KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:53:38 2014 Check: 00 .. Name: BACU014765/1-148 Len: 339 Check: 9484 Weight: 1.00 Name: ENSP00000359116/1-318 Len: 339 Check: 4969 Weight: 1.00 Name: bmy_14486T0/1-323 Len: 339 Check: 4869 Weight: 1.00 Name: ENSBTAP00000042516/1-333 Len: 339 Check: 235 Weight: 1.00 // 1 50 BACU014765/1-148 ---------A DTSNLNTEQN ---------- ---------- ----DSWTS- ENSP00000359116/1-318 MSTHVAGLGL DKMKLGNPQS FLDQEEADDQ ---------Q LLEPEAWKTY bmy_14486T0/1-323 MNLQVTGLDP DGMKLDGPQC FLDQEEAEEA EEAEEAEGRQ LLEPETWRAY ENSBTAP00000042516/1-333 MNFQVTGLGL DKIKLDSPQS FLDQEEVEEA EDG------Q LLEPEAWRTY 51 100 BACU014765/1-148 ---------- ---------- ---------- ---------- --------EN ENSP00000359116/1-318 TERRNALREF LTSDLSPHLL KRHHARMQLL RKCSYYIEVL PKHLALGDQN bmy_14486T0/1-323 AERRNALRKF LTSALSPQLL KRHHARVELL KKCSYHLELL PKHLALGDQN ENSBTAP00000042516/1-333 VERRNALQEF LTSDLSPHLL KRHHARMELL KKCSYYIEIL PKHLALGDQN 101 150 BACU014765/1-148 SWLDPSV--- ---------- --KGPPETKA EEAEL----- -----RKSLD ENSP00000359116/1-318 PLVLPSALFQ LIDPWKFQRM KKVGTAQTKI QLLLLGDLLE QLDHGRAELD bmy_14486T0/1-323 PRVLPTT-FQ FIDPQKFQRM KKVGMAQTKI QLQLLGELLE QLDHGRSELD ENSBTAP00000042516/1-333 PLVLPTTMFQ LIDPWKFQRM KKVGAAQTKI QLLLLGDLLE QLDHGRSELD 151 200 BACU014765/1-148 RFYEVFGHPQ LASGNSLSTS VCQCLSQKIN EL-----KGK ENQKYTLRS- ENSP00000359116/1-318 ALLRSPDPRP FLADWALVER RLADVSAVMD SFLTMMVPGR LHVKHRLVSD bmy_14486T0/1-323 ALLESPDPQP FLAGWRLVEQ RLADLAAVTD SFLATMVPGR LHTKHRLVSD ENSBTAP00000042516/1-333 ALLESPDPRP FLAGWGLVEQ RLADLSAVMD SFLAMMVPGR LHIKHRLVSD 201 250 BACU014765/1-148 ---------- ---FQMARVI FNRDSCSILQ KHSRDAHFY- --PTREGSAS ENSP00000359116/1-318 VSATKIPHIW LMLSTKMPVV FDRKASAAHQ DWARLRWFVT IQPATSEQYE bmy_14486T0/1-323 VGATKIPHIQ LMLSTKMPVT FDRKESVAHQ DWVSLRWFVT LQPAVPEQFE ENSBTAP00000042516/1-333 IGATKIPHIR LMLSTKMPVM FDRKESVAHQ DWVSLRWFVT IQQAVPEQFE 251 300 BACU014765/1-148 LEDEKLTPGL SKEIIH---- ---------- ---------F LLQQ----NL ENSP00000359116/1-318 LRFRLLDPRT QQECAQCGVI PVAACTFDVR NLLPNRSYKF TIKRAETSTL bmy_14486T0/1-323 LCYELLDPQT QQECLQCGII PVAACTFDVR NLLPNRSYKF TIKRVEGYTL ENSBTAP00000042516/1-333 LRYKLLDPRT QQECMQCGII PVAACAFDIR NLLPNRAYKF TVKRAESYTL 301 350 BACU014765/1-148 MKDP------ ---------- ---------- --------- ENSP00000359116/1-318 VYEPWRDSLT LHTKPEPLEG PALSHSV--- --------- bmy_14486T0/1-323 VYEPWLDSLT LQTRPRPPEG PAPP------ --------- ENSBTAP00000042516/1-333 VYEPWRDSLT LHTRPGPPEG LAPSRLGKLG LSLTTPSER