KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:53:38 2014 Check: 00 .. Name: BACU018758/1-555 Len: 612 Check: 1190 Weight: 1.00 Name: bmy_07654T0/1-541 Len: 612 Check: 1183 Weight: 1.00 Name: ENSP00000370022/1-598 Len: 612 Check: 1991 Weight: 1.00 Name: ENSTTRP00000003244/1-602 Len: 612 Check: 663 Weight: 1.00 Name: ENSBTAP00000042518/1-602 Len: 612 Check: 1478 Weight: 1.00 // 1 50 BACU018758/1-555 ---------- MFPAQDALPR GGLNLKEEPL LPAGLGSVRS WMQGAGILDA bmy_07654T0/1-541 MKCEREDSLA GEQEEDALPR GGLNLKEEPL LPAGLGSVRS WMQGAGILDA ENSP00000370022/1-598 ---------- ----MDALPR SGLNLKEEPL LPAGLGSVRS WMQGAGILDA ENSTTRP00000003244/1-602 ---------- MFPAQDALPR GGLNLKEEPL LPAGLGSVRS WMQGAGILDA ENSBTAP00000042518/1-602 ---------- MFPAQDAVPR GGLNLKEEPL LPAGLGSVRS WMQGAGILDA 51 100 BACU018758/1-555 STAAQSGVGL ARAHFEKQPP SNLRKSNFFH FVLAMYDRQG QPVEVERTAF bmy_07654T0/1-541 STAAQSGVGL ARAHFEKQPP SNLRKSNFFH FVLAMYDRQG QPVEVERTAF ENSP00000370022/1-598 STAAQSGVGL ARAHFEKQPP SNLRKSNFFH FVLAMYDRQG QPVEVERTAF ENSTTRP00000003244/1-602 STAAQSGVGL ARAHFEKQPP SNLRKSNFFH FVLAMYDRQG QPVEVERTAF ENSBTAP00000042518/1-602 STAAQSGVGL ARAHFEKQPP SNLRKSNFFH FVLAMYDRQG QPVEVERTAF 101 150 BACU018758/1-555 IDFVEKDREP GGEKTNNGIH YRLRLVYNNG LRTEQDLYVR LIDSMSKQAI bmy_07654T0/1-541 IDFVEKDREP RGEKTNNGIH YRLRLVYNNG LRTEQDLYVR LIDSMSKQAI ENSP00000370022/1-598 IDFVEKDREP GAEKTNNGIH YRLRLVYNNG LRTEQDLYVR LIDSMSKQAI ENSTTRP00000003244/1-602 IDFVEKDREP GAEKTNNGIH YRLRLVYNNG LRTEQDLYVR LIDSVSKQAI ENSBTAP00000042518/1-602 IDFVEKDREP GAEKTNNGIH YRLRLVYNNG LRTEQDLYVR LIDSMSKQAI 151 200 BACU018758/1-555 IYEGQDKNPE MCRVLLTHEI MCSRCCDRKS CGNRNETPSD PVIIDRFFLK bmy_07654T0/1-541 IYEGQDKNPE MCRVLLTHEI MCSRCCDRKS CGNRNETPSD PVIIDRFFLK ENSP00000370022/1-598 IYEGQDKNPE MCRVLLTHEI MCSRCCDRKS CGNRNETPSD PVIIDRFFLK ENSTTRP00000003244/1-602 IYEGQDKNPE MCRVLLTHEI MCSRCCDRKS CGNRNETPSD PVIIDRFFLK ENSBTAP00000042518/1-602 IYEGQDKNPE MCRVLLTHEI MCSRCCDRKS CGNRNETPSD PVIIDRFFLK 201 250 BACU018758/1-555 FFLKCNQNCL KNAGNPRDMR RFQVVVSTTV SVDGHVLAVS DNMFVHNNSK bmy_07654T0/1-541 FFLKCNQNCL KNAGNPRDMR RFQVVVSTTV SVDGHVLAVS DNMFVHNNSK ENSP00000370022/1-598 FFLKCNQNCL KNAGNPRDMR RFQVVVSTTV SVDGHVLAVS DNMFVHNNSK ENSTTRP00000003244/1-602 FFLKCNQNCL KNAGNPRDMR RFQVVVSTTV SVDGHVLAVS DNMFVHNNSK ENSBTAP00000042518/1-602 FFLKCNQNCL KNAGNPRDMR RFQVVVSTTV SVDGHVLAVS DNMFVHNNSK 251 300 BACU018758/1-555 HGRRARRLDP SEAATPCIKA ISPGEGWTTG GATVIVIGDN FFDGLQVVFG bmy_07654T0/1-541 HGRRARRLDP SEAATPCIKA ISPGEGWTTG GATVIVIGDN FFDGLQVVFG ENSP00000370022/1-598 HGRRARRLDP SEAATPCIKA ISPGEGWTTG GATVIVIGDN FFDGLQVVFG ENSTTRP00000003244/1-602 HGRRARRLDP SEAATPCIKA ISPGEGWTTG GATVIVIGDN FFDGLQVVFG ENSBTAP00000042518/1-602 HGRRARRLDP SEAATPCIKA ISPGEGWTTG GATVIVIGDN FFDGLQVVFG 301 350 BACU018758/1-555 NVLVWSELIT PHAIRVQTPP RHIPGVVEVS LSYKSKQFCK GAPGRFVYTA bmy_07654T0/1-541 NVLVWSELIT PHAIRVQTPP RHIPGVVEVT LSYKSKQFCK GAPGRFVYTA ENSP00000370022/1-598 NVLVWSELIT PHAIRVQTPP RHIPGVVEVT LSYKSKQFCK GCPGRFVYTA ENSTTRP00000003244/1-602 NVLVWSELIT PHAIRVQTPP RHIPGVVEVT LSYKSKQFCK GAPGRFVYTA ENSBTAP00000042518/1-602 NVLVWSELIT PHAIRVQTPP RHIPGVVEVT LSYKSKQFCK GAPGRFVYTA 351 400 BACU018758/1-555 LNEPTIDYGF QRLQKVIPRH PADPERLPK- -VLRGAG--- ------RGGE bmy_07654T0/1-541 LNEPTIDYGF QRLQKVIPRH PGDPERLPKE VLLKRAADLA EALYGVPGGN ENSP00000370022/1-598 LNEPTIDYGF QRLQKVIPRH PGDPERLPKE VLLKRAADLA EALYGVPGSN ENSTTRP00000003244/1-602 LNEPTIDYGF QRLQKVIPRH PGDPERLPKE VLLKQAADLA ETLYGVPGGN ENSBTAP00000042518/1-602 LNEPTIDYGF QRLQKVIPRH PGDPERLPKE VLLKRAADLA EALYGVPSGN 401 450 BACU018758/1-555 KGVRWPRGEE AAPGPSAAPG AAPPSGCFPP ---------- ----CPQEVL bmy_07654T0/1-541 QELLLKRAAD VAEALYSAP- --APLGPLAP SHPHPAVVGI NAFSSPLAIA ENSP00000370022/1-598 QELLLKRAAD VAEALYSTPR APGPLAPLAP SHPHPAVVGI NAFSSPLAIA ENSTTRP00000003244/1-602 QELLLKRAAD VAEALYSAPR APAPLGPLAP SHPHPAVVGI NAFSSPLAIA ENSBTAP00000042518/1-602 QELLLKRAAD VAEALYSAPR APAPLGPLAP SHPHPAVVGI NAFSSPLAIA 451 500 BACU018758/1-555 LKRAADLAEA LYGV------ -------PGG NQ-------- -GLGGYGAPG bmy_07654T0/1-541 VGDATPGPEP GYARSCGSAS PRGFAPSPGS QQSGYGGGLG AGLGGYGAPG ENSP00000370022/1-598 VGDATPGPEP GYARSCSSAS PRGFAPSPGS QQSGYGGGLG AGLGGYGAPG ENSTTRP00000003244/1-602 VGDATPGPEP GYARSCGSAS PRGFAPSPGS QQSGYGGGLG AGLGGYGAPG ENSBTAP00000042518/1-602 VGDATPGPEP GYARSCGSAS PRGFAPSPGS QQSGYGGSLG AGLGGYGAPG 501 550 BACU018758/1-555 VAGLGVPASP SFLNGSTATS PFAIMPSSPP LAAASSMSLP AAAPTTSVFS bmy_07654T0/1-541 VAGLGVPASP SFLNGSTATS PFATTSS--- ---------- ---------- ENSP00000370022/1-598 VAGLGVPGSP SFLNGSTATS PFAIMPSSPP LAAASSMSLP AAAPTTSVFS ENSTTRP00000003244/1-602 VAGLGVPASP SFLNGSTATS PFAIMPSSPP LATASSMSLP AAAPTTSVFS ENSBTAP00000042518/1-602 VTGLGVPGSP SFLNGSTATS PFAIMPSSPP LASASSMSLP AAAPTTSVFS 551 600 BACU018758/1-555 FSPVNMISAV KQRSAFAPVL RPPSSPPQAC PRAHGEGLPD QPFEDSDKFH bmy_07654T0/1-541 -------PGL NHNSQYYPNY KMRL------ ---------- ---------- ENSP00000370022/1-598 FSPVNMISAV KQRSAFAPVL RPPSSPPQAC PRAHGEGLPD QSFEDSDKFH ENSTTRP00000003244/1-602 FSPVNMISAV KQRSAFAPVL RPPSSPPQAC PRAHGEGLPD QPFEDSDKFH ENSBTAP00000042518/1-602 FSPVHMISAV KQRSAFAPVL RPPSSPPQAC PRTHGEGLPD QPFEDSDKFH 601 650 BACU018758/1-555 SPARGLQGLA YS bmy_07654T0/1-541 ---------- -- ENSP00000370022/1-598 SPARGLQGLA YS ENSTTRP00000003244/1-602 SPARGLQGLA YS ENSBTAP00000042518/1-602 SPARGLQGLA YS