KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:46 2014 Check: 00 .. Name: ENSP00000229179/1-925 Len: 934 Check: 1469 Weight: 1.00 Name: ENSBTAP00000042628/1-930 Len: 934 Check: 9541 Weight: 1.00 Name: ENSTTRP00000014889/1-914 Len: 934 Check: 31 Weight: 1.00 Name: bmy_14380T0/1-884 Len: 934 Check: 436 Weight: 1.00 Name: BACU016442/1-929 Len: 934 Check: 245 Weight: 1.00 // 1 50 ENSP00000229179/1-925 MDRSGFGEIS SPVIREAEVT RTARKQSAQK RVLLQASQDE NFGNTTPRNQ ENSBTAP00000042628/1-930 MDRSGFGEMS SPVIREAEVT RTARKQSAQK RALLRAAQDE IFSNTTPRNQ ENSTTRP00000014889/1-914 MDRSGFEEMA SPVIREAEVT RTARKQSAQK RVLIRASQDE IFANTTPRNQ bmy_14380T0/1-884 MDRSDFGEMS SPVIREAEVT RTARKQSAQK RVLIRASQDE IFANTTPRDQ BACU016442/1-929 MDRSDFGEMS SPVIREAEVT RTARKQSAQK RVLIRASQDE IFANTTPRDQ 51 100 ENSP00000229179/1-925 VIPRTPSSFR QPF-TPTSRS LLRQPDISCI LGTGGKSPRL TQSSGFFGNL ENSBTAP00000042628/1-930 VMPRTPSSFR QPF-TPPSRS LLRQPDISCI LATGGRSPWL TQSSGFLGNL ENSTTRP00000014889/1-914 VIPRTPSSFR QPF-TPTNRS LLRQPDVFCI LGTGGRSPRL TQSSGFLGNL bmy_14380T0/1-884 VIPRTPSSFR QPLVTPTNRS LLRQPDVFCI LGTGGRSPRL TQSSGFLGNL BACU016442/1-929 VIPRTPSSFR QPLVTPTNRS LLRQPDVFCI LGTGGRSPRL TQSSGFLGNL 101 150 ENSP00000229179/1-925 SMVTNLDDSN WAAAFSSQRS GLFTNTEPHS ITEDVTISAV MLREDDPGEA ENSBTAP00000042628/1-930 SMVTNLDDSN WATAFSSQRA GLFTNAEPHS VTEDVTLSAV MLREDDPGEA ENSTTRP00000014889/1-914 SMVTNLDDSN WAAAFSSQRA GLFTNTELHS VTEDVTLSAV MLREDDPGEA bmy_14380T0/1-884 SMVTNLDDSN WAAAFSSQRA GLFTNTEPHS VTEDVTLSAV MLREDDPGEA BACU016442/1-929 SMVTNLDDSN WAAAFSSQRA GLFTNTEPHS VTEDVTLSAV MLREDDPGEA 151 200 ENSP00000229179/1-925 ASMSMFSDFL QSFLKHSSST VFDLVEEYEN ICGSQVNILS KIVSRATPGL ENSBTAP00000042628/1-930 ASMSMFSDFL QSFLKHSSTT VFDLVEEYEN ICSSQVNILN KIVSRATPGL ENSTTRP00000014889/1-914 ASMSMFSDFL QSFLKHSSTT VFDLVEEYEN ICSSQVNILS KIVSRATPGL bmy_14380T0/1-884 ASMSMFSDFL QSFLRHSSTT VFDLVEEYEN ICISQVNILS KIVSRATPGL BACU016442/1-929 ASMSMFSDFL QSFLKHSSTT VFDLVEEYEN ICISQVNILS KIVSRATPGL 201 250 ENSP00000229179/1-925 QKFSKTASML WLLQQEMVTW RLLASLYRDR IQSALEEESV FAVTAVNASE ENSBTAP00000042628/1-930 QKFSKTASML WLLQQEMVTW RLLASLYRDR IQCALEDESM FAITALNASE ENSTTRP00000014889/1-914 QKFSKTASML WLLQQEMVTW RLLASLYRDR IQSALEDESM FVITVLNASE bmy_14380T0/1-884 QKFSKTASML WLLQQEMVTW RLLASLYRDR IQSALEDESM FVITALNASE BACU016442/1-929 QKFSKTASML WLLQQEMVTW RLLASLYRDR IQSALEDESM FVITVLNASE 251 300 ENSP00000229179/1-925 KTVVEALFQR DSLVRQSQLV VDWLESIAKD EIGEFSDNIE FYAKSVYWEN ENSBTAP00000042628/1-930 KAVVEALFQR DSLVRQSQLV VDWLESIAKD EIGDFSDNIE FYAKSVYWEN ENSTTRP00000014889/1-914 KAVVEALFQR DSLVRQSQLV VDWLESIAKD EIGDFSDNIE FYAKSVYWEN bmy_14380T0/1-884 KAVVEALFQR DSLVRQSQLV VDWLESIAKD EIGDFSDNIE FYAK----EN BACU016442/1-929 KAVVEALFQR DSLVRQSQLV VDWLESIAKD EIGDFSDNIE FYAKSVYWEN 301 350 ENSP00000229179/1-925 TLHTLKQRQL TSYVGSVRPL VTELDPDAPI RQKMPLDDLD REDEVRLLKY ENSBTAP00000042628/1-930 TLHTLKQRQL SSYIGSVRPL VTELDPDAPI RQKMPLDDLD REDEVRLLKY ENSTTRP00000014889/1-914 TLHTLKQRQL SSYIGSVRPL VTELXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14380T0/1-884 TLHTLKQRQL SSYIGSVRPL VTEL------ ---------- ---------- BACU016442/1-929 TLHTLKQRQL SSYIGSVRPL VTELDPDAPI RQKMPLDDLD REDEVRLLKY 351 400 ENSP00000229179/1-925 LFTLIRAGMT EEAQRLCKRC GQAWRAATLE GWKLYHDPNV NGGTELEPVE ENSBTAP00000042628/1-930 LFTLIRAGMT EEAQRLCKRC GQAWRAATLE GWKLYHDPNV NGGTELEPVE ENSTTRP00000014889/1-914 XXXXXXXXXX XXAQRLCKRC GQAWRAATLE GWKLYHDPNV NGGTELEHVE bmy_14380T0/1-884 ---------- --AQRLCKRC GQAWRAATLE GWKLYHDPNV NGGTELEHVE BACU016442/1-929 LFTLIRAGMT EEAQRLCKRC GQAWRAATLE GWKLYHDPNV NGGTELEHVE 401 450 ENSP00000229179/1-925 GNPYRRIWKI SCWRMAEDEL FNRYERAIYA ALSGNLKQ-- --LLPVCDTW ENSBTAP00000042628/1-930 GNPYRCIWKI SCWRMAEDEL FNRYERAIYA ALSGNLKQER VKLLPVCDSW ENSTTRP00000014889/1-914 GNPYRCIWKI SCWRMAEDXX XXXXXXXXXA ALSGNLKQ-- --LLPVCDTW bmy_14380T0/1-884 GNPYRCIWKI SCWRMAEDEL FNRYERAIYA ALSGNLKQ-- --LLPVCDTW BACU016442/1-929 GNPYRCIWKI SCWRMAEDEL FNRYERAIYA ALSGNLKQ-- --LLPVCDTW 451 500 ENSP00000229179/1-925 EDTVWAYFRV MVDSLVEQEI QTSVATLDET EELPREYLGA -NWTLEKVFE ENSBTAP00000042628/1-930 EDTVWAYFRV MVDSLVEQEI RTSVMTLDET EELPREYLEA KSWTLEKVFE ENSTTRP00000014889/1-914 EDTVWAYFRV MVDSLVEQEI RTSVITLDET EELPREYLEA -NWTLEKVFE bmy_14380T0/1-884 EDTVWAYFRV MVDSLVEQEI RTSVITLDET EELPREYLEA -NWTLEKVFE BACU016442/1-929 EDTVWAYFRV MVDSLVEQEI RTSVITLDET EELPREYLEA -NWTLEKVFE 501 550 ENSP00000229179/1-925 ELQATDKKRV LEENQEHYHI VQKFLILGDI DGLMDEFSKW LSKSRNNLPG ENSBTAP00000042628/1-930 ELQATDKKRV LEENQEHYHI VQKFLILGDI DGLMDEFSKW LSKSRNSLPG ENSTTRP00000014889/1-914 ELQATDKKRV LEENQEHYHI VQKFLILGDI D-------EW LSKSRNNLPH bmy_14380T0/1-884 ELQATDKKRV LEENQEHYHI VQKFLILGDI DGLMEEFSKW LSKSRSNLPG BACU016442/1-929 ELQATDKKRV LEENQEHYHI VQKFLILGDI DGLMEEFSKW LSKSRSNLPG 551 600 ENSP00000229179/1-925 HLLRFMTHLI LFFRTLGLQT KEEVSIEVLK TYIQLLIREK HTNLIAFYTC ENSBTAP00000042628/1-930 HLLRFMTHLI LFFRTLGLQT KEEISIDVLK TYIQLLINEK HTNLIAFYTC ENSTTRP00000014889/1-914 --LRFMTHSL --FRTLGLQT KEEVSIEVLK TYIQLLINEK HTNLIAFYTC bmy_14380T0/1-884 HLLRFMTHLI LFFRTLGLQT KEEVSIEVLK TYIQLLINEK HTNLIAFYTC BACU016442/1-929 HLLRFMTHLI LFFRTLGLQT KEEVSIEVLK TYIQLLINEK HTNLIAFYTC 601 650 ENSP00000229179/1-925 HLPQDLAVAQ YALFLESVTE FEQRHHCLEL AKEADLDVAT ITKTVVENIR ENSBTAP00000042628/1-930 HLPQDLAVAQ YALFLEGVTE FEQRHHCLEL AKEADLDIAA ITKTVVENIR ENSTTRP00000014889/1-914 HLPQDLAVAQ YALFLEGVTE FEQRHHCLEL AKEADLDIAT ITKTVVENIR bmy_14380T0/1-884 HLPQDLAVAQ YALFLEGVTE FEQRHHCLEL AKEADLDIAT ITKTVVENIR BACU016442/1-929 HLPQDLAVAQ YALFLEGVTE FEQRHHCLEL AKEADLDIAT ITKTVVENIR 651 700 ENSP00000229179/1-925 KKDNGEFSHH DLAPALDTGT TEEDRLKIDV IDWLVFDPAQ RAEALKQGNA ENSBTAP00000042628/1-930 KKDDGEFSHH DLSPALDTGT TEEDRLKIDV IDWLVFDPAQ RAEALKQGNA ENSTTRP00000014889/1-914 KKDNGEFSHH DLAPALDTGT TEEDRLKIDV IDWLVFDPSQ RAEALKQGNA bmy_14380T0/1-884 KKDNGEFSHH DLAPALDTGT TEEDRLKIDV IDWLVFDPSQ RAEALKQGNA BACU016442/1-929 KKDNGEFSHH DLAPALDTGT TEEDRLKIDV IDWLVFDPSQ RAEALKQGNA 701 750 ENSP00000229179/1-925 IMRKFLASKK HEAAKEVFVK IPQDSIAEIY NQCEEQGMES PLPAEDDNAI ENSBTAP00000042628/1-930 IMRKFLASKK HEAAKEVFVK IPQDSIAEIY NQWEEQGMDS PLPAEDDNAI ENSTTRP00000014889/1-914 IMRKFLASKK HEAAKEVFVK IPQDSIAEIY NQWEEQGMES PLPAEDDNAI bmy_14380T0/1-884 IMRKFLASKK HEAAKEVFVK IPQDSIAEIY NQWEEQGMES PLPAEDDNAI BACU016442/1-929 IMRKFLASKK HEAAKEVFVK IPQDSIAEIY NQWEEQGMES PLPAEDDNAI 751 800 ENSP00000229179/1-925 REHLCIRAYL EAHETFNEWF KHMNSVPQKP ALIPQPTFTE KVAHEHKEKK ENSBTAP00000042628/1-930 REHLCIRAYL EAHETFNEWF KHMNSAPQKP TLTTQATFTE KVAHEHKEKK ENSTTRP00000014889/1-914 REHLCIRAYL EAHETFNEWF KHMNSAPQKP TLTPQATFTE KVAHEHKEKK bmy_14380T0/1-884 REHLCIRAYL EAHETFNEWF KHMNSAPQKP TLTPQATFTE KVAHEHKEKK BACU016442/1-929 REHLCIRAYL EAHETFNEWF KHMNSAPQKP TLTPQATFTE KVAHEHKEKK 801 850 ENSP00000229179/1-925 YEMDFGIWKG HLDALTADVK EKMYNVLLFV DGGWMVDVRE DAKEDHERTH ENSBTAP00000042628/1-930 YEMDYGIWKG HLDALTADVK EKMYNVLLFV DGGWMVDVRE DAEEDHERIH ENSTTRP00000014889/1-914 YEMDYGIWKG HLDALTADVK EKMYNVLLFV DGGWMVDVRE DAEEDHERTY bmy_14380T0/1-884 YEMDYGIWKG HLDALTADVK EKMYNVLLFV DGGWMVDVRE DAEEDHERTY BACU016442/1-929 YEMDYGIWKG HLDALTADVK EKMYNVLLFV DGGWMVDVRE DAEEDHERTY 851 900 ENSP00000229179/1-925 QMVLLRKLCL PMLCFLLHTI LHSTGQYQE- --CLQLADMV SSERHKLYLV ENSBTAP00000042628/1-930 QMVLLRKLCL PMLCFLLHTI LHSTGQYQE- --CLQLADMV SSERHKLYLV ENSTTRP00000014889/1-914 QMVLLRKLCL PMLCFLLHTI LHSTGQYQE- --CLQLADMV SSERHKLYLV bmy_14380T0/1-884 QMVLLRKLCL PMLCFLLHTI LHSTGQYQE- --CLQLADMV SSERHKLYLV BACU016442/1-929 QMVLLRKLCL PMLCFLLHTI LHSTGQYQEX XXCLQLADMV SSERHKLYLV 901 950 ENSP00000229179/1-925 FSKEELRKLL QKLRESSLML LDQGLDPLGY EIQL ENSBTAP00000042628/1-930 FSKEELRKLL QKLRESSLML LDQGLDPLGY EIQS ENSTTRP00000014889/1-914 FSKEELRKLL QKLRESSLML LDQGLDPLGY EIQS bmy_14380T0/1-884 FSKEELRKLL QKLRESSLML LDQGLDPLGY EIQS BACU016442/1-929 FSKEELRKLL QKLRESSLML LDQGLDPLGY EIQS