KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:52:12 2014 Check: 00 .. Name: ENSTTRP00000013421/1-1266 Len: 1306 Check: 9397 Weight: 1.00 Name: ENSP00000442795/1-1274 Len: 1306 Check: 2208 Weight: 1.00 Name: ENSBTAP00000041618/1-1269 Len: 1306 Check: 5959 Weight: 1.00 Name: bmy_04128T0/1-869 Len: 1306 Check: 8448 Weight: 1.00 Name: BACU008958/1-1285 Len: 1306 Check: 3375 Weight: 1.00 // 1 50 ENSTTRP00000013421/1-1266 MPEPGKKPVS AFSKKPRSVE VATGSPAVFE AETERAGVKV RWQRAGRDIS ENSP00000442795/1-1274 MPEPGKKPVS AFSKKPRSVE VAAGSPAVFE AETERAGVKV RWQRGGSDIS ENSBTAP00000041618/1-1269 MPEPGKKPVS AFSKKPRSAE VAAGSSAVFE AETERAGLKV RWQRAGSDIS bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 MDFGVQRGVS AFNKKPRSVE VATGSPAVFE AETERAGVKV RWQRAGSDIS 51 100 ENSTTRP00000013421/1-1266 ASDKYGLAAE GTRHTLTVRD VGSADQGSYA VIAGSSKVKF DLKVLEAGKA ENSP00000442795/1-1274 ASNKYGLATE GTRHTLTVRE VGPADQGSYA VIAGSSKVKF DLKVIEAEKA ENSBTAP00000041618/1-1269 ASDKYSLAAE GTRHTLTVRD VGPADQGSYA VIAGSSKVKF DLKVVDAGKA bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 ASDKYGLAAE GTRHTLTVRD VGSADQGSYA VIAGSSKVKF DLKVLEAGKA 101 150 ENSTTRP00000013421/1-1266 EPVPGPAPAP AEAPGAPGEA LASATEVEGG SPRPEGSSSA APDGPS--VP ENSP00000442795/1-1274 EPMLAPAPAP AEATGAPGEA PAPAAELGES APSPKGSSSA ALNGPTPGAP ENSBTAP00000041618/1-1269 EPVSAPAPAP TEAPGAPGEA PTSAPEVEAG APSPEESSSA APEGPS--AP bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 EPVPGPAAAP AEAPGAPGEA LASATVVEGG SPTPEGSSSA APDGPS--VP 151 200 ENSTTRP00000013421/1-1266 DDPIGLFVMR PQDGEVTAGG SITFSARVAG ASLLKPPVVK WFKGKWVDLS ENSP00000442795/1-1274 DDPIGLFVMR PQDGEVTVGG SITFSARVAG ASLLKPPVVK WFKGKWVDLS ENSBTAP00000041618/1-1269 GDPIGLFVMR PQDGEVTVGG TITFSARVAG ASLLKPPVVK WFKGKWVDLS bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 DDPIGLFVMR PQDGEVTAGG SITFSARVAG ASLLKPPVVK WFKGKWVDLS 201 250 ENSTTRP00000013421/1-1266 SKVGQHLQLH DSYDRTSKVY LFELHITDAQ ATFAGGYRCE VSTKDKFDSC ENSP00000442795/1-1274 SKVGQHLQLH DSYDRASKVY LFELHITDAQ PAFTGSYRCE VSTKDKFDCS ENSBTAP00000041618/1-1269 SKVGQHLQLH DSYDRTSKVY LFELRIMDAQ TTFAGGYRCE VSTKDKFDSC bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 SKVGQHLQLH DSYDRTSKVY LFELHITDAQ ATFAGGYRCE VSTKDKFDSC 251 300 ENSTTRP00000013421/1-1266 NFNLTVHEAI GPVDVDLRSA FRRTSLAGGG RRISDGHEDA GTLDFSSLLR ENSP00000442795/1-1274 NFNLTVHEAM GTGDLDLLSA FRRTSLAGGG RRISDSHEDT GILDFSSLLK ENSBTAP00000041618/1-1269 NFNLTVHEAV GPGDVDLRST FRRTSLAGGS RRISDSHEDA GTLDFSSLLR bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 NFNLTVHEAI GPGDVDLRSA FRRT------ ----DGHEDA GTLDFSSLLR 301 350 ENSTTRP00000013421/1-1266 KSSSFRTPRD SRLEAPAEED VWEILRQAPP SEYERIAFQH GITDLRGMLK ENSP00000442795/1-1274 KRDSFRTPRD SKLEAPAEED VWEILRQAPP SEYERIAFQY GVTDLRGMLK ENSBTAP00000041618/1-1269 KSS----LRT PRLEAPAEED VWEILRQAPP SEYERIAFQH GVTDLRGMLK bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 K-------RD SRLEGPAEED VWEILRQASP SEYERIAFQH GITDLRGMLK 351 400 ENSTTRP00000013421/1-1266 RLKGMKREEK KST------- ---------- -------AFQ KKLQPAYQVS ENSP00000442795/1-1274 RLKGMRRDEK KST------- ---------- -------AFQ KKLEPAYQVS ENSBTAP00000041618/1-1269 RLKGIKRDEK KST------- ---------- -------AFQ KKLQPAYQVS bmy_04128T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU008958/1-1285 RLKGMRREEK KSTGETRLPG RGEGKPREQG AEGWKRSAFQ KKLQPAYQVS 401 450 ENSTTRP00000013421/1-1266 KGHKIRLTVE LADPDAEVKW LKNGQEIQMS GSKYIFESVG AKRTLTISQC ENSP00000442795/1-1274 KGHKIRLTVE LADHDAEVKW LKNGQEIQMS GSKYIFESIG AKRTLTISQC ENSBTAP00000041618/1-1269 KGHKIRLMVE LADPDAEVKW LKNGQEIQMS GSKYIFESIG AKRTLTISQC bmy_04128T0/1-869 ---------- ---------- --------MS G-RYIFESVG AKRMLTISQC BACU008958/1-1285 KGHKIRLTVE LADPDAEVKW LKNGQEIQMS G-RYIFESVG TKRTLTISQC 451 500 ENSTTRP00000013421/1-1266 SLADDAAYQC VVGSEKCSTE LFVKEPPVLI TCPLEDQLVM VGQRVEFECE ENSP00000442795/1-1274 SLADDAAYQC VVGGEKCSTE LFVKEPPVLI TRPLEDQLVM VGQRVEFECE ENSBTAP00000041618/1-1269 SLADDAAYQC VVGGEKCSTE LFVKEPPVLI TRPLEDQLVM VGQRVEFECE bmy_04128T0/1-869 SLADDAAYQC VVGSEKCSTE LFVKEPPVLI TCPLEDQLVM VGQRVEFECE BACU008958/1-1285 SLADDAAYQC VVGSEKCSTE LFVKEPPVLI TCPLEDQLVM VGQRVEFECE 501 550 ENSTTRP00000013421/1-1266 VSEEGAQVKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000442795/1-1274 VSEEGAQVKW LKDGVELTRE ETFKYRFKKD GQRHHLIINE AMLEDAGHYA ENSBTAP00000041618/1-1269 VSEEGAQVKW LKDGVELTRE ETFKYRFKKD GQKHHLIINE ATLEDAGHYA bmy_04128T0/1-869 VSEEGAQVKW LKDGVELTRE ETFKYRFKKD GQRHHLIINE ATLEDAGRYA BACU008958/1-1285 VSEEGAQVKW LKDGVELTRE ETFKYRFKKD GQRHHLIINE ATLEDAGHYA 551 600 ENSTTRP00000013421/1-1266 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000442795/1-1274 LCTSGGQALA ELIVQEKKLE VYQSIADLMV GAKDQAVFKC EVSDENVRGV ENSBTAP00000041618/1-1269 LRTSGGQALA ELIVQEKKLE VYQSIADLTV GSKDQAVFKC EVSDENVRGV bmy_04128T0/1-869 LRTNGGQALA ELIVQEKKLE VYQSIADLTV GSKDQAVFKC EVSDENVRGV BACU008958/1-1285 LRTSGGQALA ELIVQEKKLE VYQSIADLTV GSKDQAVFKC EVSDENVRGV 601 650 ENSTTRP00000013421/1-1266 XXXXXXXXXX XXXXXXXXXX XVHRLTIDDV TPADEADYSF VPQGFACNLS ENSP00000442795/1-1274 WLKNGKELVP DSRIKVSHIG RVHKLTIDDV TPADEADYSF VPEGFACNLS ENSBTAP00000041618/1-1269 WLKNGKELVP DSRIKVSHIG RVHKLTIDDV TPADEADYSF VPEGFACNLS bmy_04128T0/1-869 WLKNGKELVP DSRIKVSHIG RVHRLTVDDV TPADEADYSF VPEGFACNLS BACU008958/1-1285 WLKNGKELVP DSRIKVSHIG RVHRLTVDDV TPADEADYSF VPEGFACNLS 651 700 ENSTTRP00000013421/1-1266 AKLHFMEVKI DFVPRQEPPK IHLDCPGRVP DTIVVVAGNK LRLDVPISGD ENSP00000442795/1-1274 AKLHFMEVKI DFVPRQEPPK IHLDCPGRIP DTIVVVAGNK LRLDVPISGD ENSBTAP00000041618/1-1269 AKLHFMEVKI DFVPRQEPPK IHLDCPGRVP DTIVVVAGNK LRLDVPISGD bmy_04128T0/1-869 AKLHFMEVKI DFVPRQEPPK IHLDCPGRVP DTIVVVAGNK LRLDVPISGD BACU008958/1-1285 AKLHFMEVKI DFVPRQEPPK IHLDCPGRVP DTIVVVAGNK LRLDVPISGD 701 750 ENSTTRP00000013421/1-1266 PAPTVIWQKT ITKRNKV--- PALDASGDAG ASDEWVFDKK LLCETEGRVR ENSP00000442795/1-1274 PAPTVIWQKA ITQGNKAPAR PAPDAPEDTG DSDEWVFDKK LLCETEGRVR ENSBTAP00000041618/1-1269 PAPTVIWQKA ITKGNKVPAG PAPDASEESG AGDEWVFDKK LLCETEGRVR bmy_04128T0/1-869 PAPTVIWQKT ITKGNKVPAG PALDASGDSG ASDEWVFDKK LLCETEGRVR BACU008958/1-1285 PAPTVIWQKT ITKGNKVPAG PALDASGDSG ASDEWVFDKK LLCETEGRVR 751 800 ENSTTRP00000013421/1-1266 VETTKDRSIF TVEGAEKEDE GVYVVTVQNP VGEDQVNLTV KVIDVPDAPA ENSP00000442795/1-1274 VETTKDRSIF TVEGAEKEDE GVYTVTVKNP VGEDQVNLTV KVIDVPDAPA ENSBTAP00000041618/1-1269 VETTKDRSIF TVEGAEREDE GVYVVTVKNP VGEDQVSLTV KVIDVPDAPA bmy_04128T0/1-869 VETTKDRSIF TVEGAEKEDE GVYVVTVKNP VGEDQVNLTV KVIDVPDAPA BACU008958/1-1285 VETTKDRSIF TVEGAEKEDE GVYVVTVKNP VGEDQVNLTV KVIDVPDAPA 801 850 ENSTTRP00000013421/1-1266 APSISNVGED SCTVRWEPPA YDGGQPVLGY ILERKKKKSY RWMRLNFDLL ENSP00000442795/1-1274 APKISNVGED SCTVQWEPPA YDGGQPILGY ILERKKKKSY RWMRLNFDLI ENSBTAP00000041618/1-1269 APEISKVGED SCTVCWEPPA YDGGQPVLGY ILERKKKKSY RWMRLNFDLL bmy_04128T0/1-869 APEISNVGED SCTVRWEPPA YDGGQPVLGY ILERKKKKSY RWMRLNFDLL BACU008958/1-1285 APEISNVGED SCTVRWEPPA YDGGQPVLGY ILERKKKKSY RWMRLNFDLL 851 900 ENSTTRP00000013421/1-1266 RELSHEARSM IEGVVYEMRV YAVNAVGMSR PSPASQPFMP VXXXXXXXXX ENSP00000442795/1-1274 QELSHEARRM IEGVVYEMRV YAVNAIGMSR PSPASQPFMP IGPPSEPTHL ENSBTAP00000041618/1-1269 RELSHEARRM IEGVIYEMRV YAVNAVGMSR PSPASQPFMP IGPPSEPTHL bmy_04128T0/1-869 RELSHEARCM IEGVVYEMRV YAVNAVGMSR PSPASQPFMP VGPPSEPSHL BACU008958/1-1285 RELSHEARCM IEGVVYEMRV YAVNAVGMSR PSPASQPFMP VGPPSEPSHL 901 950 ENSTTRP00000013421/1-1266 XXXXXXXXXX XXXXXPPERM GAGGLDGYSV EYCQDGC-SE WVAALQGLTE ENSP00000442795/1-1274 AVEDVSDTTV SLKWRPPERV GAGGLDGYSV EYCPEGC-SE WVAALQGLTE ENSBTAP00000041618/1-1269 AVEDISDTTV SLKWRPPERA GAGGLDGYSV EYRREGSGSA WVSALPGLIE bmy_04128T0/1-869 AVEDVSDTTV SLKWRPPERT GAGGLDGYSV EYCRDGC-SE WVAALQGLTE BACU008958/1-1285 AVEDVSDTTV SLKWRPPERM GAGGLDGYSV EYCRDGC-SE WVAALPGLSE 951 1000 ENSTTRP00000013421/1-1266 HTSLLVKDLP TGARLLFRVR AHNVAGPGAP VTTTEPVTVQ EILQRPRLQL ENSP00000442795/1-1274 HTSILVKDLP TGARLLFRVR AHNMAGPGAP VTTTEPVTVQ EILQRPRLQL ENSBTAP00000041618/1-1269 RTSLLVKDLP TGARVLFRVR AHNLAGAGPP VTTKEPVTVQ ELLQRPRLQL bmy_04128T0/1-869 HTSLLVKDLP TGARLLFRVR AHNVAGPGAP VTTKEPVMVQ EILQRPRLQL BACU008958/1-1285 HTSLLVKDLP TGARLLFRVR AHNVAGPGAP VTTKEPVTVQ EILQRPRLQL 1001 1050 ENSTTRP00000013421/1-1266 PRHLRQTIQK KVGEPVNLLI PFQGKPRPQV TWTKEGQPLA GEEVSIRNSP ENSP00000442795/1-1274 PRHLRQTIQK KVGEPVNLLI PFQGKPRPQV TWTKEGQPLA GEEVSIRNSP ENSBTAP00000041618/1-1269 PRHLRQTIQK KVGEPVNLLI PFQGKPRPQV TWTKEGQPLA GEEVSIRNSP bmy_04128T0/1-869 PRHLRQTIQK KVGEPVNLLI PFQGKPRPQV TWTKEGQPLA GEEVSIRNSP BACU008958/1-1285 PRHLRQTIQK KVGEPVNLLI PFQGKPRPQV TWTKEGQPLA GEEVSIRNSP 1051 1100 ENSTTRP00000013421/1-1266 TDTILFIRAA HLAHSGTYRV TLRIESMEDK AELVLQVVDK PGPPQDIRVT ENSP00000442795/1-1274 TDTILFIRAA RRVHSGTYQV TVRIENMEDK ATLVLQVVDK PSPPQDLRVT ENSBTAP00000041618/1-1269 TDTILFIRAA HRAHSGTYQV TLRVEDMEDK AQLVLQVVDK PSPPQDIQVA bmy_04128T0/1-869 TDTILFIRAA HLAHSGTYQV TLRIESMEDK AELVLQVVDK PSPPQDIRVI BACU008958/1-1285 TDTILFIRAA HVAHSGTYQV TLRIESMEDK AELVLQVVDK PSPPQDIRVI 1101 1150 ENSTTRP00000013421/1-1266 ETWGFNVALE WKPPQDDGNT ELWGYTVQKA DKKSMEWFTV VEHYRPTHCV ENSP00000442795/1-1274 DAWGLNVALE WKPPQDVGNT ELWGYTVQKA DKKTMEWFTV LEHYRRTHCV ENSBTAP00000041618/1-1269 EAWGFNVALE WKPPQDDGNT ELWGYTVQKA DKKTMEWFTV LEHYRHTHCV bmy_04128T0/1-869 EAWGFNVALE WKPPQDDGNT ELWGYTVQKA DKKSMEWFTV LEHYRRTYCV BACU008958/1-1285 EAWGFNVALE WKPPQDDGNT ELWGYTVQKA DKKSMEWFTV LEHYRRTYCV 1151 1200 ENSTTRP00000013421/1-1266 VSELIIGNGY YFRVFSHNMV GPSDRAATTK EPVFIPRPGI TYEPPNYKAL ENSP00000442795/1-1274 VPELIIGNGY YFRVFSQNMV GFSDRAATTK EPVFIPRPGI TYEPPNYKAL ENSBTAP00000041618/1-1269 VSELIIGNSY YFRVFSHNTV GPSDTAATTK EPVLIPRPGI TYELPKYKAL bmy_04128T0/1-869 VSELIIGNGY YFRVFSHNMV GPSDRAATTK EPVFIPRPGI MYESPNYKAL BACU008958/1-1285 VSELIIGNGY YFRVFSHNMV GPSDRAATTK EPVFIPRPGI TYESPNYKAL 1201 1250 ENSTTRP00000013421/1-1266 DFSEAPSFTR PLVNRSVIAG YNATLCCAVR GSPKPKISWF QNGLDLGKDA ENSP00000442795/1-1274 DFSEAPSFTQ PLVNRSVIAG YTAMLCCAVR GSPKPKISWF KNGLDLGEDA ENSBTAP00000041618/1-1269 DFSEAPSFTR PLVNRSVIAG YNTTLCCAVR GSPKPKISWF KNGLDLGKDA bmy_04128T0/1-869 DFSEAPSFTR PLVNRSVIAG YNATLCCAVR GSPKPQISWF KNGLDLGKDA BACU008958/1-1285 DFSEAPSFTR PLVNRSIIAG YNATLCCAVR GSPKPKISWF KNGLDLGKDA 1251 1300 ENSTTRP00000013421/1-1266 RFRMFSKQGV LTLEIRKPCP FDGGVYVCRA TNLQGEAQCE CRLEVR---- ENSP00000442795/1-1274 RFRMFSKQGV LTLEIRKPCP FDGGIYVCRA TNLQGEARCE CRLEVRVPQ- ENSBTAP00000041618/1-1269 RFRMFSKQGV LTLEIRKPCP FDGGIYACRA TNLEGEAQCE CRLEVRVPQ- bmy_04128T0/1-869 RFRMFSKQGV LTLEIRKPCP FDGGVYVCRA TNLQGEAQCE CRLEVRVPQ- BACU008958/1-1285 RFRMFSKQGV LTLEIRKPCL FDRGVYVCRA TNLQGEAQCE CRLEVRGVKA 1301 1350 ENSTTRP00000013421/1-1266 ------ ENSP00000442795/1-1274 ------ ENSBTAP00000041618/1-1269 ------ bmy_04128T0/1-869 ------ BACU008958/1-1285 LFGCSL