KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:52 2014 Check: 00 .. Name: ENSP00000325917/1-785 Len: 857 Check: 2218 Weight: 1.00 Name: ENSBTAP00000039868/1-786 Len: 857 Check: 5505 Weight: 1.00 Name: ENSTTRP00000000920/1-786 Len: 857 Check: 4595 Weight: 1.00 Name: bmy_03291T0/1-828 Len: 857 Check: 6426 Weight: 1.00 Name: BACU017302/1-751 Len: 857 Check: 4919 Weight: 1.00 // 1 50 ENSP00000325917/1-785 MPKGRQKVPH LDAPLGL-PT CLWLELAGLF LLVPWVMGLA GTGGPD---- ENSBTAP00000039868/1-786 MPKGRQKVPH SDAPLGL-PT GLWLELAGLF LLLPWVMGLV GAGGPR---- ENSTTRP00000000920/1-786 MPKGRQKVPH SDAPLGPRPI CLCLELAGLF LLLPWVMGLV GAGGPG---- bmy_03291T0/1-828 ---GSREFPQ GGGG----SS C--------- ---------- --GQAGLQSV BACU017302/1-751 ---------- ---------- ---------- ------MGLV GAGGPG---- 51 100 ENSP00000325917/1-785 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039868/1-786 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000920/1-786 ---------- ---------- ---------- ---------- ---------- bmy_03291T0/1-828 LGVTTAHSER DAFSPFAQNE REVVSQTRSS ASLRVQPTAL MPKGRQKVPH BACU017302/1-751 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000325917/1-785 --GQGTGGPS WAVHLESLEG DGEEETLEQQ ADALAQAAGL VNAGRIGELQ ENSBTAP00000039868/1-786 --AQGPRGLS WAVRLDGPEG EGAEESLERR ADALAQATGL MNAGRIGELQ ENSTTRP00000000920/1-786 --ARGPEGLS WAVRVDSPEG EREEQSLEQR ADALAQAAGL VNAGRIGELQ bmy_03291T0/1-828 SDAPGPGGLS WAVHVDSPEG EREEQSLEQQ ADALAQAAGL VNAGRIGELQ BACU017302/1-751 --AQGPGVLS WAVHVDSPEG EREEQSLEQR ADALAQAAGL VNAGRIGELQ 151 200 ENSP00000325917/1-785 GHYLFVQPAG HRPALEVEAI RQQVEAVLAG HEAVRWHSEQ RLLRRAKRSV ENSBTAP00000039868/1-786 GHYLLVQPAG HRQARQVKAI RQQVEAVLAR HEAVRWHSEQ RLLKRTKRGV ENSTTRP00000000920/1-786 GHYLLVQPAG HQQAPQVEAV RQQVEAVLAR HEAVRWHSEQ RLLKRTKRSV bmy_03291T0/1-828 GHYLLVQPAG HRQAPQVEAV RQQVEAVLAR HEAVRWHSEQ RLLKRTKRSV BACU017302/1-751 GHYLLVQPAG HRQAPQVEAV RQQVEAVLAR HEAVRWHSEQ RLLKRTKRSV 201 250 ENSP00000325917/1-785 HFNDPKYPQQ WHLNNRRSPG RDINVTGVWE RNVTGRGVTV VVVDDGVEHT ENSBTAP00000039868/1-786 HFNDPKYPQQ WHLNNRRSPG RDINVTGVWE RNVTGRGVTV VVVDDGVEHT ENSTTRP00000000920/1-786 HFNDPKYPQQ WHLNNRRSPG RDINVTGVWE RNVTGQGVTV VVVDDGVEHT bmy_03291T0/1-828 HFNDPKYPQQ WHLNNRRNPG RDINVTGVWE RNVTGQGVTV VVVDDGVEHT BACU017302/1-751 HFNDPKYPQQ WHLNNRRNPG RDINVTGVWE RNVTGRGVTV VVVDDGVEHT 251 300 ENSP00000325917/1-785 IQDIAPNYSP EGSYDLNSND PDPMPHPDVE NGNHHGTRCA GEIAAVPNNS ENSBTAP00000039868/1-786 IQDIAPNYSP EGSYDLNSND PDPMPHPDLE NGNHHGTRCA GEIAAVPNNS ENSTTRP00000000920/1-786 IQDIAPNYSP EGSYDLNSND PDPMPHPDVE NGNHHGTRCA GEIAAVPNNS bmy_03291T0/1-828 IQDIAPNYSP EGSYDLNSND PDPMPHPDME NGNHHGTRCA GEIAAVPNNS BACU017302/1-751 IQDIAPNYSP EGSYDLNSND PDPMPHPDME NGNHHGTRCA GEIAAVPNNS 301 350 ENSP00000325917/1-785 FCAVGVAYGS RIAGIRVLDG PLTDSMEAVA FNKHYQINDI YSCSWGPDDD ENSBTAP00000039868/1-786 FCAVGVAFGS RIAGIRVLDG PLTDSMEAVA FNKHYQINDI YSCSWGPDDD ENSTTRP00000000920/1-786 FCAVGVAYGS RIAGIRVLDG PLTDSMEAVA FNKHYQINDI YSCSWGPDDD bmy_03291T0/1-828 FCAVGVAYGS RIAGIRVLDG PLTDSMEAVA FNKHYQINDI YSCSWGPDDD BACU017302/1-751 FCAVGVAYGS RIAGIRVLDG PLTDSMEAVA FNKHYQINDI YSCSWGPDDD 351 400 ENSP00000325917/1-785 GKTVDGPHQL GKAALQHGVI AGRQGFGSIF VVASGNGGQH NDNCNYDGYA ENSBTAP00000039868/1-786 GKTVDGPHQL GKAALQHGVI AGRQGFGSIF VVASGNGGQH NDNCNYDGYA ENSTTRP00000000920/1-786 GKTVDGPHQL GKAALQHGVI AGRQGFGSIF VVASGNGGQH NDNCNYDGYA bmy_03291T0/1-828 GKTVDGPHQL GKAALQHGVI AGRQGFGSIF VVASGNGGQH NDNCNYDGYA BACU017302/1-751 GKTVDGPHQL GKAALQHGVI AGRQGFGSIF VVASGNGGQH HDNCNYDGYA 401 450 ENSP00000325917/1-785 NSIYTVTIGA VDEEGRMPFY AEECASMLAV TFSGGDKMLR SIVTTDWDLQ ENSBTAP00000039868/1-786 NSIYTVTIGA VDEEGRMPFY AEECASMLAV TFSGGDKMLR SIVTTDWDLQ ENSTTRP00000000920/1-786 NSIYTVTIGA VDEEGRMPFY AEECASTLAV TFSGGDKMLR SIVTTDWDLQ bmy_03291T0/1-828 NSIYTVTIGA VDEEGRMPFY AEECASMLAV TFSGGDKMLR SIVTTDWDLQ BACU017302/1-751 NSIYTVTIGA VDEEGRMPFY AEECASMLAV TFSGGDRMLR SIVTTDWDLQ 451 500 ENSP00000325917/1-785 KGTGCTEGHT GTSAAAPLAA GMIALMLQVR PCLTWRDVQH IIVFTATRYE ENSBTAP00000039868/1-786 KGTGCTEGHT GTSAAAPLAA GMIALMLQVR PCLTWRDVQH IIVFTATRYE ENSTTRP00000000920/1-786 KGTGCTEGHT GTSAAAPLAA GMIALMLQVR PCLTWRDVQH IIVFTATQYE bmy_03291T0/1-828 KGTGCTEGHT GTSAAAPLAA GMIALMLQVR PCLTWRDVQH IIVFTATPYE BACU017302/1-751 KGTGCTEGHT GTSAAAPLAA GMIALMLQVR PCLTWRDVQH IIVFTATPYE 501 550 ENSP00000325917/1-785 DRRAEWVTNE AGFSHSHQHG FGLLNAWRLV NAAKIWTSVP YLASYVSPVL ENSBTAP00000039868/1-786 DRHADWITNE AGFSHSHQHG FGLLNAWRLV NAAKIWTSVP YLASYVSPVL ENSTTRP00000000920/1-786 DRRADWITNE AGFSHSHQHG FGLLNAWRLV NAA-IWTSVP YLASYVSPVL bmy_03291T0/1-828 DRRADWITNE AGFSHSHQHG FGLLNAWRLV NAAKIWTSVP YLASYVSPVL BACU017302/1-751 DRRADWITNE AGFSHSHQHG FGLLNAWRLV NAAKIWTSVP YLASYVSPVL 551 600 ENSP00000325917/1-785 KENKAIPQSP RSLEVLWNVS RMDLEMSGLK TLEHVAVTVS ITHPRRGSLE ENSBTAP00000039868/1-786 KENKAIPLSA RPLEVLWNVS RMDLDMSGLK TLEHVAVTIS ITHPRRGSLE ENSTTRP00000000920/1-786 KENKAIPLSA RPLEVLWNVS RMDLEMSGLK TLEHVAVTVS ITHPRRGSLE bmy_03291T0/1-828 KENKAIPPSA RPLEVLWNVS RMDLEMSGLK TLEHVAVTVS ITHPRRGSLE BACU017302/1-751 KENKAIPLSA RPLEVLWNVS RMDLEMSGLK TLEHVAVTVS ITHPRRGSLE 601 650 ENSP00000325917/1-785 LKLFCPSGMM SLIGAPRSMD SDPNGFNDWT FSTVRCWGER ARGTYRLVIR ENSBTAP00000039868/1-786 VKLFCPSGMM SLIGAPRSLD SDPNGFNDWT FSTVRCWGER AKGTYRLVIR ENSTTRP00000000920/1-786 LKLFCPSGMM SLIGTPRSLD SDPNGFNDWT FSTVRCWGER AKGTYRLVVR bmy_03291T0/1-828 LKLFCPSGMM SRIGTPRSLD SDPNGFNDWT FSTVRCWGER AKGTYRLVIR BACU017302/1-751 LKLFCPSGMM SLIGTPRSLD SDPNGFNDWT FSTVRCWGER AKGTYRLVIR 651 700 ENSP00000325917/1-785 DV-------- -----GDESF QVGILRQWQL TLYGSVWSAV DIRDRQRLLE ENSBTAP00000039868/1-786 DV-------- -----GDETS QAGVLRQWQL TLYGSVWSPV DIRDRQRLLE ENSTTRP00000000920/1-786 DV-------- -----GDETS QPGILRQWQL TLYGSVWSPV DIRDRQRLLE bmy_03291T0/1-828 DVAGRGSRTA PLAALGDETS QAGILRQWQL TLYGSVWSPV DIRDRQRLLE BACU017302/1-751 DV-------- -----GDETS QAGILRQWQL TLYGSVWSPV DIRDRQRLLE 701 750 ENSP00000325917/1-785 SAMSGKYLHD DFALPCPPGL KIPEEDGYTI TPNTLKTLVL VGCFTVFWTV ENSBTAP00000039868/1-786 SAMSGKYLHD GFTLPCPPGL NIPEEDGYTI TPNTLKTLVL IGCFTVFWTI ENSTTRP00000000920/1-786 SAMSGKYLHD GFTLPCPPGL KIPEEDGYTI TPNTLKTLVL IGCFAVFWTI bmy_03291T0/1-828 SAMSGKYLHD GFTLPCPPGL KIPEEDGYTI TPNTLKTLVL IGCFAVFWTI BACU017302/1-751 SAMSGKYLHD GFTLPCPPGL KIPEDDGYTI TPNTLKTLVL IGCFAVFWTI 751 800 ENSP00000325917/1-785 YYMLEVYLSQ RNVASNQVCR SGPCHWPHRS RKAKEEGTEL ESVPLCSSKD ENSBTAP00000039868/1-786 YYTLEVYLSQ RNVAFGPICR SGPCHWPQRS QKAKEEGTEL ESMPLCSSQD ENSTTRP00000000920/1-786 YYMLEVYLSQ RNVASHPVCR SGPRHRPQRS RTAKEEGTEL ESVPLCSSQD bmy_03291T0/1-828 YYMLEVYLSQ RNVASHPVCR SGPCHRPQRS RTAKEEGTEL ESVPLCSSQD BACU017302/1-751 YYMLEVYLSQ RNVASHPVCR SGPCHRPQRS RTAKEEGTEL ESVPLCSSQD 801 850 ENSP00000325917/1-785 PDEVETESRG PPTTSDLLAP DLLEQGDWSL SQNKSALDCP HQHL--DVPH ENSBTAP00000039868/1-786 PGGVGLESEG SPTTSRLHAP DLLDQGDWSL SQSRGALDVP -QLLPPDLLQ ENSTTRP00000000920/1-786 PGGVGMESEG PPATSGLHAP DLLDQGDWSL SQSRSALDCP -QHLPPDLLQ bmy_03291T0/1-828 PGGVGMESEG PPATSELHAP DLLDQGDWSL SQSRSALDCP -QHLPPDLLQ BACU017302/1-751 PGGVGMGSEG PPATSELHAP DLLDQGDWSL SQSRSALGCP -QHLPPDLLQ 851 900 ENSP00000325917/1-785 GKEEQIC ENSBTAP00000039868/1-786 GKEAQMC ENSTTRP00000000920/1-786 AKEVQIC bmy_03291T0/1-828 GKEVQIC BACU017302/1-751 GKEAQIC