KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:31 2014 Check: 00 .. Name: ENSBTAP00000039412/1-270 Len: 347 Check: 9861 Weight: 1.00 Name: ENSP00000325958/1-201 Len: 347 Check: 725 Weight: 1.00 Name: bmy_04134T0/1-347 Len: 347 Check: 5264 Weight: 1.00 Name: BACU008963/1-275 Len: 347 Check: 1991 Weight: 1.00 Name: ENSTTRP00000013427/1-107 Len: 347 Check: 8943 Weight: 1.00 // 1 50 ENSBTAP00000039412/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000325958/1-201 ---------- ---------- ---------- ---------- ---------- bmy_04134T0/1-347 TVSHAGVRDL LTWSHSPLPR EGGQWHRQRS QFHTRETHNL GPRTRPSSSG BACU008963/1-275 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013427/1-107 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000039412/1-270 ---------- ---------- --MVWVPGAP GGPGDSPGAG PEVATLERPA ENSP00000325958/1-201 ---------- ---------- ---------- ---------- ---------- bmy_04134T0/1-347 VPVSRPGSLG PSPEAGSPSS RDMVPVPLGP GSPEVSLGAG PEVSALKRPA BACU008963/1-275 ---------- ---------- --MVPVPLGP GSPEVSLGAG PEVSALRRPA ENSTTRP00000013427/1-107 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000039412/1-270 PAGSSSLGAA -----AASPP PWPGPRSPAS CPAVGGSPLR RAGWAGMAAG ENSP00000325958/1-201 ---------- ---------- ---------- ---------- ------MAAT bmy_04134T0/1-347 PAVSPSLEAA DDSQSSASSL FWPSSRPPPA SPGVGRSSLR RAGWGRMAAG BACU008963/1-275 PAVSPSLEAA DDSQSSASSL FWPSSRPPPA SPGVGRSSLR PAGWGRMAAG ENSTTRP00000013427/1-107 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000039412/1-270 TLLEAGLARV LYYPTLLYTV FRGKMPGRAH RDWYHRIDST VLLGALPLRS ENSP00000325958/1-201 ALLEAGLARV LFYPTLLYTL FRGKVPGRAH RDWYHRIDPT VLLGALPLRS bmy_04134T0/1-347 TLLEAGLARV LFYPTLLYTL FRGKMPGPAH RDWYNRIDNT VLLGALPLRN BACU008963/1-275 TLLEAGLARV LFYPTLLYTL FRGKMPGPAH RDWYNRIDNT VLLGALPLRN ENSTTRP00000013427/1-107 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000039412/1-270 MTRRLVQDEN VRGVITMNEE YETRFLCNSS KEWEKAGVEQ LRLSTVDMTG ENSP00000325958/1-201 LTRQLVQDEN VRGVITMNEE YETRFLCNSS QEWKRLGVEQ LRLSTVDMTG bmy_04134T0/1-347 MTRRLVQDEN VRGLITMNEE YETRFLCNSP KEWKNVGVEQ LRLSTIDMTG BACU008963/1-275 MTRRLVQDEN VRGLITMNEE YETRFLCNSP KEWKNVGVEQ LRLSTIDMTG ENSTTRP00000013427/1-107 ---------- ---------- ---------- -EWKNAGVEQ LRLSTIDMTG 251 300 ENSBTAP00000039412/1-270 VPTLANLQKG VQFTIRHQSL GHSVYVHCKA GRSRSATMVA AYLIQVYHWT ENSP00000325958/1-201 IPTLDNLQKG VQFALKYQSL GQCVYVHCKA GRSRSATMVA AYLIQVHKWS bmy_04134T0/1-347 VPTLANLQKG VQFALKYQSL GQSVYVHCKA GRSRSATMVA AYLIQVYNWT BACU008963/1-275 VPTLANLQKG VQFALKYQSL GQSVYVHCKA GRSRSATMVA AYLIQVYNWT ENSTTRP00000013427/1-107 VPTLANLQKG VQFALKYQSL GQSVYVHCKA GRSRSA---- -----VYNWT 301 350 ENSBTAP00000039412/1-270 PEEAIRAITK IRSHIYIRPG QLEVLKEFHK VTTAGAAKTE IHHTPLT ENSP00000325958/1-201 PEEAVRAIAK IRSYIHIRPG QLDVLKEFHK QITARATKDG TFVISKT bmy_04134T0/1-347 PEEAVRAITK IRSHIYIRPG QLEVLKEFHK VITAGAAKNE TCHTSQT BACU008963/1-275 PEEAVRAITK IRSHIYIRPG QLEVLKEFHK VITAGAAKNE TCHTSQT ENSTTRP00000013427/1-107 PEEAVRAITK IRSHIYIRPG QLEVLREFHR VITAGAAKNE TCHTSQI