLR YARMRAEEIS LLIQCQRSAR 


                          151                                                200
ENSP00000310801/1-240     AAIRLELFLP PQLKPARIPD PLDRQEVQTS PGRGGERGGA LPASAHAGPQ 
ENSTTRP00000005590/1-186  SAHPQHLF-- ---------- ---------- ---------- ---------- 
bmy_14506T0/1-219         AALRLELFLP PQLKPTRIPD PLDRQEVLAS PGRAGR---- -------GEP 
ENSBTAP00000042746/1-191  AAIRLELFLP PQLKPTRIPD PLDRQE---- ---------- ---------- 


                          201                                                250
ENSP00000310801/1-240     PLSPAAEARG DHPGGERGWH HLPAVTATES VRRAPASHIK L- 
ENSTTRP00000005590/1-186  ---PAAEARG NHSGGESRWQ HLPALMATHR ARRAPPSYVK FS 
bmy_14506T0/1-219         ALRPAHPAPA PPPPQRRRVE TILEEKVDGS IFPR------ -- 
ENSBTAP00000042746/1-191  ---------- -----RRRVE TILEEKVHGS IFPR------ --