KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:23 2014 Check: 00 .. Name: ENSTTRP00000012390/1-542 Len: 583 Check: 8276 Weight: 1.00 Name: bmy_14500T0/1-409 Len: 583 Check: 4282 Weight: 1.00 Name: ENSP00000346155/1-548 Len: 583 Check: 2564 Weight: 1.00 Name: ENSBTAP00000039131/1-548 Len: 583 Check: 984 Weight: 1.00 // 1 50 ENSTTRP00000012390/1-542 MAALPASAEP P-PAP--PP- AAGDEPDRLE GKS------- ----EDRSNA bmy_14500T0/1-409 -MMPCTHLGS P-CCPGLPCV LAMSSPPAYP GIRVSGCWTL GAEGSSSSNA ENSP00000346155/1-548 MAAPPARADA D-PSPTSPP- TARDTPGRQA EKSETAC--- ----EDRSNA ENSBTAP00000039131/1-548 MAAPPASADA PRPAP--PPL AAGDGPDRPE GKTETTC--- ----EDRSNA 51 100 ENSTTRP00000012390/1-542 ESLDRLLPPV GAGRSHLNRT TSQCKSEPPL LRTSKRTIYT AGRPPWYKEH bmy_14500T0/1-409 ESLDRLLPPV GAGRSPRKRT TSQCKSEPPL LRTSKRTIYT AGRPPWYNEH ENSP00000346155/1-548 ESLDRLLPPV GTGRSPRKRT TSQCKSEPPL LRTSKRTIYT AGRPPWYNEH ENSBTAP00000039131/1-548 ESLDRLLPPV GAGRSPRKRT TSQCKSEPPL LRTSKRTIYT AGRPPWYNEH 101 150 ENSTTRP00000012390/1-542 GTQSKEAFAI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14500T0/1-409 GTQSKEAFAI GLGGGSASGK TTVARMIIEA LDVPWVVLLS MDSFYKVLTR ENSP00000346155/1-548 GTQSKEAFAI GLGGGSASGK TTVARMIIEA LDVPWVVLLS MDSFYKVLTE ENSBTAP00000039131/1-548 GTQSKEAFAI GLGGGSASGK TTVARMIIEA LDVPWVVLLS MDSFYKVLTR 151 200 ENSTTRP00000012390/1-542 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14500T0/1-409 QQQEQAAHNN FNFDHPDAFD FDLIISTLKK LKQGKSVKVP IYDFTTHSRK ENSP00000346155/1-548 QQQEQAAHNN FNFDHPDAFD FDLIISTLKK LKQGKSVKVP IYDFTTHSRK ENSBTAP00000039131/1-548 QQQEQAAHNN FNFDHPDAFD FDLIISTLKK LKQGKSVKVP IYDFTTHSRK 201 250 ENSTTRP00000012390/1-542 XXX------- ---------- ---------K TLYGANVIIF EGIMAFADKT bmy_14500T0/1-409 KDWVGPAGSA AQGWHSGLRA ASGHTIPLQK TLYGANVIIF EGIMAFADKT ENSP00000346155/1-548 KDW------- ---------- ---------K TLYGANVIIF EGIMAFADKT ENSBTAP00000039131/1-548 KDW------- ---------- ---------K TLYGANVIIF EGIMAFADKT 251 300 ENSTTRP00000012390/1-542 LLELLDMKIF VDTDSDIRLV RRLRRDISER GRDIEGVIKQ YNKFVKPAFD bmy_14500T0/1-409 LLELLDMKIF VDTDSDIRLV RRLRRDISER GRDIEGVIKQ YNKFVKPAFD ENSP00000346155/1-548 LLELLDMKIF VDTDSDIRLV RRLRRDISER GRDIEGVIKQ YNKFVKPSFD ENSBTAP00000039131/1-548 LLELLDMKIF VDTDSDIRLV RRLRRDISER GRDIEGVIKQ YNKFVKPAFD 301 350 ENSTTRP00000012390/1-542 QYIQPTMRVA DIVVPRGSGN TVAIDLIVQH VHSQLEELRF VPRAALASAH bmy_14500T0/1-409 QYIQPTMRVA DIVVPRGSGN TVAIDLIVQH VHSQLEEGRA GLSAPVPP-- ENSP00000346155/1-548 QYIQPTMRLA DIVVPRGSGN TVAIDLIVQH VHSQLEEREL SVRAALASAH ENSBTAP00000039131/1-548 QYIQPTMRVA DIVVPRGSGN TVAIDLIVQH VHSQLEEREL SVRAALASAH 351 400 ENSTTRP00000012390/1-542 QCHPLPRTLS VLKSTPQVRG MHTIIRDRET SRDEFIFYSK RLMRLLIEHA bmy_14500T0/1-409 ---PAPDAEC PQEHAAGAGH AHH------- ---------- ---------- ENSP00000346155/1-548 QCHPLPRTLS VLKSTPQVRG MHTIIRDKET SRDEFIFYSK RLMRLLIEHA ENSBTAP00000039131/1-548 QCHPLPRTLS VLKSTPQVRG MHTIIRDRET SRDEFIFYSK RLMRLLIEHA 401 450 ENSTTRP00000012390/1-542 LSFLPFQDCV VQTPQGQDYS GKCYAGKQIT GVSILRAGET MEPALRAVCK bmy_14500T0/1-409 -----HQDCV VQTPQGQDYS GKCYAGKQVP GV---RPGRQ ---------- ENSP00000346155/1-548 LSFLPFQDCV VQTPQGQDYA GKCYAGKQIT GVSILRAGET MEPALRAVCK ENSBTAP00000039131/1-548 LSFLPFQDCV VQTPQGQDYA GKCYAGKQIT GVSILRAGET MEPALRAVCK 451 500 ENSTTRP00000012390/1-542 DVRIGTILIQ TNQLTGEPEL HYLRLPKDIS DDHVILMDCT VSTGAAAMMA bmy_14500T0/1-409 ---------- ---------- ---------- ---------- ---------- ENSP00000346155/1-548 DVRIGTILIQ TNQLTGEPEL HYLRLPKDIS DDHVILMDCT VSTGAAAMMA ENSBTAP00000039131/1-548 DVRIGTILIQ TNQQTGEPEL HYLRLPKDIS DDHVILMDCT VSTGAAAMMA 501 550 ENSTTRP00000012390/1-542 VRVLLDHDVP EDKIFLLSLL MAEMGVHSVA YAFPRVRIIT TAVDKRVNDL bmy_14500T0/1-409 ---------- ---------- ---------- ---------- ---------- ENSP00000346155/1-548 VRVLLDHDVP EDKIFLLSLL MAEMGVHSVA YAFPRVRIIT TAVDKRVNDL ENSBTAP00000039131/1-548 VRVLLDHDVP EDKIFLLSLL MAEMGVHSVA YAFPRVRIIT TAVDKRVNDL 551 600 ENSTTRP00000012390/1-542 FRIIPGIGNF GDRYFGTDAV PDGSDEEEGG SVG bmy_14500T0/1-409 -----GAGAA GRR------- ---------- GSG ENSP00000346155/1-548 FRIIPGIGNF GDRYFGTDAV PDGSDEEEVA YTG ENSBTAP00000039131/1-548 FRIIPGIGNF GDRYFGTDAV PDGSDDEEGG STG