KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:33 2014 Check: 00 .. Name: bmy_13541T0/1-199 Len: 337 Check: 1928 Weight: 1.00 Name: ENSTTRP00000013941/1-295 Len: 337 Check: 3721 Weight: 1.00 Name: ENSP00000216445/1-296 Len: 337 Check: 8523 Weight: 1.00 Name: ENSBTAP00000041234/1-334 Len: 337 Check: 4370 Weight: 1.00 Name: BACU015375/1-233 Len: 337 Check: 4908 Weight: 1.00 // 1 50 bmy_13541T0/1-199 ---------- ---------- ---------M LDF------- ---------- ENSTTRP00000013941/1-295 MGLSHSKAHP KVTKVAPLQN KEEESPSAGP VDFVFTENPE EKSSYSFARL ENSP00000216445/1-296 MGLSHSKTHL RVIKVAPLQN KEVETPSAGR VDFAFNQNLE EKTSYSLARL ENSBTAP00000041234/1-334 MGLSHSKPHP RVTKVVPLQN KEEETPLAGP VDFAFTQNLE ENSLYSFARL BACU015375/1-233 MGLSHSKAHP RVTKVAPLQN KEEETPSAAP VDFVFTENPE EKSSYSFARL 51 100 bmy_13541T0/1-199 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013941/1-295 EERNKALEGQ LPPLRETWYG RYSAGPRAMY FDIPLEQGET SIIKRHPPRR ENSP00000216445/1-296 QDQNKALEGQ LPPLQENWYG RYSTASRDMY FDIPLEHRET SIIKRHPPQR ENSBTAP00000041234/1-334 QDRNKALEGQ LPPLRETWYG RYSEGPRAMY FDFPLEQQET SIIKRHPPRR BACU015375/1-233 QERNKALEGQ LPPLRETCYG RYSAGPRAMY FDIPLEQGET SIIKRHPPRR 101 150 bmy_13541T0/1-199 -QKLAPIDLP QVITSERLLS QQEAGRTHXA KQELEKKMQT LMYPSGKRQY ENSTTRP00000013941/1-295 LQKLEPIDLP QVITSERLLS QEEAGRTHKG KQELEKKMQT LMYPSGKRQY ENSP00000216445/1-296 LQKLEPIDLP RVITSGRLLS QREARTMHKA KQVLEKKMQT PMYTSENRQY ENSBTAP00000041234/1-334 LQKLEPIDLP QVITSERLLN QQEARRTHKA K-ELEKKMQT LMYPSGNRQY BACU015375/1-233 LQ-------- ---------- ---------- ---------- ---------- 151 200 bmy_13541T0/1-199 LHKMQMLEMN RKRQEAQVEL KTSLHKEART NKQKQRDHKV KKILQSIPRN ENSTTRP00000013941/1-295 LHKMQMLEMN RKRQEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000216445/1-296 LHKMQVLEMI RKRQEAQMEL KKSLHGEARI NKQSPRDHKA KKTLQSTPRN ENSBTAP00000041234/1-334 LHKMQMLEMN RKRQEAQVEL KKSLHKEPRT NKQKQRDHKA KKILQSIPRN BACU015375/1-233 ---------- -----AQVEL KTSLHKEART NKQKQRDHKV KKILQSIPRN 201 250 bmy_13541T0/1-199 DDGDFLTLLP DETLNRSPE- ---------- ---------- ---------- ENSTTRP00000013941/1-295 XXXXXXXXXX XXXXXXXXX- ---------- ---------- ---------- ENSP00000216445/1-296 DDHDLLTMLP DEILNRGPG- ---------- ---------- ---------- ENSBTAP00000041234/1-334 DDGDFLTLLP DETLSRSLGE VSLYLPKFSD GSLVHSKKKM KLTYGQETKR BACU015375/1-233 DDGDFLTLLP DETLNRSPE- ---------- ---------- ---------- 251 300 bmy_13541T0/1-199 ---------- NTQNAEFLEQ QASNDYCPQK IGKLETWLHE QEARGQLLWD ENSTTRP00000013941/1-295 ---------- NTQNAEFLEH QASNDYCPQK IGKLETWFRE REARGQLLWD ENSP00000216445/1-296 ---------- NSKNTEFLKH QAVNNYCPWK IGKMETWLHE QEAQGQLLWD ENSBTAP00000041234/1-334 RSPVIPKKKR NTQNADFLEH QARNDHCPRK IGKMEIWLRE QEARGELLWD BACU015375/1-233 ---------- NTQNAEFLEQ QASNDYCPQK IGKLETWLRE QEARGQLLWD 301 350 bmy_13541T0/1-199 SSSSDSDELG KDEKKPRALV RTRTEKIPLF DEFFDRE ENSTTRP00000013941/1-295 SSSSDSDELG KDEKKPRALV RTRTERIPLS DEFFHE- ENSP00000216445/1-296 SSSSDSDEQG KDEKKPRALV RTRTERIPLF DEFFDQE ENSBTAP00000041234/1-334 SSSSDSDESG KVEEKKRALV RTRTERIQHF DEFFD-- BACU015375/1-233 SSSSDSDELG KVEKKPRALV RTRTERIPLF DEFFDRE