KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:51:56 2014 Check: 00 .. Name: bmy_00584T0/1-168 Len: 361 Check: 2476 Weight: 1.00 Name: ENSTTRP00000016133/1-299 Len: 361 Check: 1202 Weight: 1.00 Name: ENSP00000363506/1-299 Len: 361 Check: 3412 Weight: 1.00 Name: ENSBTAP00000041409/1-296 Len: 361 Check: 7225 Weight: 1.00 // 1 50 bmy_00584T0/1-168 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016133/1-299 --------RN RISISQWVPV CSRLLLVSHT QGQWGRALSG TSQFSWLENS ENSP00000363506/1-299 MALLVRVLRN QTSISQWVPV CSRLIPVSPT QGQGDRALSR TSQ------- ENSBTAP00000041409/1-296 MALLVRVLRN QISISQWVPG CSRLLLASRT QGQQGRTLSG TF-------- 51 100 bmy_00584T0/1-168 ---------- ---------- ---MQVHPKR R--------- ---------- ENSTTRP00000016133/1-299 ASEHPWPQMS QALACGGSV- ---VDIQLSR KYHTTNKLSS TKDSPQPVEE ENSP00000363506/1-299 -----WPQMS QSRACGGSEQ IPGIDIQLNR KYHTTRKLST TKDSPQPVEE ENSBTAP00000041409/1-296 -------QMS QALACGGSVQ IPGVDIELRR KYHTTSKLSS TKDSPQPVEE 101 150 bmy_00584T0/1-168 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016133/1-299 KVGAFTKIIE AMGFTGPLKY SKWXXXXXXX XXXXXXXXXX XXXXXXXXCQ ENSP00000363506/1-299 KVGAFTKIIE AMGFTGPLKY SKWKIKIAAL RMYTSCVEKT DFEEFFLRCQ ENSBTAP00000041409/1-296 KVGAFTKIIE AMGFTGPLKY SKWKIKIAAL RMYTSCVEKT DFEEFFLRCQ 151 200 bmy_00584T0/1-168 ---------- ---------- ---------- KY-------- ---------- ENSTTRP00000016133/1-299 MPDTFNSWFL ITLLHVWMCL VRMKQEGRSG KYMCRIIVHF MWEDVEQRGR ENSP00000363506/1-299 MPDTFNSWFL ITLLHVWMCL VRMKQEGRSG KYMCRIIVHF MWEDVQQRGR ENSBTAP00000041409/1-296 MPDTFNSWFL ITLLHVWMCL VRMKQEGRSG KYMCRIIVHF MWEDVEQRGR 201 250 bmy_00584T0/1-168 ---VNSYILK KNMMLMTNNF YVAILGYDEG VLSDDRGLAA ALWRTFFNQK ENSTTRP00000016133/1-299 IMGVNSYILK KNMMLMTNNF YVAILGYDEG VLSDDRGLAA ALWRTFFNQK ENSP00000363506/1-299 VMGVNPYILK KNMILMTNHF YAAILGYDEG ILSDDHGLAA ALWRTFFNRK ENSBTAP00000041409/1-296 IMGVNPYILK KNMMLMTNNF YAAILGYDEG ILSDDRGLAA ALWRTFFNQK 251 300 bmy_00584T0/1-168 CEDPQQLELL VEYVRKQIQY LDSMNGEDLL LTGEYAQESH WVGYGAGRTL ENSTTRP00000016133/1-299 CEDPRQLELL VEYVRKQIQY LDSMNGEDLL LTGEVS---- W------RPL ENSP00000363506/1-299 CEDPRHLELL VEYVRKQIQY LDSMNGEDLL LTGEVS---- W------RPL ENSBTAP00000041409/1-296 CEDPRQLELL VEYVRKQIQY LDSMSGEDLL LTGEVS---- W------RPL 301 350 bmy_00584T0/1-168 SPSKVSSPSR EALSKSSPAH TPQVPSRKHA IDSFSQRPQK GMGQLTWDGG ENSTTRP00000016133/1-299 ----VEKNPQ SILKPHSPTY N--------- --------DE GL-------- ENSP00000363506/1-299 ----VEKNPQ SILKPHSPTY N--------- --------DE GL-------- ENSBTAP00000041409/1-296 ----VEKNPQ SILKPHSPTY N--------- --------DE GL-------- 351 400 bmy_00584T0/1-168 CHELRSTAQL S ENSTTRP00000016133/1-299 ---------- - ENSP00000363506/1-299 ---------- - ENSBTAP00000041409/1-296 ---------- -