KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:23 2014 Check: 00 .. Name: ENSTTRP00000000691/1-308 Len: 379 Check: 2811 Weight: 1.00 Name: bmy_14100T0/1-373 Len: 379 Check: 7966 Weight: 1.00 Name: ENSP00000291536/1-309 Len: 379 Check: 2985 Weight: 1.00 Name: BACU004395/1-308 Len: 379 Check: 2480 Weight: 1.00 Name: ENSBTAP00000041113/1-270 Len: 379 Check: 1839 Weight: 1.00 // 1 50 ENSTTRP00000000691/1-308 ------MSDL GSEELEEEGE K--------- ---------- -----YLGEY bmy_14100T0/1-373 MATADAVQAA GTYRLEKAQA AAGIQTGAGS CRTWARKSWR RRERMSLGNT ENSP00000291536/1-309 ------MSDL GSEELEEEGE N--------- ---------- -----DIGEY BACU004395/1-308 ------MSDL GSEELEEEGE N--------- ---------- -----DLGEY ENSBTAP00000041113/1-270 ------MSDL GSEELEEEGE N--------- ---------- -----DLG-- 51 100 ENSTTRP00000000691/1-308 EGERNEAGER HGHGKARLPN GDTYEGKYEY GK---RHGQX XXXXXXXXXX bmy_14100T0/1-373 KGSGTRPVSG MDTGKRDCPM GTRMKGNTNM VKDTARSESG TYKFKSGARY ENSP00000291536/1-309 EGGRNEAGER HGRGRARLPN GDTYEGSYEF GK---RHGQG IYKFKNGARY BACU004395/1-308 EGERNEAGER HGHGKARLPN GDTYEGKYEH GK---RHGQG TYKFKSGARY ENSBTAP00000041113/1-270 ---------- ---------- ---------- ---------G IYKFKNGARY 101 150 ENSTTRP00000000691/1-308 XXXXXXXXXX XXXXXXXXXX XXXXXEWADD LRHGHGVYYY VNNDSYTGEW bmy_14100T0/1-373 IGEYVKNKKH GQGTFIYPDG SRYEGEWADD LRHGHGVYYY VNNDSYTGEW ENSP00000291536/1-309 IGEYVRNKKH GQGTFIYPDG SRYEGEWAND LRHGHGVYYY INNDTYTGEW BACU004395/1-308 IGEYVKNKKH GQGIFIYPDG SRYEGEWADD LRHGHGVYYY VNNDSYTGEW ENSBTAP00000041113/1-270 IGEYVRNQKH GQGTFIYPDG SRYEGEWADD LRHGHGVYYY INNDTYTGEW 151 200 ENSTTRP00000000691/1-308 FAHQ------ ---------- -----RHGQG TYFYAETGSK YVGTWVNGQQ bmy_14100T0/1-373 FAHQRFGSLP GPTDHGTKCI ALIFTRHGQG TYFYAETGSK YVGTWVNGQQ ENSP00000291536/1-309 FAHQ------ ---------- -----RHGQG TYLYAETGSK YVGTWVNGQQ BACU004395/1-308 FAHQ------ ---------- -----RHGQG TYFYAETGSK YVGTWVNGQQ ENSBTAP00000041113/1-270 FAHQ------ ---------- -----RHGQG TYFYAETGSK YVGTWVNGQQ 201 250 ENSTTRP00000000691/1-308 KGTAELIHLN HKYQGKFLNK NXXXXXXXXX XXXXXXXXXX XXXXXERGEE bmy_14100T0/1-373 KGVAELIHLN HRYQGKFLNK NPVGPGKYVF DIGCEQHGEY HLTDVERGEE ENSP00000291536/1-309 EGTAELIHLN HRYQGKFLNK NPVGPGKYVF DVGCEQHGEY RLTDMERGEE BACU004395/1-308 KGTAELIHLN HRYQGKFLNK NPVGPGKYVF DIGCEQHGEY RLTDVERGEE ENSBTAP00000041113/1-270 EGAAELIHLN HRYQGKFLNK NPVGPGKYVF DIGCEQHGEY RLTDVERGEE 251 300 ENSTTRP00000000691/1-308 DEEET-PVTV VPKWKVTKIT ELALWTPPHP QEQPAADGPS QGEAPGAEDG bmy_14100T0/1-373 EEEEETLVTV VPKWKVTKIT ELALWTPTLP QEQPAVDGPG QGDAPGAEGG ENSP00000291536/1-309 EEEEE-LVTV VPKWKATQIT ELALWTPTLP KKPTSTDGPG Q-DAPGAESA BACU004395/1-308 EEEEETLVTV VPKWKVTKIT ELALWTPTLP QEQPAADGPG QGEAPGAEGG ENSBTAP00000041113/1-270 EEEEETLITV IPKWKATKIT ELALWTPTLP QEQPAADRPG QEEAPGAEGG 301 350 ENSTTRP00000000691/1-308 GESVEEVQPL TDDMSEGELD SVHPGEEEGD ASRE-----D GEEFHYDSLE bmy_14100T0/1-373 GEPAEEVQPL T-DVSEGELD SMQPGEEEGD TSRE-----D GEEFRYDSLD ENSP00000291536/1-309 GEPGEEAQAL L-EGFEGEMD -MRPGDEDAD VLREESREYD QEEFRYD-MD BACU004395/1-308 GEPAEEVQPL T-DVSEGELD SMQPGEEEGD TSRE-----D REEFRYDSLD ENSBTAP00000041113/1-270 GEMVEEVQPL T-DVSEGELE STRPGDEEGD ASRE-----D REEFQYDSLD 351 400 ENSTTRP00000000691/1-308 QGNVNFEEEE ARQPELLD-- --------- bmy_14100T0/1-373 QGVLETLVLK KRKSDSQNCW IKMKQKPEW ENSP00000291536/1-309 EGNINSEEEE TRQSDLQD-- --------- BACU004395/1-308 QGNVSFEEEE VRQPELLD-- --------- ENSBTAP00000041113/1-270 QGNISFEEEE GRQSELLE-- ---------